mRNA_P-littoralis_Contig18.108.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig18.108.1
Unique NamemRNA_P-littoralis_Contig18.108.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig18.108.1 vs. uniprot
Match: D8LRQ9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRQ9_ECTSI)

HSP 1 Score: 865 bits (2236), Expect = 1.230e-296
Identity = 501/776 (64.56%), Postives = 566/776 (72.94%), Query Frame = 1 
Query:  676 NGVAGVGDAHQNARGVGGG---------RQDQPDEQRDNLKGHDEKQTLVSGMGNLLKRARRGVNSYFSALARQQVKHARQRRERERMMSS---NLDFLVDAEEGVSLLTQVADGHEQTT----------------NGGILHRSQSAVFVPSRLPQQA-NTSSSVAVLETRSAGMASDAGELGDVNEAEVFLQNEQRDHGAGGRLEAGGGTMKRGGRSTLTTGDLVRLYREEGQGAGEDSAQDEDRERQRKSQGNIVGGRPFRWSLRPRRTASKTSSMPRLNDRESNVQQWKRDQDQWAHLGFKVLGVEIGHLPAHQQVALLAGGVFFFLLIYGYMQEYLVVKIFEREYGLFMTFLQFFGYAACAALRRGIHRETGRKIPMRTYCGLGFLQAVMQGLTNVSMMYLNYPAKVLFKSSRMVPIMCFGVVWQGRRYSMRDCGVVCFIVVGLATFMNAETRSSVNSETPSSLLGVACISLALVIDAANINIQEEVMNRYASCQDELIMFSYLCGTMFVASFCVFSGELVSGFVFLHGKGMWAISAVMLYCAAGFLGGSCAVALTKRFGALHSAITTTARKAVTLMLSFVYFRKAFTAQHLVGATVFMVGLMTKVLGKEGKSSSPAGQSANNSPAVTPMINSQHRKYLG----GREESVQLNSSGSGXXXXXXXXXXXXXXNSSTDVLRAQSPSAAGQEGSKTSGGNSGGYPMRHRGSPTLARGTRKSAGERNGVGG-----GGTGDSRGGRWVRKRPFSPSRSPSRNGVASPPVSGLGMM 2889
            +GVAG+GD  Q+ R  G           RQ+ P+    N KGHDE++TL+ G+G+LL RARRGVNSYFSALAR+Q   ARQ+RER    SS   N DFLV+AEEGV LL+    G E                   NGG LHRSQSAVFVPSR  QQA + SS+ + LETRSAG+ +D GEL DV+E + FL+ E              G   R GR+ LTTGDLVRLYREE QGAGEDSAQDEDRER   SQG  +GGR FRW L  R+ A+K + +P+L DR+SNV+Q KRD++QWA  GFKVLGVEIGHLP  QQVALL GGVFFFLLIYGYMQEYLVVKIFER++GLFMTFLQFFGYA CAALRRG+HRET RK+P+RTY GLGFLQAVMQGLTNVSMMYLNYPAKVLFKSSRMVPIMCFGVVWQG+RYSMRDC VVCFIV GLATFMNAETRSS  S+TP SLLG+ CISLALVIDAANIN+QEEVMN YASCQDELIMFSYLCGT++VAS+CVFSGEL+SGF+FLH KG  A  AVMLYC AGFLGGSCAVALTKRFGALHSAITTTARKAVTLMLSF YF+KAFT QHLVGATVFM+GLMTK+ GK+ KSS+  G+SA NSPA TP I   HRK L     G+  S  L+S GSG               S       QSPS   QEG  +  G S GYP+RHRG+P L  G   +AG   G+G            RGG WVR++  SP RSP R  +ASPPV+GLGM+
Sbjct:   32 DGVAGIGDPRQDGRSGGXXXXXXXXGVQRQEPPNTPGSNRKGHDEEETLLRGVGDLLTRARRGVNSYFSALARKQRNVARQQRERAXXXSSSSNNCDFLVEAEEGVGLLSIAGGGTESADATXXXXXXXXXXXXXXNGGPLHRSQSAVFVPSRPDQQAADASSATSALETRSAGVVTDVGELRDVSEMDPFLREEVE------------GVDARAGRAGLTTGDLVRLYREEEQGAGEDSAQDEDRERLGSSQGKSLGGRRFRWGL-SRKAAAKATQVPQLMDRKSNVEQLKRDREQWADHGFKVLGVEIGHLPPTQQVALLVGGVFFFLLIYGYMQEYLVVKIFERKFGLFMTFLQFFGYATCAALRRGVHRETVRKVPLRTYFGLGFLQAVMQGLTNVSMMYLNYPAKVLFKSSRMVPIMCFGVVWQGKRYSMRDCLVVCFIVTGLATFMNAETRSSAESDTPCSLLGILCISLALVIDAANINMQEEVMNGYASCQDELIMFSYLCGTVYVASYCVFSGELISGFMFLHEKGPRAFVAVMLYCGAGFLGGSCAVALTKRFGALHSAITTTARKAVTLMLSFAYFQKAFTPQHLVGATVFMIGLMTKMFGKQSKSSAQTGKSAENSPAATPFIQPHHRKRLSDAEAGQSSSAALSSGGSGGDPCSGDGYGVVRG-SHAGTTCTQSPSPVRQEGPASIAGVSAGYPVRHRGNPKL--GGSPAAGRGGGIGSERXXXXXXXXXRGGHWVRQKQLSPPRSPFRARIASPPVTGLGMV 791
[Close]
BLAST of mRNA_P-littoralis_Contig18.108.1 vs. uniprot
Match: A0A6H5JV49_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV49_9PHAE)

HSP 1 Score: 548 bits (1411), Expect = 3.450e-177
Identity = 321/494 (64.98%), Postives = 366/494 (74.09%), Query Frame = 1 
Query:  676 NGVAGVGDAHQNARGVGGG--RQDQPDEQRDNLKGHDEKQTLVSGMGNLLKRARRGVNSYFSALARQQVKHARQRRERERMMSS---NLDFLVDAEEGVSLL------TQVADGHEQTT------NGGILHRSQSAVFVPSRLPQQA-NTSSSVAVLETRSAGMASDAGELGDVNEAEVFLQNEQRDHGAGGRLEAGGG---------------TMKRGGRSTLTTGDLVRLYREEGQGAGEDSAQDEDRERQRKSQGNIVGGRPFRWSLRP--RRTASKTSSMPRLNDRESNVQQWKRDQDQWAHLGFKVLGVEIGHLPAHQQVALLAGGVFFFLLIYGYMQEYLVVKIFEREYGLFMTFLQFFGYAACAALRRGIHRETGRKIPMRTYCGLGFLQAVMQGLTNVSMMYLNYPAKVLFKSSRMVPIMCFGVVWQGRRYSMRDCGVVCFIVVGLATFMNAETRSSVNSETPSSLLGVACISLALVIDAANINIQ 2052
            +G+AG GD  Q+ R  GGG  RQ+ PD    N KGHDE++TL  G+ +LL R RRGVNSY SALAR+Q   ARQRRER R  SS   N DFLVDAEE V LL      T+ AD    T       NGG LHRSQSAVFVPSR  QQA + SS+ + +ETRS G+ +D GEL DV+E E FL+ E     AG  +EA  G                M R GR+ LTTGDL RL+REE QGAGE SAQDEDRER R SQG  +GGR F W  R   R+ A+K + +P+L DR+S+++Q KRD++QW   GFKVLG+EIGHLP  QQVALLAGGVFFFLLIYGYMQEYLVVKIFER++GLFMTFLQFFGYAACAALRR +HRET RK+P+R Y GLGFLQAVMQGLTNVSMMYLN+PAKVLFKSSR+VPIMCFGVVWQ +RYSMRDC VVCFIV GLATFMNAETRSS  S+TP SLLG+  ISLALVIDAANIN+Q
Sbjct:   39 DGLAGTGDPCQDDRSGGGGVQRQEPPDTPGSNRKGHDEEETLRRGVADLLTRVRRGVNSYLSALARKQRNVARQRRERARXXSSSSNNRDFLVDAEEAVGLLSIAVGGTESADATRATVAAAAAANGGPLHRSQSAVFVPSRPDQQAPDASSATSAVETRSVGVVTDVGELRDVSEMEAFLREEVPGLDAGCGVEASAGGLSARGVXXXXXXXXXMNRAGRAGLTTGDLARLHREEEQGAGEGSAQDEDRERLRSSQGKSLGGRHFPWRFRRFRRKAAAKATHVPQLEDRKSDIEQLKRDREQWEDHGFKVLGMEIGHLPKAQQVALLAGGVFFFLLIYGYMQEYLVVKIFERKFGLFMTFLQFFGYAACAALRRRVHRETVRKVPLRLYFGLGFLQAVMQGLTNVSMMYLNFPAKVLFKSSRIVPIMCFGVVWQRKRYSMRDCLVVCFIVTGLATFMNAETRSSAESDTPCSLLGILYISLALVIDAANINMQ 532
[Close]
BLAST of mRNA_P-littoralis_Contig18.108.1 vs. uniprot
Match: W7UCB2_9STRA (Adenosine 3-phospho 5-phosphosulfate transporter 2 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7UCB2_9STRA)

HSP 1 Score: 274 bits (701), Expect = 7.110e-77
Identity = 156/370 (42.16%), Postives = 225/370 (60.81%), Query Frame = 1 
Query: 1459 WKRDQDQWAHLG-----FKVLGVEIGHLPAHQQVALLAGGVFFFLLIYGYMQEYLVVKIFEREYGLFMTFLQFFGYAACAALRRGIHRETGRKIPMRTYCGLGFLQAVMQGLTNVSMMYLNYPAKVLFKSSRMVPIMCFGVVWQGRRYSMRDCGVVCFIVVGLATFMNAETRSSVNSETPSSLLGVACISLALVIDAANINIQEEVMNRYASCQDELIMFSYLCGTMFVASFCVFSGELVSGFVFLHGKGMWAISAVMLYCAAGFLGGSCAVALTKRFGALHSAITTTARKAVTLMLSFVYFRKAFTAQHLVGATVFMVGLMTKVLGKEGKSSSPAGQSANNSPAVTPMINSQHRKYLGGREESVQLNSS 2553
            W+    Q AH G     F+V+GV+I HL    Q      GVF FLL+YG++QEY+V+ +FER  G+F+T  QF GY++ AAL R IH +T R+IP   Y  L  LQA+MQGLTN+SM +LNYPAK+LFKSSR++P M  G++   +RY ++D  VV  + +GL  F+ A+ + S +       LG+  I +AL +DAA +NIQE  + +Y +  DELI +SY  G++ +  +C+ S EL  G VFL   G+ A   ++++C+ G+ G +C  ALTK+FGAL S +TTTARKA+TL LSF  F K  T  H+VG  +F+ GL  K +        P G++ ++    T  + S     L  ++    L+SS
Sbjct:  118 WRSHASQ-AHHGHDRPSFRVIGVQISHLTRTGQFLFCTLGVFSFLLVYGFLQEYMVIHVFERRLGIFLTLCQFSGYSSLAALHRLIHADTPRRIPFGYYILLASLQALMQGLTNLSMRWLNYPAKMLFKSSRVIPTMLVGILIMKKRYKVKDYVVVALLSLGLVFFVQADVKVSPSFHP----LGIIFICMALAVDAAIVNIQEFTLRKYDASHDELIFYSYGLGSIILFIYCLLSWELFEGIVFLQSHGLRATCCLLVFCSCGYFGVTCVAALTKKFGALASTMTTTARKALTLFLSFFIFPKPATGMHVVGGLLFVSGLSVKAI--------PTGRNKDDPSIATSYLPSSSCVALKAQQTRSLLSSS 474
[Close]
BLAST of mRNA_P-littoralis_Contig18.108.1 vs. uniprot
Match: A0A6H5JSQ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSQ8_9PHAE)

HSP 1 Score: 265 bits (677), Expect = 3.310e-76
Identity = 167/317 (52.68%), Postives = 193/317 (60.88%), Query Frame = 1 
Query: 2050 QEEVMNRYASCQDELIMFSYLCGTMFVASFCVFSGELVSGFVFLH---------------------GKGMWAIS------AVMLYCAAGFLGGSCAVALTKRFGALHSAITTTARKAVTLMLSFVYFRKAFTAQHLVGATVFMVGLMTKVLGKEGKSSSPAGQSANNSPAVTPMINSQHRKYLG----GREESVQLNSSGSGXXXXXXXXXXXXXXNSSTDVLRAQSPSAAGQEGSKTSGGNSGGYPMRHRGSPTLARGTRKSAG-----ERNGVGGGGTGDSRGGRWVRKRPFSPSRSPSRNGVASPPVSGLGMMI 2892
            QEEVMN YASCQDELIMFSYLCGT++V S+C+FSGELVSGF+FLH                     G   W +S      AVMLYC AGFLGGSCAVALTK+FGALHSAITTTARKAVTLMLSFV+F+KAFT QHLVGATVFM+GL+             A +S +NSPA TP I    RK+L     G+     L+S GSG               S  D    QSPS   Q+G  +  G SGG P+RHRG+P L  G   S G     ER   G G  G   GG WVR++ FSP RSP R  +ASPPV+GLGM++
Sbjct:    4 QEEVMNVYASCQDELIMFSYLCGTVYVGSYCMFSGELVSGFMFLHEKVGAEGGGYSWHRSSRVADVGGACWQVSGPRALVAVMLYCGAGFLGGSCAVALTKKFGALHSAITTTARKAVTLMLSFVFFQKAFTPQHLVGATVFMIGLL-------------AAESVDNSPAATPFIQPTQRKHLSDAEAGQLSPAALSSGGSGGDPCSGDGYGGVRG-SHADTACTQSPSPVRQKGPASLAGASGGNPVRHRGNPKLCGGPAASGGGGVGSERGREGAGXXGQ--GGHWVRQKQFSPPRSPFRARIASPPVTGLGMVV 304
[Close]
BLAST of mRNA_P-littoralis_Contig18.108.1 vs. uniprot
Match: A0A7S2W4R9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W4R9_9STRA)

HSP 1 Score: 231 bits (588), Expect = 1.650e-62
Identity = 130/309 (42.07%), Postives = 192/309 (62.14%), Query Frame = 1 
Query: 1495 FKVLGVEIGHLPAHQQVALLAGGVFFFLLIYGYMQEYLVVKIFEREYGLFMTFLQFFGYAACAALRRGIHRETGRKIPMRTYCGLGFLQAVMQGLTNVSMMYLNYPAKVLFKSSRMVPIMCFGVVWQGRRYSMRDCGVVCFIVVGLATFMNAETRSSVNSETPSSLLGVACISLALVIDAANINIQEEVMNRYASCQDELIMFSYLCGTMFVASFCVFSGELVSGFVFLHGKG--MWAISAVMLYCAAGFLGGSCAVALTKRFGALHSAITTTARKAVTLMLSFVYFRKAFTAQHLVGATVFMVGLMTK 2415
             +++G+EIG      Q  +  G +FFF L+YGY+QE + + +F R++ LF+T LQF GY   A L+          +P+     L  LQA MQGL+N+SM YLNYPAKVLFKSSR++P M FGV +  +RYS+++   +  +V GL  FM A+  SS   +     +GV  I+ +LV+DA  IN+QE +  +Y S ++E+I  SY  G++ +   C+ +GE+  G  F H +   +  +  ++++ A GF G S   ALTKRFGAL +AITTTARKA+TL+LSF +F K F   H++G  +F+ GL+ K
Sbjct:   62 LRLVGLEIGSFSRTHQYMICTGILFFFTLLYGYLQELVSIHLFNRQFSLFVTLLQFCGYTFFAFLQWVGRDSKSNTVPIVYGITLAILQASMQGLSNLSMRYLNYPAKVLFKSSRVIPTMMFGVAFYHKRYSLKEYATIGVLVTGLLIFMLADASSSPEFDP----VGVILITGSLVVDAGIINLQEYMFTQYNSNEEEMIFMSYAGGSLVLLLVCMGTGEVNEGLAFFHHQADPLKTLVIIVVFAACGFCGVSSVAALTKRFGALIAAITTTARKALTLVLSFFFFPKPFLPGHVLGLVLFIAGLVLK 366
[Close]
BLAST of mRNA_P-littoralis_Contig18.108.1 vs. uniprot
Match: A0A6U4D8T4_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4D8T4_9STRA)

HSP 1 Score: 227 bits (579), Expect = 2.310e-60
Identity = 142/329 (43.16%), Postives = 189/329 (57.45%), Query Frame = 1 
Query: 1501 VLGVEIGHLPAHQQVALLAGGVFFFLLIYGYMQEYLVVKIFEREYGLFMTFLQFFGYAACAALRRGIHRETGRKIPMRTYCGLGFLQAVMQGLTNVSMMYLNYPAKVLFKSSRMVPIMCFGVVWQGRRYSMRDCGVVCFIVVGLATFMNAETRSSVNSETPSSLLGVACISLALVIDAANINIQEEVMNRYASCQDELIMFSYLCGTMFVASFCVFSGELVSGFVFLHG-------------------KGMWAISAVML-YCAAGFLGGSCAVALTKRFGALHSAITTTARKAVTLMLSFVYFRKAFTAQHLVGATVFMVGLMTKVLGK 2427
            VLG++I    A +Q       +  FLLIYG +QE +VV++F R +GLF+T LQF GYA  A L R    E GR++PM+ Y   GF QA MQGLTN+SM YLNYPAKVLFKSSR+V  +  GV++  RRY+  D  V   +V GL  F+ A+  SS         LGV  I  AL ID+  +N QE +M R+ +   ELI+++Y  G+ F+    +F+G L  G  FL G                    G+  I   ML + A GF G S   ALTKRFGAL SA++TTARKA+TLMLSFV F K     H+VG  +    ++ +++ +
Sbjct:  141 VLGLDITDWGAAKQYFFCTSMMCAFLLIYGVLQERIVVQVFRRRFGLFVTLLQFSGYAFFAGLNRVFFHERGRRVPMKYYLLTGFAQAAMQGLTNLSMQYLNYPAKVLFKSSRVVCTILVGVLYWKRRYAATDYIVAFLMVFGLIIFVTADIESSPEFNP----LGVGLILCALFIDSFMVNFQEIIMRRFNASHHELILYTYSWGSAFLLLLTLFTGNLWEGLRFLQGGMANDDVPVGAGAESGGSGPGLAVIVVQMLLFTACGFFGVSLVAALTKRFGALVSALSTTARKAMTLMLSFVIFPKPVLTNHVVGGLILCFAMVFRIINR 465
[Close]
BLAST of mRNA_P-littoralis_Contig18.108.1 vs. uniprot
Match: A0A7S4TB98_9STRA (Hypothetical protein (Fragment) n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4TB98_9STRA)

HSP 1 Score: 212 bits (540), Expect = 2.630e-55
Identity = 128/345 (37.10%), Postives = 188/345 (54.49%), Query Frame = 1 
Query: 1495 FKVLGVEIGHLPAHQQVALLAGGVFFFLLIYGYMQEYLVVKIFEREYGLFMTFLQFFGYAACAALRRGIHRETGRK---------------------IPMRTYCGLGFLQAVMQGLTNVSMMYLNYPAKVLFKSSRMVPIMCFGVVWQGRRYSMRDCGVVCFIVVGLATFMNAETRSSVNSETPSSLLGVACISLALVIDAANINIQEEVMNRYASCQDELIMFSYLCGTMFVASFCVFSGELVSGFVFLHGKGMWA---------------ISAVMLYCAAGFLGGSCAVALTKRFGALHSAITTTARKAVTLMLSFVYFRKAFTAQHLVGATVFMVGLMTKVL 2421
            F VLG++I H     Q  L A GVFFF L+YG+ QE + V+IF R+ G+F+   QF  Y A + L R      G                       +P+  Y GL  ++A+   +TN++M Y+NYPAK L KSSR++  M FGV+   ++Y ++D  VV  +V GLA FM+A+     NS T   +LGV  ++++L+ D A  N+ E +MN++  CQDE I   Y   T+ + +  +F+G+L  GF  L   G  A               I+ + L+   GF G SC+ A+TK FGAL ++IT+T RKA TL LSF +F    T +H+VG  +F++ L+ K L
Sbjct:  152 FLVLGIDISHRSRKAQFLLSASGVFFFSLLYGFFQELISVQIFGRKLGMFLAASQFSIYTAWSYLLRTFVHSKGSAPTSISSSPSKTKTSNAFPTSTVPITMYIGLSLIRALDLAMTNLAMQYINYPAKTLMKSSRIIWTMMFGVIVLKKKYKIQDYAVVLLMVTGLAIFMHADA----NSSTIFDMLGVVMLTVSLICDGAVSNMSEAIMNQFNVCQDEFIFNLYSIATIAIVAGAIFNGDLFLGFERLLTPGTLAEIEAGEMPTWSVTGKITVLFLFSTTGFFGSSCSAAITKNFGALITSITSTVRKATTLFLSFAFFPNTCTLEHIVGIVLFLLALVGKTL 492
[Close]
BLAST of mRNA_P-littoralis_Contig18.108.1 vs. uniprot
Match: A0A7S4A942_9STRA (Hypothetical protein n=2 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4A942_9STRA)

HSP 1 Score: 211 bits (537), Expect = 3.720e-55
Identity = 130/354 (36.72%), Postives = 193/354 (54.52%), Query Frame = 1 
Query: 1501 VLGVEIGHLPAHQQVALLAGGVFFFLLIYGYMQEYLVVKIFEREYGLFMTFLQFFGYAACA-ALRRGIHRETGR------------------KIPMRTYCGLGFLQAVMQGLTNVSMMYLNYPAKVLFKSSRMVPIMCFGVVWQGRRYSMRDCGVVCFIVVGLATFMNAETRSSVNSETPSSLLGVACISLALVIDAANINIQEEVMNRYASCQDELIMFSYLCGTMFVASFCVFSGELVSGFVFLHGKG--------------MWA----ISAVMLYCAAGFLGGSCAVALTKRFGALHSAITTTARKAVTLMLSFVYFRKAFTAQHLVGATVFMVGLMTKVLGKEGKSSSPA 2451
            VLG++I HL    Q  + A GVFFF L+YGY+QE L V++  R+ GL++  +QF GY   A  LR  ++R+  R                   +P + Y GL  L+AV   LTN++M Y+NYPAK L KSSR+V  M FGV    +RY + D  +V  +V+GLA FM+A+  SS   +     +GV  ++++L+ D A  N+ E +MN+Y   QDE I   Y    + + +     G+L  G +++   G              +W+    I+ ++L+ + GF G SCA A+TK FGAL  +IT+ +RKA TL LSF+ F    T QH+VG  +F+  L TK + +  K   P+
Sbjct:   61 VLGMDISHLSRTGQFFICASGVFFFSLLYGYLQELLSVQLCSRQLGLYLATVQFTGYTLLAYVLRSYVYRKQNRGKATAYAKNSHSVPSGQLTVPSKLYIGLSLLRAVDLALTNLAMQYINYPAKTLMKSSRVVFTMIFGVCITQKRYGLTDYAIVLCMVIGLAIFMHADATSSAVFQP----VGVVMLTVSLMCDGAITNMSESIMNKYNVGQDEFIFRMYSIALIAIFAAAAAKGDLQEGMIWIREPGTYEEQQNNVPLDQRLWSSTGKITVIILFSSMGFFGSSCAAAITKNFGALSMSITSVSRKATTLFLSFLLFDNECTYQHIVGIIIFISALTTKSIRRRNKKRKPS 410
[Close]
BLAST of mRNA_P-littoralis_Contig18.108.1 vs. uniprot
Match: A0A1E7EVI5_9STRA (UAA-domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EVI5_9STRA)

HSP 1 Score: 206 bits (523), Expect = 2.920e-54
Identity = 134/368 (36.41%), Postives = 202/368 (54.89%), Query Frame = 1 
Query: 1510 VEIGHLPAHQQVALLAGGVFFFLLIYGYMQEYLVVKIFEREYGLFMTFLQFFGYAACA-ALRRGIHRET--GRK----------------IPMRTYCGLGFLQAVMQGLTNVSMMYLNYPAKVLFKSSRMVPIMCFGVVWQGRRYSMRDCGVVCFIVVGLATFMNAETRSSVNSETPSSLLGVACISLALVIDAANINIQEEVMNRYASCQDELIMFSYLCGTMFVASFCVFSGELVSGFVFLHGKGMWAISAVMLYCAAGFLGGSCAVALTKRFGALHSAITTTARKAVTLMLSFVYFRKAFTAQHLVGATVFMVGLMTKVLGKEGKSSSPAGQSANNSPAVTPMINSQHRKY-LGGREESVQLNSS 2553
            ++I H+  + Q  + A GVFFF L+YG++QE L V++  R+ GL++  +QF GY   A  LR  ++++   GRK                +P + Y GL  L+A    +TN++M Y+NYPAK L KSSR+V  M FG +  G++Y++ D  +V  +V GLA F++A+  SS    +     GV  ++++L+ D A  N+ E++MN+Y   QDE I   Y    + +++     G+L  G V   GK    I  V+L+ + GF G SCA A+TK+FGAL  +IT+TARKA TL LSF+ F    T QH++G  +F+  L TK + +  K  S       +     PM  S      LGG+  S+   SS
Sbjct:    1 MDISHVSRNGQFLICASGVFFFSLLYGFLQELLSVRLCSRQLGLYLATVQFVGYTFLAYILRTYVYQKQNPGRKTPKIISSGSCGVATLIVPFKLYLGLSLLRAFELAMTNLAMQYINYPAKTLIKSSRIVFTMIFGALISGKKYNLTDYAIVMCMVCGLAIFLHADATSSAVFHSS----GVVMLTISLMCDGAITNMSEKIMNQYKVGQDEFIFRMYSIALVAISAAAWAKGDLADGMV-STGK----ICVVILFSSMGFFGSSCAAAITKQFGALSMSITSTARKATTLFLSFLLFDNECTMQHIIGIIIFICALTTKSIRRNKKKRSKGSVKDRHQ---FPMQKSMSMDLELGGKSTSISRESS 356
[Close]
BLAST of mRNA_P-littoralis_Contig18.108.1 vs. uniprot
Match: A0A7S2GWQ4_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2GWQ4_9STRA)

HSP 1 Score: 207 bits (527), Expect = 3.270e-53
Identity = 134/377 (35.54%), Postives = 205/377 (54.38%), Query Frame = 1 
Query: 1429 LNDRESNVQQWKRDQDQWAHLGFKVLGVEIGHLPAHQQVALLAGGVFFFLLIYGYMQEYLVVKIFEREYGLFMTFLQFFGYAACAALRRGIHR-----------------------ETGRKIPMRTYCGLGFLQAVMQGLTNVSMMYLNYPAKVLFKSSRMVPIMCFGVVWQGRRYSMRDCGVVCFIVVGLATFMNAETRSSVNSETPSSLLGVACISLALVIDAANINIQEEVMNRYASCQDELIMFSYLCGTMFVASFCVFSGELVSGFVFLHGKGM-----------WA----ISAVMLYCAAGFLGGSCAVALTKRFGALHSAITTTARKAVTLMLSFVYFRKAFTAQHLVGATVFMVGLMTKVLGKEGKSSS 2445
            L+D E  +    R +D  +   F VLG +I H+    Q  + A GVF F L+YG++QE + V+IF R+ G+F+   QF GYAA + L R   +                       +    +P++ Y GL  L+A    +TN++M Y+NYPAK L KSSR++  M FGV+   +RY M+D  +V  +V GLA FM+A+  +S   +    ++G+  ++++L+ D A  N+ E +M+++A  QDE I   Y    + + +  V +G+L+ GF  L   G            W+    I+ + L+   GFLG SC+ A+TK FGAL  +IT+TARKA TL LSF +F    T +H+VG  +F++ L+ K L K  KS S
Sbjct:  161 LSDPEIEID---RGEDMDSADKFLVLGFDISHMSRRSQFLICAFGVFSFSLLYGFLQELISVEIFSRKLGMFLAAAQFSGYAAWSYLLRVFVKINHGSPSQNPSSPNSSPSKNKVADPTNTVPIKMYIGLSLLRAFDLAMTNLAMQYINYPAKTLMKSSRVIWTMMFGVIVLRKRYRMQDYAIVLLMVAGLAIFMHADASNSAVFD----VVGIIMLTVSLICDGAVSNMSEAIMSKFAVGQDEFIFHLYSIALVAILAGAVLNGDLLLGFEHLSVPGTVEEIETGQVPTWSVVGKITVLFLFSTTGFLGSSCSAAITKNFGALTMSITSTARKATTLFLSFAFFPNLCTWEHIVGIVLFLLALVGKSL-KASKSGS 529
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig18.108.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRQ9_ECTSI1.230e-29664.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JV49_9PHAE3.450e-17764.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
W7UCB2_9STRA7.110e-7742.16Adenosine 3-phospho 5-phosphosulfate transporter 2... [more]
A0A6H5JSQ8_9PHAE3.310e-7652.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2W4R9_9STRA1.650e-6242.07Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A6U4D8T4_9STRA2.310e-6043.16Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S4TB98_9STRA2.630e-5537.10Hypothetical protein (Fragment) n=2 Tax=Ditylum br... [more]
A0A7S4A942_9STRA3.720e-5536.72Hypothetical protein n=2 Tax=Pseudo-nitzschia aust... [more]
A0A1E7EVI5_9STRA2.920e-5436.41UAA-domain-containing protein n=1 Tax=Fragilariops... [more]
A0A7S2GWQ4_9STRA3.270e-5335.54Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig18contigP-littoralis_Contig18:495580..506451 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LRQ9
Preferred nameSLC35B3
PFAMsUAA
Model size4240
Max annot lvl2759|Eukaryota
KEGG koko:K15277
KEGG TC2.A.7.11.5
Hectar predicted targeting categoryother localisation
GOsGO:0000137,GO:0000139,GO:0000295,GO:0003674,GO:0005215,GO:0005346,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005794,GO:0005795,GO:0006029,GO:0006082,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006820,GO:0006862,GO:0008150,GO:0008152,GO:0008509,GO:0008514,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009987,GO:0012505,GO:0015012,GO:0015075,GO:0015215,GO:0015216,GO:0015605,GO:0015711,GO:0015748,GO:0015865,GO:0015868,GO:0015931,GO:0015932,GO:0016020,GO:0016021,GO:0018130,GO:0019438,GO:0019538,GO:0019637,GO:0019693,GO:0022857,GO:0030166,GO:0030173,GO:0030176,GO:0030201,GO:0031090,GO:0031224,GO:0031227,GO:0031228,GO:0031300,GO:0031301,GO:0031984,GO:0031985,GO:0033865,GO:0033866,GO:0033875,GO:0034030,GO:0034032,GO:0034033,GO:0034035,GO:0034036,GO:0034220,GO:0034641,GO:0034645,GO:0034654,GO:0042175,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044272,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0046390,GO:0046483,GO:0046963,GO:0046964,GO:0050427,GO:0050428,GO:0051179,GO:0051234,GO:0051503,GO:0055085,GO:0055086,GO:0071702,GO:0071704,GO:0071705,GO:0072348,GO:0072521,GO:0072522,GO:0072530,GO:0090407,GO:0098588,GO:0098656,GO:0098791,GO:0098827,GO:1901135,GO:1901137,GO:1901264,GO:1901293,GO:1901360,GO:1901362,GO:1901505,GO:1901564,GO:1901566,GO:1901576,GO:1901679,GO:1901682,GO:1902559
Exons11
Evalue1.21e-305
EggNOG OGsCOG0697@1|root,KOG1582@2759|Eukaryota
Ec32 ortholog descriptionUAA transporter
Ec32 orthologEc-08_002070.1
Description3'-phosphoadenosine 5'-phosphosulfate transmembrane transporter activity
Cds size2553
COG categoryU
BRITEko00000,ko02000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig18.108.1prot_P-littoralis_Contig18.108.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig18 495925..505109 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789864.6545312-UTR-P-littoralis_Contig18:495579..4959241680789864.6545312-UTR-P-littoralis_Contig18:495579..495924Pylaiella littoralis U1_48UTRP-littoralis_Contig18 495580..495924 +
1680789864.791998-UTR-P-littoralis_Contig18:505109..5064511680789864.791998-UTR-P-littoralis_Contig18:505109..506451Pylaiella littoralis U1_48UTRP-littoralis_Contig18 505110..506451 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789864.6684318-CDS-P-littoralis_Contig18:495924..4960031680789864.6684318-CDS-P-littoralis_Contig18:495924..496003Pylaiella littoralis U1_48CDSP-littoralis_Contig18 495925..496003 +
1680789864.6792345-CDS-P-littoralis_Contig18:496722..4968951680789864.6792345-CDS-P-littoralis_Contig18:496722..496895Pylaiella littoralis U1_48CDSP-littoralis_Contig18 496723..496895 +
1680789864.6900637-CDS-P-littoralis_Contig18:499619..5003691680789864.6900637-CDS-P-littoralis_Contig18:499619..500369Pylaiella littoralis U1_48CDSP-littoralis_Contig18 499620..500369 +
1680789864.704586-CDS-P-littoralis_Contig18:501079..5013311680789864.704586-CDS-P-littoralis_Contig18:501079..501331Pylaiella littoralis U1_48CDSP-littoralis_Contig18 501080..501331 +
1680789864.7179198-CDS-P-littoralis_Contig18:501661..5018231680789864.7179198-CDS-P-littoralis_Contig18:501661..501823Pylaiella littoralis U1_48CDSP-littoralis_Contig18 501662..501823 +
1680789864.7292264-CDS-P-littoralis_Contig18:502112..5022261680789864.7292264-CDS-P-littoralis_Contig18:502112..502226Pylaiella littoralis U1_48CDSP-littoralis_Contig18 502113..502226 +
1680789864.7385416-CDS-P-littoralis_Contig18:502555..5027321680789864.7385416-CDS-P-littoralis_Contig18:502555..502732Pylaiella littoralis U1_48CDSP-littoralis_Contig18 502556..502732 +
1680789864.7506883-CDS-P-littoralis_Contig18:503251..5033891680789864.7506883-CDS-P-littoralis_Contig18:503251..503389Pylaiella littoralis U1_48CDSP-littoralis_Contig18 503252..503389 +
1680789864.762297-CDS-P-littoralis_Contig18:503751..5039701680789864.762297-CDS-P-littoralis_Contig18:503751..503970Pylaiella littoralis U1_48CDSP-littoralis_Contig18 503752..503970 +
1680789864.7725208-CDS-P-littoralis_Contig18:504320..5044631680789864.7725208-CDS-P-littoralis_Contig18:504320..504463Pylaiella littoralis U1_48CDSP-littoralis_Contig18 504321..504463 +
1680789864.7831593-CDS-P-littoralis_Contig18:504763..5051091680789864.7831593-CDS-P-littoralis_Contig18:504763..505109Pylaiella littoralis U1_48CDSP-littoralis_Contig18 504764..505109 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig18.108.1

>prot_P-littoralis_Contig18.108.1 ID=prot_P-littoralis_Contig18.108.1|Name=mRNA_P-littoralis_Contig18.108.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=851bp
MHARGHGGITLHYRNNSGPRSSSRMEVATDAGSTMPEYSSTSNEGMEYDE
QNLVAPGSGTAEGYSRVGSGADVRLNQHYADPGKDAAQALSGGLAVSMAN
ANGSGHHHHHNGVAGVGDAHQNARGVGGGRQDQPDEQRDNLKGHDEKQTL
VSGMGNLLKRARRGVNSYFSALARQQVKHARQRRERERMMSSNLDFLVDA
EEGVSLLTQVADGHEQTTNGGILHRSQSAVFVPSRLPQQANTSSSVAVLE
TRSAGMASDAGELGDVNEAEVFLQNEQRDHGAGGRLEAGGGTMKRGGRST
LTTGDLVRLYREEGQGAGEDSAQDEDRERQRKSQGNIVGGRPFRWSLRPR
RTASKTSSMPRLNDRESNVQQWKRDQDQWAHLGFKVLGVEIGHLPAHQQV
ALLAGGVFFFLLIYGYMQEYLVVKIFEREYGLFMTFLQFFGYAACAALRR
GIHRETGRKIPMRTYCGLGFLQAVMQGLTNVSMMYLNYPAKVLFKSSRMV
PIMCFGVVWQGRRYSMRDCGVVCFIVVGLATFMNAETRSSVNSETPSSLL
GVACISLALVIDAANINIQEEVMNRYASCQDELIMFSYLCGTMFVASFCV
FSGELVSGFVFLHGKGMWAISAVMLYCAAGFLGGSCAVALTKRFGALHSA
ITTTARKAVTLMLSFVYFRKAFTAQHLVGATVFMVGLMTKVLGKEGKSSS
PAGQSANNSPAVTPMINSQHRKYLGGREESVQLNSSGSGGGTCNGGGAGG
QGGNSSTDVLRAQSPSAAGQEGSKTSGGNSGGYPMRHRGSPTLARGTRKS
AGERNGVGGGGTGDSRGGRWVRKRPFSPSRSPSRNGVASPPVSGLGMMIA
*
back to top

mRNA from alignment at P-littoralis_Contig18:495580..506451+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig18.108.1 ID=mRNA_P-littoralis_Contig18.108.1|Name=mRNA_P-littoralis_Contig18.108.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=10872bp|location=Sequence derived from alignment at P-littoralis_Contig18:495580..506451+ (Pylaiella littoralis U1_48)
TTGTTTCTTCTTTTCCCTAGAATAAACACAGATTGTAGATTGGGGTCACG
GGGTAACAACGCACACACACGACACAGCCATCGACAACAAGCCTACGAAG
GACAGGAACGAGGAGTGGTGCCGGGGAGAGCTAGGGAGCGCTAGAAAGGC
CAGGGGGGAAGCAGGACACCAAAGCATCGGTGTAAAATCGGACGAAGACA
GGAAACGTGTTCGAAAGGAACCGCTTATTTAGCTGGATAAGGGCACTCGC
TCCTCCCTGTGAGAAGCAAGCGAACATTTATTTTCATTACCCCCCATACC
CACCGCGTTTGAGCTGACCCATGCTGACGGCTGAGAACTAAAGTAATGCA
CGCTCGGGGCCACGGAGGCATCACGCTACACTACCGAAATAATAGTGGAC
CGCGCTCTTCCTCGAGGATGGAAGGTGGGTCTGTAGTGGGATACGCCACA
CGTTTCTAGAAAATGACGGTAAACAGAGAGGAACCCCTGCAAAGCACAGA
TCTCCCTCGCCGCATAATCACCTGTTCTCACCACCAGGCATGTAGGAACG
AAGAGAGAGAGAGAGAGAGAGAGGAGGTACACCAGAAAGACCTGTGGGGT
GTGTACTCTAGTGAGGACGGCAACGGCTCACTGCTGTATCACAGACATCA
TATGAAACCAACAGCCATGGAGAGAAGAGAAAGTACGTTGGCCCTCTCTC
ACACATGCCACACACGAGTGATACCACAAAAAACAAAATACGGGTGACAT
CACCAACGGATGTGTCCCCTCAGACTCGGAAGAATTCTCGCTACGACGAG
GGTGACTCTGTGCGGATGTTCGAGTATCGCGCGAATGTTTTGGCTCATTC
CTACGGTTACCTGCTGTACGAAGCACCGAACCATATTTTAGTGCTCGGGC
TTTATCCGAGGTCATGGGTATTGACTGGTCCATTTATGAGAAATAAAAAG
TCAGAAAACTCCGTGGAAAGAAGTTCTCACAGCAGCTCCCGTGCTCCGGT
ACAGCGGTACTGCGGGGTATTTAGATACCTTGTGGTATGATATGAAATAT
TAATATTCATGCGTGTCGAGTGAATTATTCTCCCTTGATCATCTGATGGT
TGTCATCTTCCGCCCCTGCTCGTGCTTTTGTACTGCGGTCAAGTGGCGAC
AGACGCGGGCAGCACGATGCCGGAGTACTCGTCTACCAGCAACGAGGGAA
TGGAATATGACGAGCAGAATCTCGTCGCGCCAGGGTCGGGGACGGCGGAA
GGGTACTCACGCGTGGGGTCGGGTGCGGATGTGCGGCTCAATCAGCACTA
TGCTGACCCAGGGAAGGCAAGTTTTCTTACATATTATATGATCCCTCGGA
TTTGGCCACGCCCATGTTCTAATAGGCGAGATACCCAGCAGACCCGCCTG
AACTCCTAAAACATTGGTCAATAGCTTTATCATACGAAGTATATACGTCT
AGGTAAGCGCTGATTTCCGTAACTTGGAGGGGGCATGGGAGCGGGGTGTC
CCACGCAGTCCATCACGGGGCTCTAGAGGTCACTCGGTAAAGGCTTCTCG
ACGAACTCCTCGATGTCCTCTCGCACACCCACCATCTCTTTATCTTTACC
TTCCAAACCATCTGTGTACCGCTCGCCCCGGTCGTTCAGTAATCAGCAGG
CGAAGTTTACCGATACTCAAGCGTGTCGGATTTTTTTCTTACGGCAGTCG
TTCTTGGGAGTGGAAAACGACTTTGTCGTGTGTATGTGAACACATTCGAC
GCACGAAAACAACAGCAGTCGGCGGGGGGACGGTTTATCCCTTTTCGCGA
CGAGGCATAGGTAACGCCCACTCGTATGGAAAACCCGAGACCCGAAACAT
CAAAATGTCCAATCCAAGGGTTTCACACGAGGAATTTGAATCCAAATTCC
AAGGTCTTTTTAAAATGTTTGGATTTGTTTCTTTTGGACGATACGTAAAC
GAACAAAGAAAAAAAACATCAACTTGTTCGCCTCTTTCTGGACGAGGATC
CATTGATGGATTCCAAACCAAAAGACCTCGGGTTCCAACTTGGAATCCGT
CGCGCGCGGCCACGAGGATACGCCGCAGTGTTTCACAGCCCACACCAAAA
ACAAAAACACCCACATATCATACGAGCGCACGAAGACACGAGCCAGATGC
GTACTCAAGCTCCGTGCGATTCTGGCCTTGCTTTCAATCACGCTTGCCGC
TCTACACCATCAACAGCAAGCAGCAGTTTCTCAAAATTAAGCCAAACCGC
CTGCCGTCCATCCGACAACCCCCCCCTACTTCCATTTGCTGTCCAGATTT
TCCGATTTTCCCATACGTTGCCCCCTGCCTGATTCTCCCAGTTGGAACAT
CAGGCTCGGAAAATGATTTTCCAACTCGGTAAATCCCTATTGTCCATCAC
ATACGAGTGAGTCTTAATAGCTGTGAGGCACAAAAGACAAGAACCGCAGA
AGGTGGGTGGAGGAAAAAAAAAAGAGGAATGGTCAAAAACGGGTATACCC
GGTGGTTTTGTGGCCATTATCGGGTACCCTTCTTTTCCGCCGATGGAAAT
GGTCTCAGGGAGCAATCCCATTGGCCAAACCGCGCCGCCACCCGGTCCTG
GCCAGATTTCTGCCAGGTACCTGGTTTTGGCTACTTTCCCCGCGGGAGCT
ACCCGATTTGCACATACATTACCCGAAAGTGGCCCGACACAAACGCTATA
ACTGAGTTATATTTCATGTTTTACACTGCTGCTGCTGTAGTTCATAATGC
ACTTCGTATCATATTGTTGTGCTGCCATATCCCGTCATGTATCTCCTCTC
TGTCACACACCACACACACATCCATGCACGCAGACGCACACACACACACG
CACGCGCTTACGACAGTCGGCAGCAGCAGTAGTAGTGGTGGTGCTACAGG
AGTAGTACAGTAAGGGTATTGCGTCCGAGACTGGCATCATCGTCTATGAT
CATACGCATACGATACGAAGTACAAAATGAACTACAGCAGCAGCAGCAGA
CAGTCAGTGTAAACATGAAATACTTCGAAACTTAAGTACCAGGTATTACT
TAGTGTCGGGCCACTTTCGGGTAGTGCCACTTTCGGGTAGTGTATGTGAA
AATCGGGTAGCTCCCGCGGGGAAAGTAGCCACAACCGGGTATGCCTGGCA
GAAATATGTCTTGTGTTACCCCGGCTGGTGCCCATTTCGTACCGAAGGGT
GTAGACTGGTGCCCAGAATAAACGGGATGTAAACACACAAACAAAAACAC
ACGCGCGCCCGCACACACACACTGCTGAGTCATCGGGGGCGCCTCTCTGA
TATCATTCGACGCACCGAAGGAACGAAAAAGAGCACAAGTAGACGAAACG
CGGGGAAAATCGAGCTACCCAATACGGCTGTAATCGTATGAGACATTTAG
AATTCTCCGACAGAATGAAATGGATCCCGAGAGATCACATAACTGTTGGA
CGAACAACAGAATGAAAGAAAAGTCAAGCCCATAAAAACAAAATCAAAAC
CAAAATCAGATGATTGTTGGAACCACTGGCTACGTTGTTGTTGACGGTTT
CATACGAACTCTGGAGAAATGCTTTTGACGACGTCTTGTGCCACTGCTGC
TGTCTATCCCGATATTTAGACATTTTTCCCCACTCAAAAATCAGTTGGAA
AGTAATGGTTGGCCCCCAATGAAAGTTTTAGCGACGAGTAGTCGGGTCAT
GTCTTCCGATAACTTTTCCCACCGATTTCTCTCACTACGCTTGTCATTCA
TCCCAAACCACGTGAACAACAGAGAAACAACCGAGTGCTGCTGTTGCTGT
TCTCGAGAATTCACCTTGTCCAAGGAGGGCACAAAGTACACATCGAGCAC
AACCCAAATCACGTCAACAACTTTCAGGGGCAAAGAAAAATACTGCTGTT
TCTGTGCACTGGATTTGCCTTCCAGTGAGGGCACGAAGTGTACTTAAGTC
ACATGCCACCCCACCCGTTCTGCCTTGACACCATTTGCCTTATTTTGTTC
ACATTGCACCCCACCGGCTCTGCATCCCGTTGCCGTACAGGATGCAGCGC
AAGCGCTGTCGGGGGGCCTGGCGGTGTCGATGGCCAACGCTAACGGCAGT
GGTCACCACCACCACCATAACGGAGTGGCAGGAGTGGGAGACGCACATCA
AAACGCGCGAGGAGTCGGTGGGGGCCGGCAAGACCAGCCGGATGAACAGA
GGGACAATCTAAAGGGTCACGACGAGAAGCAAACCCTGGTGAGCGGGATG
GGCAACCTGTTGAAACGCGCACGACGCGGGGTGAACTCCTACTTTTCCGC
TCTGGCTAGGCAGCAAGTGAAGCACGCGAGACAGCGGAGGGAGCGCGAGC
GCATGATGTCGTCGAACCTCGACTTTCTCGTGGACGCCGAAGAGGGAGTC
AGCCTCCTCACCCAGGTAGCCGATGGGCATGAACAGACGACAAATGGCGG
AATTCTGCACCGATCCCAGAGTGCGGTGTTCGTGCCTTCAAGGCTGCCGC
AGCAGGCGAACACATCCAGCTCCGTAGCAGTTCTGGAAACCAGGAGTGCT
GGAATGGCCTCAGATGCGGGAGAGCTGGGGGATGTCAACGAGGCAGAAGT
GTTTCTGCAGAATGAGCAGCGGGATCACGGGGCAGGGGGCAGATTGGAAG
CCGGAGGGGGTACGATGAAGCGTGGCGGGCGGTCCACGCTGACGACGGGC
GACCTGGTCCGGTTGTATCGGGAAGAGGGCCAGGGGGCTGGGGAGGACTC
AGCGCAGGACGAGGATCGAGAGCGGCAAAGAAAGTCCCAGGTTAGTGCTT
GGTTGCTGGGATCTTCATGTAGGACCGGAGTTGAGTGAGGGTGCGAGACA
GGGGTGTTGTTTCGATGTTGCGCTGCTTTTACGCGGTGTACAAAGCACCG
CTCTTTTCTGTGCCCGCGGTTCATGCGCCGTTGTTGTAAGCCGTTTATGT
TCTCTCTTGTAGTGTCATAGCTTCCGGTGCGTGTTGTTCTTTGAAGACAC
CTGTAGTACGTGGAACCGGGGCGATGTCAAGCGACATTTCCCGGGCTGTC
GTAGTGTCATTTGTTCGGACGTCTTCACTACAATACGGCTTTACATTTGT
TCCCATAGGTCTGGTGCCACTGCTGTGGCGACCTTGGGAGCCCTGCTCGT
TCCGCAGGACACGAGCAAAAGCGTCCGAAAACAGGAGAGATAGATTCATA
CGTTAAAGAAAGTTGCTTGAAATCTACTACTGATTTTATCGTTGTGTTGT
GTGCCATTTGTCGCCGGACACCACACGATTTGTGGAAACCGTTAGCTTCT
ACTCCGTCGCAACTGCGACCTGATGAACAAGGGCTGTACCTACAGCGTTA
CGACAGTAGCTGCTGACAGCTGGTGAGCGTTGTAAGCACAGTAGTAACAC
GCAGTGCCATTCCTCCCGCACTGTGCCATGTTGGCTGTTGGCTGATTGTG
GCATTTTCCGCCTCAAAACATGTACGCGATCCTCCTGTAATGTGCGGTAG
GGAAATATTGTAGGCGGCCGTCCCTTCCGGTGGAGCCTGAGGCCTCGCCG
AACAGCGTCGAAAACGTCCTCGATGCCGCGGCTTAATGATCGCGAGAGCA
ACGTACAGCAATGGAAGAGGGATCAAGACCAGTGGGCCCACCTCGGCTTT
AAGGTGCTCGGTGTGGAGATTGGACACCTGCCTGCGCACCAGCAGGTAGC
TCTGCTCGCTGGAGGCGTCTTCTTCTTTCTCCTCATCTATGGTTACATGC
AGGTGAGGTTTTTGCGGAGCGTGGATTGGCCGCGTTGTGAGTGTCACAGC
GAGGCTGCTGAGAAAAAAGATGAATTGCATTTGATGATGCTCAGTTTCTC
GGCTGGACTGCTGTGGAGCCCTTTGTAGCCTTTGCGAAGGTCAAATTTTA
ATTGTTCAGGGAAAGACCATACTAGCAGTAGCTTGGACGGGTGTCAGTCT
GTGTGTCCCGAGAGATCGGAACCTTCGTAAACACACGGGCGAGTTATGAT
GGCGGCAACTCTCACACATGAACTTGCTCGTTATTTTTGGACGTTCAACA
TCGCGTCGTTTGTTCGTGTCCCCTGGCCACAGGAGTACCTTGTCGTGAAA
ATCTTCGAGCGCGAATACGGTCTTTTCATGACCTTCCTTCAGTTCTTCGG
TTACGCGGCGTGCGCGGCGTTGCGGAGGGGAATTCACCGTGAGACCGGCC
GAAAAATTCCCATGCGCACGTACTGCGGGTTGGGATTCCTGCAGGTGTGC
GAAGTAATTATTTTGAAAAGAGCAAACCCAATTTGTAACAGCGGTCAGTT
CACCGACGTTTGTGAAAACGCGCCCGACGGTCCTCTCATCGGCTTTGTCT
AGGTTGAGCAAAGCGAACTCTGTAAATCCTGAAATGCTCATTTCATTTGC
GAGTTTCGTTTTGTCTCCACCTGCATTTCAGTACCCCCGCGTATTTGTTC
AATTTTGTCAAATATTTCCCGGTCAAACGTTCCCTGTTGTGCCGCATCGT
TGCTCGTTCCATGCTGCTATCCCTTCTGTGCAGGCTGTGATGCAGGGTCT
GACGAACGTGTCGATGATGTACCTCAACTACCCGGCGAAGGTGCTCTTCA
AATCGTCCAGAATGGTTCCCATCATGTGTTTCGGGGTGGTGTGGCAGGTA
CGCCTCGATCCATCAACCATCTCGTATGTTTCATTGCTGTGCGAAATTTC
TCCGAGTACAGCCACAAAAGCTGCGAAAGGTCAGGCAGTATAATGAATCC
TGCGCGCCTTTCAGCAAGCAACACACACCTTGATAAACTACAATGAACAT
TATTTGGGAGTGTATTTTTTCGTAGGCTTTACAAACGCATCTGTATACTC
TCGACTGAAATGCACAGCAAGGTTCTGAACATGCGTTTCCCAACCGACAG
CGTGCTCGCTCCACTCATGCTAAGCACCTCTTGCCCACGATTTGTTTTCC
GCGTGCCGTCGCAACTGATCCCGCAGGGCCGGAGGTACTCGATGAGAGAC
TGCGGCGTGGTTTGTTTCATAGTTGTAGGTCTTGCCACGTTCATGAATGC
GGAGACTCGTTCCTCGGTGAACTCAGAAACGCCTAGCAGCCTGCTGGGGG
TGGCGTGCATTTCCCTTGCGTTGGTGATCGACGCGGCCAACATCAATATC
CAGGTGCGTTGATCACTTTGCAGTCGATGGATTTCGGCGCACTAGGAGAG
AGCGCGTGCACGAAGGTTCCTTTTAGTGCACGAGAACATCGAAGGGAGAG
TCGGGGGTATCAATGCGCCACGTTGGGTATTTGGCCTCAACATGTTTTCT
TTAATTTTTGCCCGCTCATGAAACGCCCTCCGATTTGCAGCAGCAACATG
GGTCGTGTCACGAACACACGAACACGCGTGAAATATAAAATTTGGGCAAC
GGCAATACCGCGGACTTCGCTGTGTGATACGGAATGTTACTGATTTATGC
AGTGGTTTAGTTTTTACCTCCCATCCCAACGCCAGAGGAAGTCACAGAAC
ACAACGGAGTATGAGTGCGTGCCTCGACAGTCCACCCTTGCATTGTTCCC
CTTCCCCCCCATTCCTCTTGTTTCGCCCCCTGACCCTGGCCTCAATCACC
CGCGACCCCCCCCCCCCCCTCTCTCTCTCTTGCACCCTACGGATTTTTCC
ACTTGTCTTGTGAATCCTCCAGGAGGAGGTGATGAATAGGTACGCCAGCT
GTCAGGACGAGCTCATCATGTTCTCTTACCTCTGCGGCACCATGTTCGTG
GCGTCCTTCTGCGTGTTCTCGGGCGAGCTGGTCTCTGGCTTCGTTTTCTT
GCACGGAAAGGTGAGACTTTAAAAGACATAACAGGAATCCCTTTTTGTTA
AGCAGGCTTTCGTTGTTTTTACATATTTTGCTCCACAGACCTCAGGCTTT
GTGTTGTATTCCTTTGCTACGTTTAGAGTTATCGACTAGCACCGGTATAC
GAAGTAGTTTTTAAACTCTAGGCTTCGCTGCACGACGAAGTGATCAACTT
TCGTCATTTATCGACAACACCCGTACAAGCGACCTAGGCTAATTCTACGT
TGCCGGTATTCCGTACTACCCAAGCGACCACCCGTCACCCTTCATCCTGC
TTGCCCTCATGAGTTCCTCCCCCCCCCCTACCGCTTGTCCACGCGGTTCC
CGTGCATTTCCTTATGCATCAGGGCATGTGGGCGATTAGCGCGGTGATGT
TGTACTGCGCGGCTGGGTTTTTGGGAGGGAGCTGCGCGGTGGCGTTGACG
AAGAGGTTCGGCGCACTGCACTCTGCCATCACGACGACGGCGCGAAAGGC
CGTGACCCTCATGCTGAGCTTCGTCTATTTCCGAAAGGCCTTCACCGCAC
AGCACCTCGTTGGCGCCACGGTGTTTATGGTCGGCCTCATGGTGAGCCAC
GGACCATGCTGTCGGGGTGGCATGCATCGTTTATACGGAGTATACAGCAG
TATATTTTTCTCGAAAGTCGAGTTTCAATTTCTGGATCAGCTTGGCGCAG
AGTCGTTTTGATGTGGACGTGCGTTCAGTGAGTGCGCGAACTAACAGTAC
GGTTTTGCCCGGTAGAGAAGGGACAAAGCAATATCAAAGCGTTTATTTTT
TCCGATGTCGTTCGTTGTATTTCTCGTGCTCGCTCGCCCGAAATCTTCCC
GTTCTCACATGTACCGGTGTGTGTGTTTGTATGTCCTCCCTGTACTTTCC
CCGCTTGGTTCTCGTTTTGTTTTGTGTGCGACGTACGCCAGACCAAGGTG
CTGGGAAAAGAGGGCAAGTCATCCTCACCGGCGGGGCAGTCGGCCAACAA
CTCACCCGCTGTGACGCCCATGATAAATTCGCAACACCGAAAATACTTGG
GCGGCAGAGAAGAGTCCGTTCAGTTGAACTCCAGGTATGTTTTTCGTCAA
AGAACAACGGTCGTGTCTGACAGGGGGAGTTTCGACAGTAGTCTTGAAGG
GGTCAACAGGATGCCATGACACTTCGTTCTGCAGAGCGCTGATGTTTGGG
CCTCTTTGAGCTGATACTGGTGCTTTGGAACCGGTTTAATCGCCCATTAT
CTAGCAACCAATATCATCCGCCAAGGCTGCTGCACGATTTCTGTATGAGA
GCCCGGCGCATCTCCCGCCGCCTGTCCCCCCATCAAACCCTGTTCTAACT
TCCGACACCCCCGACCACGCTCGCTTCCCTCCAGCGGCAGCGGTGGTGGC
ACCTGCAATGGAGGAGGCGCCGGTGGCCAAGGTGGTAACAGTAGCACGGA
TGTCCTCCGAGCGCAGTCCCCTTCCGCGGCCGGCCAAGAAGGCTCCAAGA
CCAGTGGAGGAAACTCTGGAGGTTACCCCATGAGGCACCGGGGCAGCCCT
ACGTTGGCAAGGGGCACTCGCAAAAGCGCCGGCGAGAGAAACGGGGTTGG
TGGGGGTGGGACTGGGGACAGCCGGGGAGGACGCTGGGTAAGGAAAAGAC
CATTTTCTCCATCACGATCGCCATCGCGCAACGGGGTTGCATCGCCCCCG
GTATCGGGTTTGGGCATGATGATAGCCTGAGTTGTGAAAACACCTTCTCC
CTAAGAAAGCCTAAATTTTCAGGGACCAGACAACCCATCCTGTCCTAGTC
TACCAGCTGTACCTTAAGTATATTGGTTTCGCATAGTGTTGCAGTCTTAC
AGATAGTGCTGGTGTTGTGCTTGTATTGCACGCTCGCTATCGCGGTCGAA
GTGAAGTACCTCCCCCCCCCCCTTCCCCCCAAAGCGTGGACGAGCGGAAC
CAAAATGTGGTGTTTGTTCGATTTTACATAGATAATATTTTTCGGCGTTG
TGTATCAAATTTACAGTTCCCTGTGTGAGCGGTTTCTGAGTCTGAGCAAC
GCTTTCACATGTTCGCTTTTCTCAGGACTCGGCCCAGTTTCTGCCCCAAT
TTCGGGTGTTATTATATTTTCGGTTGACCTAGAAACCTTTGATTTTTTTG
GTCAGTGTGCCATTCTCATGTTTGCCTGTGACCTCTGTCTCCCGAGTTGG
TGATGTATTTGAAATTTGGAGATGGATGGTGTTGAAAAGAGATCGGGACG
ATTTTACTGTGAACAGCGACCTAGTGGAAGTGTGCGATTTTATTTTTTTG
TCTTGTACTTGGAGTTTTTGGTACAAGAACAACGGAAGAAAATCGTTTGG
ATATTGAAATATTCGTCATGCGAAGACATTGCTGATATTTTTCACACGAT
GCTTCCTGTACGCGCTCACCCAGCTACCAGTAATGTAGCATCCAAGACGA
GTGTTGTTTTGGTTGCATCTTTGTCGAACCATGTGGTGCAAGTTGTGCCG
AGAGAGCAGGGATGGAGAGGAGTGGAGTGAAGCGGACTGTAGCAGTCGAA
GCGCGATTTGTCCCGAAATTAGTAATTTCATGTGGATGTATGATATTTGT
TGGGGTTGCAGAGAACCGCGAGTATGTAGCGCGAGTGAGGGACGGGGAAG
GATACACAGTGTTCGTGGAAGTGTGTCTGGTCGCGCGGGACGGGAGAGTC
TTGTTAAGCGAGGGTTGTAATATACTCCCGCGTGAAAGTTTAAAATCCCT
CTCATTGATGTGGCCGAGGGGGGAGATTTTCGTATTGTGTACGGTATGTG
TTTCCACCTGGCCCTCGTGTTGTGTCAACGGTGCTATCGATAGCCCAGAT
GGTGTAGTTTTTGTATTGATTTATGTGGGTGTCGTATTTTCGGTTTGACC
CTTGGTGATTTGACAAGTTCACGACTGATCGCAGGAGTCCTGAGATTTTC
AAATTCATCTTTCTTTTCGTGGATGGTCCGTGAGATATGCAATTTTCATC
CTCCATGCGCTGCCATTCACGTAGTCGTCGGTGTCTGTTTTGCACCCGGC
GATGGACACGTTTTATCTCACG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig18:495580..506451+

>mRNA_P-littoralis_Contig18.108.1 ID=mRNA_P-littoralis_Contig18.108.1|Name=mRNA_P-littoralis_Contig18.108.1|organism=Pylaiella littoralis U1_48|type=CDS|length=2553bp|location=Sequence derived from alignment at P-littoralis_Contig18:495580..506451+ (Pylaiella littoralis U1_48)
ATGCACGCTCGGGGCCACGGAGGCATCACGCTACACTACCGAAATAATAG
TGGACCGCGCTCTTCCTCGAGGATGGAAGTGGCGACAGACGCGGGCAGCA
CGATGCCGGAGTACTCGTCTACCAGCAACGAGGGAATGGAATATGACGAG
CAGAATCTCGTCGCGCCAGGGTCGGGGACGGCGGAAGGGTACTCACGCGT
GGGGTCGGGTGCGGATGTGCGGCTCAATCAGCACTATGCTGACCCAGGGA
AGGATGCAGCGCAAGCGCTGTCGGGGGGCCTGGCGGTGTCGATGGCCAAC
GCTAACGGCAGTGGTCACCACCACCACCATAACGGAGTGGCAGGAGTGGG
AGACGCACATCAAAACGCGCGAGGAGTCGGTGGGGGCCGGCAAGACCAGC
CGGATGAACAGAGGGACAATCTAAAGGGTCACGACGAGAAGCAAACCCTG
GTGAGCGGGATGGGCAACCTGTTGAAACGCGCACGACGCGGGGTGAACTC
CTACTTTTCCGCTCTGGCTAGGCAGCAAGTGAAGCACGCGAGACAGCGGA
GGGAGCGCGAGCGCATGATGTCGTCGAACCTCGACTTTCTCGTGGACGCC
GAAGAGGGAGTCAGCCTCCTCACCCAGGTAGCCGATGGGCATGAACAGAC
GACAAATGGCGGAATTCTGCACCGATCCCAGAGTGCGGTGTTCGTGCCTT
CAAGGCTGCCGCAGCAGGCGAACACATCCAGCTCCGTAGCAGTTCTGGAA
ACCAGGAGTGCTGGAATGGCCTCAGATGCGGGAGAGCTGGGGGATGTCAA
CGAGGCAGAAGTGTTTCTGCAGAATGAGCAGCGGGATCACGGGGCAGGGG
GCAGATTGGAAGCCGGAGGGGGTACGATGAAGCGTGGCGGGCGGTCCACG
CTGACGACGGGCGACCTGGTCCGGTTGTATCGGGAAGAGGGCCAGGGGGC
TGGGGAGGACTCAGCGCAGGACGAGGATCGAGAGCGGCAAAGAAAGTCCC
AGGGAAATATTGTAGGCGGCCGTCCCTTCCGGTGGAGCCTGAGGCCTCGC
CGAACAGCGTCGAAAACGTCCTCGATGCCGCGGCTTAATGATCGCGAGAG
CAACGTACAGCAATGGAAGAGGGATCAAGACCAGTGGGCCCACCTCGGCT
TTAAGGTGCTCGGTGTGGAGATTGGACACCTGCCTGCGCACCAGCAGGTA
GCTCTGCTCGCTGGAGGCGTCTTCTTCTTTCTCCTCATCTATGGTTACAT
GCAGGAGTACCTTGTCGTGAAAATCTTCGAGCGCGAATACGGTCTTTTCA
TGACCTTCCTTCAGTTCTTCGGTTACGCGGCGTGCGCGGCGTTGCGGAGG
GGAATTCACCGTGAGACCGGCCGAAAAATTCCCATGCGCACGTACTGCGG
GTTGGGATTCCTGCAGGCTGTGATGCAGGGTCTGACGAACGTGTCGATGA
TGTACCTCAACTACCCGGCGAAGGTGCTCTTCAAATCGTCCAGAATGGTT
CCCATCATGTGTTTCGGGGTGGTGTGGCAGGGCCGGAGGTACTCGATGAG
AGACTGCGGCGTGGTTTGTTTCATAGTTGTAGGTCTTGCCACGTTCATGA
ATGCGGAGACTCGTTCCTCGGTGAACTCAGAAACGCCTAGCAGCCTGCTG
GGGGTGGCGTGCATTTCCCTTGCGTTGGTGATCGACGCGGCCAACATCAA
TATCCAGGAGGAGGTGATGAATAGGTACGCCAGCTGTCAGGACGAGCTCA
TCATGTTCTCTTACCTCTGCGGCACCATGTTCGTGGCGTCCTTCTGCGTG
TTCTCGGGCGAGCTGGTCTCTGGCTTCGTTTTCTTGCACGGAAAGGGCAT
GTGGGCGATTAGCGCGGTGATGTTGTACTGCGCGGCTGGGTTTTTGGGAG
GGAGCTGCGCGGTGGCGTTGACGAAGAGGTTCGGCGCACTGCACTCTGCC
ATCACGACGACGGCGCGAAAGGCCGTGACCCTCATGCTGAGCTTCGTCTA
TTTCCGAAAGGCCTTCACCGCACAGCACCTCGTTGGCGCCACGGTGTTTA
TGGTCGGCCTCATGACCAAGGTGCTGGGAAAAGAGGGCAAGTCATCCTCA
CCGGCGGGGCAGTCGGCCAACAACTCACCCGCTGTGACGCCCATGATAAA
TTCGCAACACCGAAAATACTTGGGCGGCAGAGAAGAGTCCGTTCAGTTGA
ACTCCAGCGGCAGCGGTGGTGGCACCTGCAATGGAGGAGGCGCCGGTGGC
CAAGGTGGTAACAGTAGCACGGATGTCCTCCGAGCGCAGTCCCCTTCCGC
GGCCGGCCAAGAAGGCTCCAAGACCAGTGGAGGAAACTCTGGAGGTTACC
CCATGAGGCACCGGGGCAGCCCTACGTTGGCAAGGGGCACTCGCAAAAGC
GCCGGCGAGAGAAACGGGGTTGGTGGGGGTGGGACTGGGGACAGCCGGGG
AGGACGCTGGGTAAGGAAAAGACCATTTTCTCCATCACGATCGCCATCGC
GCAACGGGGTTGCATCGCCCCCGGTATCGGGTTTGGGCATGATGATAGCC
TGA
back to top