prot_P-littoralis_Contig18.105.1 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig18.105.1
Unique Nameprot_P-littoralis_Contig18.105.1
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length76
Homology
BLAST of mRNA_P-littoralis_Contig18.105.1 vs. uniprot
Match: D8LRR0_ECTSI (Small nuclear ribonucleoprotein G n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRR0_ECTSI)

HSP 1 Score: 153 bits (387), Expect = 2.380e-47
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0
Query:    1 MAKGGPDLKRYMDKTLSLKLNGNRTVKGVLRGYDPFMNLVLDETTDPASSDKKMGMVIIRGNSVVQFEILDPLRF 75
            MAKGGPDLKRYMDKTLSLKLNGNRTVKGVLRGYDPFMNLVLDETTDPASSDKKMGMVIIRGNSVVQFEILDPLRF
Sbjct:    1 MAKGGPDLKRYMDKTLSLKLNGNRTVKGVLRGYDPFMNLVLDETTDPASSDKKMGMVIIRGNSVVQFEILDPLRF 75          
BLAST of mRNA_P-littoralis_Contig18.105.1 vs. uniprot
Match: A0A835YWI2_9STRA (Small nuclear ribonucleoprotein G n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWI2_9STRA)

HSP 1 Score: 105 bits (262), Expect = 3.070e-28
Identity = 49/73 (67.12%), Postives = 64/73 (87.67%), Query Frame = 0
Query:    4 GGPDLKRYMDKTLSLKLNGNRTVKGVLRGYDPFMNLVLDETTD-PASSDKKM-GMVIIRGNSVVQFEILDPLR 74
            GGPDLKRYMDK L LKLNGNR V+GVLRGYD FMN+VLDE  + P+ +++++ GMV+IRGNSV++FE+LDP++
Sbjct:    5 GGPDLKRYMDKRLHLKLNGNREVRGVLRGYDQFMNIVLDEAVEVPSKAEERLIGMVVIRGNSVIRFEVLDPVQ 77          
BLAST of mRNA_P-littoralis_Contig18.105.1 vs. uniprot
Match: A0A4D9CNZ1_9STRA (Small nuclear ribonucleoprotein G n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CNZ1_9STRA)

HSP 1 Score: 100 bits (250), Expect = 1.910e-26
Identity = 48/71 (67.61%), Postives = 58/71 (81.69%), Query Frame = 0
Query:    4 GGPDLKRYMDKTLSLKLNGNRTVKGVLRGYDPFMNLVLDETTDPASSDKK-MGMVIIRGNSVVQFEILDPL 73
            GGPDLK+Y+DK L+ KLNGNR V GVLRG+D FMN+VLDET D  + DK  +G+V+IRGNSVVQFE L+ L
Sbjct:    5 GGPDLKKYLDKKLAFKLNGNRKVTGVLRGFDQFMNIVLDETVDDGAPDKNDIGLVVIRGNSVVQFECLEKL 75          
BLAST of mRNA_P-littoralis_Contig18.105.1 vs. uniprot
Match: W4GJ25_9STRA (Small nuclear ribonucleoprotein G n=5 Tax=Aphanomyces TaxID=100860 RepID=W4GJ25_9STRA)

HSP 1 Score: 100 bits (249), Expect = 2.780e-26
Identity = 47/71 (66.20%), Postives = 58/71 (81.69%), Query Frame = 0
Query:    5 GPDLKRYMDKTLSLKLNGNRTVKGVLRGYDPFMNLVLDETTDPASSDK--KMGMVIIRGNSVVQFEILDPL 73
            GPDLKRYMDKTLS+KLNGNR V G+LRG+D FMN+ LD+T +  S  +  K+GMV+IRGNS+VQFE LD +
Sbjct:    6 GPDLKRYMDKTLSIKLNGNRKVSGILRGFDQFMNITLDDTIEEVSQTEANKIGMVVIRGNSIVQFECLDRI 76          
BLAST of mRNA_P-littoralis_Contig18.105.1 vs. uniprot
Match: A0A024GIK4_9STRA (Small nuclear ribonucleoprotein G n=3 Tax=Oomycota TaxID=4762 RepID=A0A024GIK4_9STRA)

HSP 1 Score: 100 bits (248), Expect = 3.960e-26
Identity = 49/71 (69.01%), Postives = 57/71 (80.28%), Query Frame = 0
Query:    5 GPDLKRYMDKTLSLKLNGNRTVKGVLRGYDPFMNLVLDETTDPASS--DKKMGMVIIRGNSVVQFEILDPL 73
            GPDLKRYMDK LSLKLNGNR V GVLRGYD FMN+ LDE  +  S+  + K+GMV+IRGNS+VQFE L+ L
Sbjct:    6 GPDLKRYMDKRLSLKLNGNRKVSGVLRGYDQFMNVTLDEAIEEVSTTENNKIGMVVIRGNSIVQFECLEKL 76          
BLAST of mRNA_P-littoralis_Contig18.105.1 vs. uniprot
Match: H3G549_PHYRM (Small nuclear ribonucleoprotein G n=25 Tax=Oomycota TaxID=4762 RepID=H3G549_PHYRM)

HSP 1 Score: 98.2 bits (243), Expect = 2.290e-25
Identity = 47/71 (66.20%), Postives = 58/71 (81.69%), Query Frame = 0
Query:    5 GPDLKRYMDKTLSLKLNGNRTVKGVLRGYDPFMNLVLDETTDPASSDK--KMGMVIIRGNSVVQFEILDPL 73
            GPDLKRYMDK LSLKLNGNR V GVLRG+D FMN+ LDET +  S+ +  ++GMV+IRGNS+VQFE L+ +
Sbjct:    6 GPDLKRYMDKRLSLKLNGNRKVSGVLRGFDQFMNVTLDETVEEVSATESNRIGMVVIRGNSIVQFECLERI 76          
BLAST of mRNA_P-littoralis_Contig18.105.1 vs. uniprot
Match: A0A484EFX9_BRELC (Small nuclear ribonucleoprotein G n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EFX9_BRELC)

HSP 1 Score: 97.8 bits (242), Expect = 6.540e-25
Identity = 47/71 (66.20%), Postives = 58/71 (81.69%), Query Frame = 0
Query:    5 GPDLKRYMDKTLSLKLNGNRTVKGVLRGYDPFMNLVLDETTDPASSDK--KMGMVIIRGNSVVQFEILDPL 73
            GPDLKRYMDK LSLKLNGNR V GVLRG+D FMN+ LDET +  S+ +  ++GMV+IRGNS+VQFE L+ +
Sbjct:   31 GPDLKRYMDKRLSLKLNGNRKVSGVLRGFDQFMNVTLDETIEEVSTTESNRIGMVVIRGNSIVQFECLERI 101          
BLAST of mRNA_P-littoralis_Contig18.105.1 vs. uniprot
Match: A0A6P8J6H9_ACTTE (Small nuclear ribonucleoprotein G n=2 Tax=Actiniaria TaxID=6103 RepID=A0A6P8J6H9_ACTTE)

HSP 1 Score: 94.7 bits (234), Expect = 5.390e-24
Identity = 47/70 (67.14%), Postives = 56/70 (80.00%), Query Frame = 0
Query:    6 PDLKRYMDKTLSLKLNGNRTVKGVLRGYDPFMNLVLDETTDPASSDKK--MGMVIIRGNSVVQFEILDPL 73
            P+LK+YMDK LSLKLNG R V GVLRGYDPFMNLVLDE  + AS+ +K  +GMV+IRGNS+V  E LD +
Sbjct:    7 PELKKYMDKKLSLKLNGGRHVTGVLRGYDPFMNLVLDEAVEDASATEKHSIGMVVIRGNSIVTMESLDRI 76          
BLAST of mRNA_P-littoralis_Contig18.105.1 vs. uniprot
Match: A0A0M0JX40_9EUKA (Small nuclear ribonucleoprotein G n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JX40_9EUKA)

HSP 1 Score: 94.7 bits (234), Expect = 5.690e-24
Identity = 44/71 (61.97%), Postives = 57/71 (80.28%), Query Frame = 0
Query:    5 GPDLKRYMDKTLSLKLNGNRTVKGVLRGYDPFMNLVLDETTDPASSDKK--MGMVIIRGNSVVQFEILDPL 73
            GPDLK+YMDK L++KLNGNRT+ G LRG+D FMNLVLDET +  S+ ++  +GMV+IRGNS+V  E L+ L
Sbjct:    6 GPDLKKYMDKRLAIKLNGNRTINGTLRGFDQFMNLVLDETVEQVSATEQNSIGMVVIRGNSIVMIEALEKL 76          
BLAST of mRNA_P-littoralis_Contig18.105.1 vs. uniprot
Match: A0A7S4I7A1_9EUKA (Small nuclear ribonucleoprotein G n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4I7A1_9EUKA)

HSP 1 Score: 95.5 bits (236), Expect = 6.330e-24
Identity = 46/74 (62.16%), Postives = 59/74 (79.73%), Query Frame = 0
Query:    2 AKGGPDLKRYMDKTLSLKLNGNRTVKGVLRGYDPFMNLVLDETTDPASSDKK--MGMVIIRGNSVVQFEILDPL 73
            A+ GPDLK+YMDK L++KLNGNR V G+LRG+D FMNLVLDET +  S+ +K  +GMV+IRGNS+V  E L+ L
Sbjct:   21 AQVGPDLKKYMDKKLAIKLNGNRNVIGILRGFDQFMNLVLDETVEQVSASEKNNIGMVVIRGNSIVMMEALEKL 94          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig18.105.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRR0_ECTSI2.380e-47100.00Small nuclear ribonucleoprotein G n=1 Tax=Ectocarp... [more]
A0A835YWI2_9STRA3.070e-2867.12Small nuclear ribonucleoprotein G n=1 Tax=Tribonem... [more]
A0A4D9CNZ1_9STRA1.910e-2667.61Small nuclear ribonucleoprotein G n=1 Tax=Nannochl... [more]
W4GJ25_9STRA2.780e-2666.20Small nuclear ribonucleoprotein G n=5 Tax=Aphanomy... [more]
A0A024GIK4_9STRA3.960e-2669.01Small nuclear ribonucleoprotein G n=3 Tax=Oomycota... [more]
H3G549_PHYRM2.290e-2566.20Small nuclear ribonucleoprotein G n=25 Tax=Oomycot... [more]
A0A484EFX9_BRELC6.540e-2566.20Small nuclear ribonucleoprotein G n=1 Tax=Bremia l... [more]
A0A6P8J6H9_ACTTE5.390e-2467.14Small nuclear ribonucleoprotein G n=2 Tax=Actiniar... [more]
A0A0M0JX40_9EUKA5.690e-2461.97Small nuclear ribonucleoprotein G n=1 Tax=Chrysoch... [more]
A0A7S4I7A1_9EUKA6.330e-2462.16Small nuclear ribonucleoprotein G n=1 Tax=Prymnesi... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 6..69
e-value: 9.6E-19
score: 78.3
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 7..67
e-value: 4.8E-19
score: 67.8
NoneNo IPR availableGENE3D2.30.30.100coord: 5..69
e-value: 3.7E-21
score: 76.4
NoneNo IPR availablePANTHERPTHR10553:SF2SMALL NUCLEAR RIBONUCLEOPROTEIN Gcoord: 5..73
IPR044641Sm-like protein Lsm7/SmGPANTHERPTHR10553SMALL NUCLEAR RIBONUCLEOPROTEINcoord: 5..73
IPR034098Small nuclear ribonucleoprotein GCDDcd01719Sm_Gcoord: 4..71
e-value: 1.78556E-36
score: 115.307
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 7..73

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig18contigP-littoralis_Contig18:489117..492427 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig18.105.1mRNA_P-littoralis_Contig18.105.1Pylaiella littoralis U1_48mRNAP-littoralis_Contig18 488694..493391 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig18.105.1 ID=prot_P-littoralis_Contig18.105.1|Name=mRNA_P-littoralis_Contig18.105.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=76bp
MAKGGPDLKRYMDKTLSLKLNGNRTVKGVLRGYDPFMNLVLDETTDPASS
DKKMGMVIIRGNSVVQFEILDPLRF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR044641Lsm7/SmG-like
IPR034098Sm_G
IPR010920LSM_dom_sf