mRNA_P-littoralis_Contig18.105.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig18.105.1
Unique NamemRNA_P-littoralis_Contig18.105.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig18.105.1 vs. uniprot
Match: D8LRR0_ECTSI (Small nuclear ribonucleoprotein G n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRR0_ECTSI)

HSP 1 Score: 152 bits (385), Expect = 3.930e-42
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 2 
Query:  137 MAKGGPDLKRYMDKTLSLKLNGNRTVKGVLRGYDPFMNLVLDETTDPASSDKKMGMVIIRGNSVVQFEILDPLRF 361
            MAKGGPDLKRYMDKTLSLKLNGNRTVKGVLRGYDPFMNLVLDETTDPASSDKKMGMVIIRGNSVVQFEILDPLRF
Sbjct:    1 MAKGGPDLKRYMDKTLSLKLNGNRTVKGVLRGYDPFMNLVLDETTDPASSDKKMGMVIIRGNSVVQFEILDPLRF 75
[Close]
BLAST of mRNA_P-littoralis_Contig18.105.1 vs. uniprot
Match: A0A835YWI2_9STRA (Small nuclear ribonucleoprotein G n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWI2_9STRA)

HSP 1 Score: 104 bits (260), Expect = 5.250e-24
Identity = 49/73 (67.12%), Postives = 64/73 (87.67%), Query Frame = 2 
Query:  146 GGPDLKRYMDKTLSLKLNGNRTVKGVLRGYDPFMNLVLDETTD-PASSDKKM-GMVIIRGNSVVQFEILDPLR 358
            GGPDLKRYMDK L LKLNGNR V+GVLRGYD FMN+VLDE  + P+ +++++ GMV+IRGNSV++FE+LDP++
Sbjct:    5 GGPDLKRYMDKRLHLKLNGNREVRGVLRGYDQFMNIVLDEAVEVPSKAEERLIGMVVIRGNSVIRFEVLDPVQ 77
[Close]
BLAST of mRNA_P-littoralis_Contig18.105.1 vs. uniprot
Match: A0A4D9CNZ1_9STRA (Small nuclear ribonucleoprotein G n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CNZ1_9STRA)

HSP 1 Score: 100 bits (249), Expect = 1.730e-22
Identity = 48/71 (67.61%), Postives = 58/71 (81.69%), Query Frame = 2 
Query:  146 GGPDLKRYMDKTLSLKLNGNRTVKGVLRGYDPFMNLVLDETTDPASSDKK-MGMVIIRGNSVVQFEILDPL 355
            GGPDLK+Y+DK L+ KLNGNR V GVLRG+D FMN+VLDET D  + DK  +G+V+IRGNSVVQFE L+ L
Sbjct:    5 GGPDLKKYLDKKLAFKLNGNRKVTGVLRGFDQFMNIVLDETVDDGAPDKNDIGLVVIRGNSVVQFECLEKL 75
[Close]
BLAST of mRNA_P-littoralis_Contig18.105.1 vs. uniprot
Match: W4GJ25_9STRA (Small nuclear ribonucleoprotein G n=5 Tax=Aphanomyces TaxID=100860 RepID=W4GJ25_9STRA)

HSP 1 Score: 100 bits (248), Expect = 2.450e-22
Identity = 47/71 (66.20%), Postives = 58/71 (81.69%), Query Frame = 2 
Query:  149 GPDLKRYMDKTLSLKLNGNRTVKGVLRGYDPFMNLVLDETTDPASSDK--KMGMVIIRGNSVVQFEILDPL 355
            GPDLKRYMDKTLS+KLNGNR V G+LRG+D FMN+ LD+T +  S  +  K+GMV+IRGNS+VQFE LD +
Sbjct:    6 GPDLKRYMDKTLSIKLNGNRKVSGILRGFDQFMNITLDDTIEEVSQTEANKIGMVVIRGNSIVQFECLDRI 76
[Close]
BLAST of mRNA_P-littoralis_Contig18.105.1 vs. uniprot
Match: A0A024GIK4_9STRA (Small nuclear ribonucleoprotein G n=3 Tax=Oomycota TaxID=4762 RepID=A0A024GIK4_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 3.390e-22
Identity = 49/71 (69.01%), Postives = 57/71 (80.28%), Query Frame = 2 
Query:  149 GPDLKRYMDKTLSLKLNGNRTVKGVLRGYDPFMNLVLDETTDPASS--DKKMGMVIIRGNSVVQFEILDPL 355
            GPDLKRYMDK LSLKLNGNR V GVLRGYD FMN+ LDE  +  S+  + K+GMV+IRGNS+VQFE L+ L
Sbjct:    6 GPDLKRYMDKRLSLKLNGNRKVSGVLRGYDQFMNVTLDEAIEEVSTTENNKIGMVVIRGNSIVQFECLEKL 76
[Close]
BLAST of mRNA_P-littoralis_Contig18.105.1 vs. uniprot
Match: H3G549_PHYRM (Small nuclear ribonucleoprotein G n=25 Tax=Oomycota TaxID=4762 RepID=H3G549_PHYRM)

HSP 1 Score: 97.8 bits (242), Expect = 1.710e-21
Identity = 47/71 (66.20%), Postives = 58/71 (81.69%), Query Frame = 2 
Query:  149 GPDLKRYMDKTLSLKLNGNRTVKGVLRGYDPFMNLVLDETTDPASSDK--KMGMVIIRGNSVVQFEILDPL 355
            GPDLKRYMDK LSLKLNGNR V GVLRG+D FMN+ LDET +  S+ +  ++GMV+IRGNS+VQFE L+ +
Sbjct:    6 GPDLKRYMDKRLSLKLNGNRKVSGVLRGFDQFMNVTLDETVEEVSATESNRIGMVVIRGNSIVQFECLERI 76
[Close]
BLAST of mRNA_P-littoralis_Contig18.105.1 vs. uniprot
Match: A0A484EFX9_BRELC (Small nuclear ribonucleoprotein G n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EFX9_BRELC)

HSP 1 Score: 97.4 bits (241), Expect = 4.780e-21
Identity = 47/71 (66.20%), Postives = 58/71 (81.69%), Query Frame = 2 
Query:  149 GPDLKRYMDKTLSLKLNGNRTVKGVLRGYDPFMNLVLDETTDPASSDK--KMGMVIIRGNSVVQFEILDPL 355
            GPDLKRYMDK LSLKLNGNR V GVLRG+D FMN+ LDET +  S+ +  ++GMV+IRGNS+VQFE L+ +
Sbjct:   31 GPDLKRYMDKRLSLKLNGNRKVSGVLRGFDQFMNVTLDETIEEVSTTESNRIGMVVIRGNSIVQFECLERI 101
[Close]
BLAST of mRNA_P-littoralis_Contig18.105.1 vs. uniprot
Match: A0A6P8J6H9_ACTTE (Small nuclear ribonucleoprotein G n=2 Tax=Actiniaria TaxID=6103 RepID=A0A6P8J6H9_ACTTE)

HSP 1 Score: 94.4 bits (233), Expect = 3.120e-20
Identity = 47/70 (67.14%), Postives = 56/70 (80.00%), Query Frame = 2 
Query:  152 PDLKRYMDKTLSLKLNGNRTVKGVLRGYDPFMNLVLDETTDPASSDKK--MGMVIIRGNSVVQFEILDPL 355
            P+LK+YMDK LSLKLNG R V GVLRGYDPFMNLVLDE  + AS+ +K  +GMV+IRGNS+V  E LD +
Sbjct:    7 PELKKYMDKKLSLKLNGGRHVTGVLRGYDPFMNLVLDEAVEDASATEKHSIGMVVIRGNSIVTMESLDRI 76
[Close]
BLAST of mRNA_P-littoralis_Contig18.105.1 vs. uniprot
Match: A0A0M0JX40_9EUKA (Small nuclear ribonucleoprotein G n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JX40_9EUKA)

HSP 1 Score: 94.4 bits (233), Expect = 3.290e-20
Identity = 44/71 (61.97%), Postives = 57/71 (80.28%), Query Frame = 2 
Query:  149 GPDLKRYMDKTLSLKLNGNRTVKGVLRGYDPFMNLVLDETTDPASSDKK--MGMVIIRGNSVVQFEILDPL 355
            GPDLK+YMDK L++KLNGNRT+ G LRG+D FMNLVLDET +  S+ ++  +GMV+IRGNS+V  E L+ L
Sbjct:    6 GPDLKKYMDKRLAIKLNGNRTINGTLRGFDQFMNLVLDETVEQVSATEQNSIGMVVIRGNSIVMIEALEKL 76
[Close]
BLAST of mRNA_P-littoralis_Contig18.105.1 vs. uniprot
Match: A0A7S4I7A1_9EUKA (Small nuclear ribonucleoprotein G n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4I7A1_9EUKA)

HSP 1 Score: 95.1 bits (235), Expect = 3.910e-20
Identity = 46/74 (62.16%), Postives = 59/74 (79.73%), Query Frame = 2 
Query:  140 AKGGPDLKRYMDKTLSLKLNGNRTVKGVLRGYDPFMNLVLDETTDPASSDKK--MGMVIIRGNSVVQFEILDPL 355
            A+ GPDLK+YMDK L++KLNGNR V G+LRG+D FMNLVLDET +  S+ +K  +GMV+IRGNS+V  E L+ L
Sbjct:   21 AQVGPDLKKYMDKKLAIKLNGNRNVIGILRGFDQFMNLVLDETVEQVSASEKNNIGMVVIRGNSIVMMEALEKL 94
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig18.105.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRR0_ECTSI3.930e-42100.00Small nuclear ribonucleoprotein G n=1 Tax=Ectocarp... [more]
A0A835YWI2_9STRA5.250e-2467.12Small nuclear ribonucleoprotein G n=1 Tax=Tribonem... [more]
A0A4D9CNZ1_9STRA1.730e-2267.61Small nuclear ribonucleoprotein G n=1 Tax=Nannochl... [more]
W4GJ25_9STRA2.450e-2266.20Small nuclear ribonucleoprotein G n=5 Tax=Aphanomy... [more]
A0A024GIK4_9STRA3.390e-2269.01Small nuclear ribonucleoprotein G n=3 Tax=Oomycota... [more]
H3G549_PHYRM1.710e-2166.20Small nuclear ribonucleoprotein G n=25 Tax=Oomycot... [more]
A0A484EFX9_BRELC4.780e-2166.20Small nuclear ribonucleoprotein G n=1 Tax=Bremia l... [more]
A0A6P8J6H9_ACTTE3.120e-2067.14Small nuclear ribonucleoprotein G n=2 Tax=Actiniar... [more]
A0A0M0JX40_9EUKA3.290e-2061.97Small nuclear ribonucleoprotein G n=1 Tax=Chrysoch... [more]
A0A7S4I7A1_9EUKA3.910e-2062.16Small nuclear ribonucleoprotein G n=1 Tax=Prymnesi... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig18contigP-littoralis_Contig18:488694..493391 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LRR0
Preferred nameSNRPG
PFAMsLSM
Model size1328
Max annot lvl2759|Eukaryota
KEGG koko:K11099
KEGG Pathwayko03040,map03040
KEGG ModuleM00351,M00352,M00354,M00355,M00398
Hectar predicted targeting categoryother localisation
GOsGO:0000245,GO:0000375,GO:0000377,GO:0000387,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005682,GO:0005683,GO:0005684,GO:0005685,GO:0005686,GO:0005687,GO:0005689,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006353,GO:0006366,GO:0006369,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006810,GO:0006913,GO:0008150,GO:0008152,GO:0008334,GO:0008380,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016071,GO:0018130,GO:0019438,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034708,GO:0034709,GO:0034719,GO:0035770,GO:0036464,GO:0043021,GO:0043170,GO:0043186,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0045495,GO:0046483,GO:0046907,GO:0051169,GO:0051170,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0060293,GO:0065003,GO:0070013,GO:0070990,GO:0071004,GO:0071010,GO:0071011,GO:0071013,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:0097525,GO:0097526,GO:0097659,GO:0120114,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902494,GO:1990234,GO:1990446,GO:1990904
Exons3
Evalue3.91e-48
EggNOG OGsKOG1780@1|root,KOG1780@2759|Eukaryota
Ec32 ortholog descriptionsmall nuclear ribonucleoprotein polypeptide G
Ec32 orthologEc-08_002090.1
Descriptionspliceosomal snRNP assembly
Cds size228
COG categoryJ
BRITEko00000,ko00001,ko00002,ko03032,ko03041
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789864.5770714-UTR-P-littoralis_Contig18:488693..4887731680789864.5770714-UTR-P-littoralis_Contig18:488693..488773Pylaiella littoralis U1_48UTRP-littoralis_Contig18 488694..488773 +
1680789864.5884824-UTR-P-littoralis_Contig18:489060..4891161680789864.5884824-UTR-P-littoralis_Contig18:489060..489116Pylaiella littoralis U1_48UTRP-littoralis_Contig18 489061..489116 +
1680789864.6199903-UTR-P-littoralis_Contig18:492427..4933911680789864.6199903-UTR-P-littoralis_Contig18:492427..493391Pylaiella littoralis U1_48UTRP-littoralis_Contig18 492428..493391 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789864.6028814-CDS-P-littoralis_Contig18:489116..4891971680789864.6028814-CDS-P-littoralis_Contig18:489116..489197Pylaiella littoralis U1_48CDSP-littoralis_Contig18 489117..489197 +
1680789864.611588-CDS-P-littoralis_Contig18:492280..4924271680789864.611588-CDS-P-littoralis_Contig18:492280..492427Pylaiella littoralis U1_48CDSP-littoralis_Contig18 492281..492427 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig18.105.1prot_P-littoralis_Contig18.105.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig18 489117..492427 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig18.105.1

>prot_P-littoralis_Contig18.105.1 ID=prot_P-littoralis_Contig18.105.1|Name=mRNA_P-littoralis_Contig18.105.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=76bp
MAKGGPDLKRYMDKTLSLKLNGNRTVKGVLRGYDPFMNLVLDETTDPASS
DKKMGMVIIRGNSVVQFEILDPLRF*
back to top

mRNA from alignment at P-littoralis_Contig18:488694..493391+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig18.105.1 ID=mRNA_P-littoralis_Contig18.105.1|Name=mRNA_P-littoralis_Contig18.105.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4698bp|location=Sequence derived from alignment at P-littoralis_Contig18:488694..493391+ (Pylaiella littoralis U1_48)
TGGAGTACTACACGTGCTCCACCACCGGCACTGGCTTGACCCAGAGTGTA
CGAGAGAACGGCGCAGACTCCAGTATTAAGGTGCGTAACAAGACGTAGAA
AGTTTGGCAAAGATGCATAGGTCGAGGGTGGAGTAATGCAGAGACTTGCT
TGATGGAGACTACCTCAGTTCGTCTTCCGGTTACGAGATTCGCGACGGTC
CATACGGCCACTTTCTGCTGTTTTGCTGTGCTTCTGAGACCGGTGTACGC
ACCCACTTTGTACAGTACAGACAGTAGAGACACACACACTGTTTGCTATT
TGCACTCGGCGTTTCGTGGTACACCCAAGGTGCCGATATGTCTTTGTTCG
TTTCTTTGCGAAAACAGGTTACCCACAAGTTGCCCTCCACAAGGTGCTCT
TGTTTTTGAGGTATTATAAAAAGATGGCGAAAGGAGGGCCGGACTTGAAA
CGCTACATGGACAAGACGCTGTCTCTCAAGCTCAACGGAAACCGAACTGT
CAAGGTGCGGCCGCTACATTTGCACAGGATTGCTTGACAAGGGCGGCAAT
ATTTTTAAACCACACCTACGATAATAATGGCCTTAACCCAGCGTAGAAGT
CGCGATCGGCGAGGCGAAGGACATCAGGAGGCGGCGACATTTATCTTGGC
TCAGATCTCCTCCTGGGGAAAAGATGTCGAGGGCCCCAGTGTCTCAAAAG
ACTCCTCAATCTTTACCGAAACCGAACCTTTCAATCGGCTGAACTCGCCT
CCATATGCACCAATCTTCTAAAGTGCGGTTCATCCGAGGCAGGCAGTGTC
GTGAGCTACTGCTGTAGACCCACAGTTCAAAATTTTGGGTCTATGGTGGC
GATCACCGCAGTGGAAGACTTCGGCGTCGATCCAGTTTGCAAACTTTTAA
GGCCACTGTTGCGGCCTTCCGTATCTCAGCCCCAGCAGTAGATATGAGCT
TGTAAATACACATGTCGCTGCTGCAGAGTATCCTCTGCTGAAATAGCCTC
TCAGATGGGGACTCCTTGCACGACAGACCATATTGAAGCCTTATCCAAAT
ACGCTGGTTCGACTTGATGTTGGACTCATGTCGAAAATTATCCTGATCTC
AGAGGTGGAGGTTGGTTAATTGCATGATACGCATATGAAGGGAAAAGCCC
CGGCCGCCGCTGTGTACGATGCCCGACGGTTTTTTCCTTGCCCAACACCT
TCCTCCTAGTGTGAGGTACCCAGTGTGTGATTGTCGGGTGCTCTTTCTCT
ATTTTCCAAAATCAGTCGATCCAAATATCGGCTGCCAGGCCACCCTTAAC
ACCGTGCATGGTGTGGATAAAGAAATTTACACCTCGCCGTAATATTAAAA
GATGCTGGGGTTTGTAGAGATGTTATGTCGTTGTGATCTGCGGTAGGTCG
GTCGATCGATCAGTCGGTCTGTCGGCCGTTGGGGCGGGGGTGGGATGTTG
TTGTGCCGGGTCATGTGAACACTAAACCTCAAGTCTTCACAATTGTCACC
CAGCCATCAAGAGGATGCTGGGGGGCTGCAAAATGGATGGGTTTTACGCC
ATTCGTCATACTTTTTTGTAGTGCCGTTTATCTTACACGAAGATCTATCG
TACGGTCCGTGCACAACAATTTGTCCAATAACGTTTCGTGCAATAAATTT
TTCCCGAAAAACAATTGAAACGGGAAACAACTATAGTCGTGACCGCCTTG
TCGAGATACGTCGATAGCTGCAGAGTTTTTTTTTTTGGCGATATGCAACA
TTTTCGACAAAAATCATAAACGGAGCCCCCATATACCCCTATTCATCCAC
GGAACTCCCAAACCGTGCCCCCGAGACCCCAAACGGTACCTACTATGTAC
ATTACATACCATGGTCACCACGTGTTTGCATTTGTACAGGAATATACCAC
GAAGCACCTCATCGACAACACCCTCAAACGTCAAACGCACTACCACTTCT
ACTCTACGATTCTCCATACACGTAAATATTGAGGAGTAAGTGTACTGTAT
ACACGTCTGCTGCCGCCGTCCCTTCCTCCTCGTCCACGTCCATCAAAAAC
GCGCTGTCATGGCCACCCGAGAGCGTAACTCCAGCTCCTGGTGATGGAAC
ATCATGTTGCTGCGTCGGCTTCGGTTTCTTCGAAACCGCTCGACCATCGG
CTCCGCGCGGGCCGAACGTCTTCTTCTTGGACCGTCCCTGACGCTTCCCC
ATGGTGCTTGCGTGCGTCTTTGATGTTTTCGGGCCGCCACGTGTGCCTGT
TGTTGTGTGTTCGTGCTGCCCAACGAAAAAAAATCTCCCATGGGGACGGC
ACAACAAAAAGTTGAATATCTCGGAACCAGATTTTTCCCGACAAAACCCA
CAAATATCGACCTAGATATTGAGGGGAGGAATCGTTTGCCGCTGTTTATT
TTGAAATCGGTCGGTTAGTTATGCGCTGAAAAACAATTCGAATTGGCCCT
CTAGATCCGGTTTTTCTGTGATATCTCCGTCAATTTGTAATATTTTTACA
AAAACAAAATACCGACCTGGCAAATTCCGAGATCTATTCAAATCCGTTGA
GTTTTTTCGAATCGGCAAAGAACACACCCCTGCGAAAACATTTCAAGTTT
TTCCGGTTTTGCGCCGATAAAAAGTCAAGGAAAAAAACAAAAAAAGCTCT
CCGTCACGCGATGCGCCTGCAAACAGGGCGTTTTCCGGTACTTTCAGATT
TCGGAACCACCACCTGAGTGCAGAGAAAAGTTGTCATTTGTGCTGGGACT
AATTCGGATTTTTTGGTGTGCACGGACACAGCCCATGGTCACAAACCTGG
CACAAAAACCCCAAACGCAAGAGGGATGACAACCTTGACCAATGCGTGTG
GATTCACATGCCCAAACATTGCGGACAATGACAACCGCAGTTTGTTGCGA
AATCAACCAAGGCCTCTACCACAACCCCATCATAGGATGTACTCCAAACC
GCCAAAAAACGTTTTGCCGCCTTGAAGCCATGGATGCGCTTGGTTTCGCT
GCAACCCAACCTCGATACCTACCAGCACTAGGTGTTGAGAGTAAAGCTGT
ACTTCAAAAGTGCTGGAATATTTGCCATTCCAGCAAAATGCGACATCGAC
TAACGGTCAAGCAATGGGCAGACGCGAGTGTACGCCTATGACGTAAGAAA
ATATGCGGCCCATGGATATGAACACGCGAACGTGCTTCTGCAGGAGTACT
GAGCACCGAAAGCCAGTATTTCAGCAATACCCGTTGGGGTCACGAACAAA
GCAGGCTCCAAATCCGGTCGGTGCAATTGATACGAATATGCACCTTGCCT
GTAGTCTAAGGGAGTCGGGACACTACGGGAGTGCGAGATCGGCACACAGA
GTAGGCGTGGCATGCCTGCAGGTCCACCTTGCAGAAACGGGCGATGTATT
TTTAAGACTCTATTAGAAAAATAGGCGAGACTCCCTACGGGAAGTATGAT
ACGGGCGTGCAGGTATGAGGTGCTCGCCCTTGAGCTTTGACTTATGTATG
TTTGATATACGCTAATGTGAGGAATAACATAAGACATTTTCCTTGACCGC
TCGTTGCTTTGCTGGAATCGATCCCCCGCCCTCCTAGGGTGTCTTGCGAG
GTTACGACCCGTTCATGAACCTGGTGTTGGACGAGACGACAGATCCTGCC
TCCTCTGACAAGAAGATGGGAATGGTCATCATCAGAGGAAACAGCGTTGT
GCAGTTCGAAATCCTCGACCCTCTCCGCTTTTAAGAAGCGTCGTGTCTTC
GTAAAAATATGTAGAGATAAATGAATAATTTGTAGATGGTGAGTGTAGCA
AAAGTAGGAGTTGATTTCACCGGGACCCACGGAATTAGCAGCAACGAGGT
CGAGGCGTTCATGTGGTATTCGTCTCAAGACCTGACTTGGCCACTTCAGG
GTGGTGGCAAGGAGAAAAAATGTTGCGCTCAAATGTGCCTCTCTGTTTTT
TGTGGTTTCTTTGTCTGCTTTGACGAAAAGTGACTGATGTCGGCGATCTG
ACGCCTTCCAATTGACCCAGTGCCGCGAAATTGTCGTGCTGATACTCTTT
GTAACAACAAGGGTTCGCTGATCGTCGTGCTTCGTTATTGCGTAATCTCG
CGGGTGTCCGCACAGAGTATTTTTGAAGAGGATTGACAGCCGTGTCCGTT
CAAAAGTGTTTCGAATATCGCACATACTTCGTACCAGGTATGATAAAAAC
ATGGCTTTGCTCTCTGCTGATGTATTGTGCAGAAGTCTGGAATCAAAAGT
ACTGGGATGATTTTGTGAAATTTCCCTCCATGCTTGTTCTCGGGCGGGGC
CGTCTACGCCAGAGACAGAGCCCCCCCCCCCCCCTCCCGGACGTTGTGTC
TGTTGTTCTTGCCTCGAGACGTACACGTAGCAAATTGCGTTGTTTTCACA
GAGGAGAGAGAGATTTTCACACGAAGCGCTGCAAGATCGCGAGCCAGCTA
GCTGCCTGTGGGCCTTCTCATTTGCGGACGTCTGCCTCTTGCTTTGCCTG
TGAGCTCTGATCCAGTGTTGTGACCAAAAGTGAAAATTTTGGTAAATACA
TCCAACATTTTTTCCTGCCCATGACTCCCTGCAATACTTTAAAGCTTACC
AGTGTGCGACTCGGGTGCTTCTTTCCTGTCTGTCTATCAAAATCAGCCAA
ATCGAGAATTGAATTTAAAACTAGAAATAAAAAAAAAAAATGTCTGGC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig18:488694..493391+

>mRNA_P-littoralis_Contig18.105.1 ID=mRNA_P-littoralis_Contig18.105.1|Name=mRNA_P-littoralis_Contig18.105.1|organism=Pylaiella littoralis U1_48|type=CDS|length=228bp|location=Sequence derived from alignment at P-littoralis_Contig18:488694..493391+ (Pylaiella littoralis U1_48)
ATGGCGAAAGGAGGGCCGGACTTGAAACGCTACATGGACAAGACGCTGTC
TCTCAAGCTCAACGGAAACCGAACTGTCAAGGGTGTCTTGCGAGGTTACG
ACCCGTTCATGAACCTGGTGTTGGACGAGACGACAGATCCTGCCTCCTCT
GACAAGAAGATGGGAATGGTCATCATCAGAGGAAACAGCGTTGTGCAGTT
CGAAATCCTCGACCCTCTCCGCTTTTAA
back to top