mRNA_P-littoralis_Contig18.99.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig18.99.1
Unique NamemRNA_P-littoralis_Contig18.99.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig18.99.1 vs. uniprot
Match: D8LRR2_ECTSI (Threonylcarbamoyl-AMP synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRR2_ECTSI)

HSP 1 Score: 642 bits (1656), Expect = 7.180e-227
Identity = 357/466 (76.61%), Postives = 385/466 (82.62%), Query Frame = 1
Query:  274 MSMTARASSSSLEGIQQ-------SCEGRGIPGPSSPLQVEADGATTAVE---TPGPVLARVAPAEEPWLTEAGARLRAGKLVAFPTETVYGLGANALSEEAVLKIFQAKQRPLTDPLIVHVPDTASALAMVDFEAEGGGGQKARRLLDLLGEKLWPGPLTLILKAAETVPLCITAGTGFVGVRCPAHPVTRQLLSLAGVPVAAPSANRFGHVSPTQAAHVMEDLGGSDILILDGDASGACGLGIESTVAKIDVENNQILILRMGGVTQDRIREALKEGGEDFSGISVHAGSVAGGKTEVRMKSQQEGGQTASSLTEPAKAEGQAPGE-----TLFAHCSRQLLRHYSPDLEVFRVLGATSSSTSGRIDGVGELADLVDMARTSVVVDFAGQLIGLQASALAYSDLSVEGNADEAAEGLFRALRWAETQPSAQRLLIAGLPSTSSGDLAAAVNDRIYRSASGKTIS 1626
            MS T+R   S+ E +QQ       SCE               DG T A E   T   VL RV PAEEPWLTEAGARLR+GKLVAFPTETVYGLGANALSE+AVLKIFQAKQRPLTDPLIVHVPDTA ALA+VDFE EGGGGQKARRLLDLLGEKLWPGPLTLI KA + VP CITAGTGFVGVRCPAHPVTRQLLS+AGVPVAAPSANRFGHVSPTQA HVMEDLGGSDIL+LDGD SGACG+GIESTVAKID  N++ILILRMGGVTQDRIR+ALKEGGE+FSGISV+AGSVAGGKTE + + ++E     S   EPAK EGQAPG       +    + QLLRHYSPDLEVFRVLGAT  STSGR+ G GELADL  MARTSVVVDFAGQL GLQASA+AYSDLS+EG+ADEAA+GLFRALRWAETQPSAQRLLIAGLPS S+GD+AAAVNDRIYRSASGKTIS
Sbjct:    1 MSTTSRVIPSASEDLQQRDSTGNASCE---------------DGVTPAGERATTATAVLGRVVPAEEPWLTEAGARLRSGKLVAFPTETVYGLGANALSEDAVLKIFQAKQRPLTDPLIVHVPDTAGALAVVDFEVEGGGGQKARRLLDLLGEKLWPGPLTLIAKADKKVPPCITAGTGFVGVRCPAHPVTRQLLSIAGVPVAAPSANRFGHVSPTQAMHVMEDLGGSDILVLDGDTSGACGVGIESTVAKIDAANDRILILRMGGVTQDRIRDALKEGGEEFSGISVYAGSVAGGKTEAKGEEEREREARGSLKDEPAKDEGQAPGLMRQLCAISDATTGQLLRHYSPDLEVFRVLGATPGSTSGRMVGGGELADLASMARTSVVVDFAGQLKGLQASAVAYSDLSIEGSADEAAKGLFRALRWAETQPSAQRLLIAGLPSKSNGDMAAAVNDRIYRSASGKTIS 451          
BLAST of mRNA_P-littoralis_Contig18.99.1 vs. uniprot
Match: A0A835YWE4_9STRA (Threonylcarbamoyl-AMP synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWE4_9STRA)

HSP 1 Score: 302 bits (774), Expect = 1.820e-94
Identity = 194/414 (46.86%), Postives = 239/414 (57.73%), Query Frame = 1
Query:  415 VLARVAPAEEPWLTEAGARLRAGKLVAFPTETVYGLGANALSEEAVLKIFQAKQRPLTDPLIVHVPDTASALAMVDFEAEGGGGQKARRLLDLLGEKLWPGPLTLILKAAETVPLCITAGTGFVGVRCPAHPVTRQLLSLAGVPVAAPSANRFGHVSPTQAAHVMEDLGGSDILILDGDASGACGLGIESTVAKI------DVENNQILILRMGGVTQDRIREALKEGGEDFSGISVHAGSVAGGKTEVRMKSQQEGGQTASSLTEPAKAEGQAPGETLFAHCSRQLLRHYSPDLEVFRVLGATSSSTSGRIDGVGELADLVDMART----SVVVDFAGQLIGLQASALAYSDLSVEGNADEAAEGLFRALRWAETQPSAQRLLIAGLPSTSSGDLAAAVNDRIYRSASGKTIS 1626
            +LAR+    +  L +AG  LR G LVAFPTETVYGLGA+AL E+AV  +F AK RPLTDPLIVHV D  +AL ++DF+    G  + + L   L    WPGPLTL+  A+  VP  +TA TGFVGVRCP H V   LL  A VPV APSANRFGHVSPT AAHV+ DLG S + I+DG A+  C +GIESTVAK+                R G VT + +  AL  GG  F G +V      G + E   +                    +APG         QLLRHYSPDLE F +   +S  T   I  +     +    RT    SVV+DF G+L  L A   AY DLS  G+ADEAA+ +F ALRWAE    A+R+L+A LP+ S G LAAAVNDR+ R+ASGK ++
Sbjct:    9 ILARIVSDSQESLHQAGQELRDGGLVAFPTETVYGLGADALQEDAVRSVFVAKGRPLTDPLIVHVSDPEAALPVLDFD----GRPEVKALFQHLAATFWPGPLTLVSLASAAVPPVVTASTGFVGVRCPDHRVAAALLRAARVPVCAPSANRFGHVSPTSAAHVLADLGASRVTIVDGGAA-TCAVGIESTVAKLVPRAAXXXXXXXXXXXRRGAVTAEALAGALLAGG--FDGWAVRVSRARGAEDEAEAQ--------------------EAPG---------QLLRHYSPDLEAFNIASHSSHITHLHI--IPPSFFVSHTPRTPRCCSVVIDFNGRLSALSARCAAYRDLSPAGSADEAAKNIFEALRWAEAYVGAERVLMASLPAPSEGSLAAAVNDRMRRAASGKLVA 384          
BLAST of mRNA_P-littoralis_Contig18.99.1 vs. uniprot
Match: A0A8K1CD12_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CD12_PYTOL)

HSP 1 Score: 290 bits (741), Expect = 6.070e-90
Identity = 182/389 (46.79%), Postives = 236/389 (60.67%), Query Frame = 1
Query:  460 AGARLRAGKLVAFPTETVYGLGANALSEEAVLKIFQAKQRPLTDPLIVHVPDTASALAMVDFEAEGGGGQKARRLLDLLGEKLWPGPLTLILKAAETVPLCITAGTGFVGVRCPAHPVTRQLLSLAGVPVAAPSANRFGHVSPTQAAHVMEDLGGSDIL-ILDGDASGACGLGIESTVAKIDVENNQILILRMGGVTQDRIREALKEGGEDFSGISVHAGSVAGGKTEVRMKSQQEGGQTASSLTEPAKAEGQAPGETLFAHCSRQLLRHYSPDLEVFRVLGATSSSTSGRIDGVGELADLVDMARTS--VVVDFAGQLIGLQASALAYSDLSVEGNADEAAEGLFRALRWAETQPSAQRLLIAGLPSTSSGDLAAAVNDRIYRSASGK 1617
            AGA LRAG+L+AFPTETVYGLGANAL+ +AVL IF AK RPLTDPLIVHVP    A+ +VD   +G      R L + LG+  WPGPLTLI KA   +PL ++A TGFVG+RCP HP+ + LL  A VPVAAPSANRFGHVSPT A HVM+DLG    L I+D      C +GIESTV KI  E N+++I R GGV++  + + L +  E+  G    A  +   K EV+  S               +A+ QAPG         QLL HY+PD++ + V            D   E  D+   A  S  VV+DF G+L  L+   LAY+DLSV G+  EA++ +F  LRWAE     +R++I  + ST   + AAA++DR++R+ASGK
Sbjct:   15 AGAELRAGRLIAFPTETVYGLGANALNPDAVLSIFAAKGRPLTDPLIVHVPTMTEAVELVDLTPKG------RVLFECLGKAFWPGPLTLISKAVPALPLTLSANTGFVGIRCPKHPIAQALLQAAKVPVAAPSANRFGHVSPTSAQHVMDDLGACQHLGIIDDANESTCEVGIESTVVKIVPEENKLIIFRRGGVSESALAQVLAQYAEELGG----AYEIVAIKREVKDDS--------------TEAQ-QAPG---------QLLTHYAPDVDTYLVQ-----------DAADEAFDVTLTANLSKWVVLDFNGRLAALKDRVLAYNDLSVAGDVLEASQHIFDYLRWAENVAGVERVVITDV-STVDHEHAAALHDRMFRAASGK 357          
BLAST of mRNA_P-littoralis_Contig18.99.1 vs. uniprot
Match: A0A7S2RJ90_9STRA (Threonylcarbamoyl-AMP synthase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RJ90_9STRA)

HSP 1 Score: 290 bits (742), Expect = 6.020e-89
Identity = 178/401 (44.39%), Postives = 234/401 (58.35%), Query Frame = 1
Query:  436 AEEPWLTEAGARLRAGKLVAFPTETVYGLGANALSEEAVLKIFQAKQRPLTDPLIVHVPDTASALAMVDFEAEGGGGQKARRLLDLLGEKLWPGPLTLILKAAETVPLCITAGTGFVGVRCPAHPVTRQLLSLAGVPVAAPSANRFGHVSPTQAAHVMEDLGGSDILILDGDASGA----CGLGIESTVAKIDVENNQILILRMGGVTQDRIREALKEGGEDFSGISVHAGSVAGGKTEVRMKSQQEGGQTASSLTEPAKAEGQAPGETLFAHCSRQLLRHYSPDLEVFRVLGATSSSTSGRIDGVGELADLVDMARTSVVVDFAGQLIGLQASALAYSDLSVEGNADEAAEGLFRALRWAETQPSAQRLLIAGLPSTSSGDLAA-AVNDRIYRSASGKTI 1623
            A +  + +A  RLR G LVAFPTETVYGLGANAL+ +AVLK+F  K RPLTDPLIVHV   + AL +VD E EG      R + D+L +K WPG LT++ +A   +P  ++AGTG VGVR PAHP+  +L+  AGVPVAAPSANRFGHVSPT AAHVM DLG S I +LDGD +G     C  GIESTV KIDVE  ++++ R G +++  +R AL+               VAG     R++  Q+      S T P  AE   P   +      QL+ HY+PDL  +       + T  R D              +VV+DF G ++ L+   L Y DLS  G  +EAA  LF +LRW E    A R++IA +   +  D AA ++ DRI+R+ASG+ +
Sbjct:   76 ASDEGIADAALRLREGGLVAFPTETVYGLGANALNTQAVLKVFSTKGRPLTDPLIVHVASKSDALQVVDMEGEG------RAVFDVLADKFWPGGLTVVARAQPHIPDTLSAGTGSVGVRVPAHPLALRLIREAGVPVAAPSANRFGHVSPTCAAHVMADLGASPIAVLDGDQAGVVQHTCRHGIESTVVKIDVEERELVLFRRGAISEASLRRALE---------------VAGLSETFRVRVVQKHVPMDQSAT-PVAAETAVPASVVGQEAPGQLITHYAPDLPTYLATEDPEAETLARQD-----------LEHTVVLDFGGSMVHLKPHTLGYQDLSPGGTCEEAARSLFASLRWTEEVEGADRVVIADVEQLAPQDEAALSLADRIFRAASGRRV 443          
BLAST of mRNA_P-littoralis_Contig18.99.1 vs. uniprot
Match: G5A7T0_PHYSP (Threonylcarbamoyl-AMP synthase n=3 Tax=Phytophthora TaxID=4783 RepID=G5A7T0_PHYSP)

HSP 1 Score: 285 bits (730), Expect = 2.660e-88
Identity = 171/390 (43.85%), Postives = 239/390 (61.28%), Query Frame = 1
Query:  460 AGARLRAGKLVAFPTETVYGLGANALSEEAVLKIFQAKQRPLTDPLIVHVPDTASALAMVDFEAEGGGGQKARRLLDLLGEKLWPGPLTLILKAAETVPLCITAGTGFVGVRCPAHPVTRQLLSLAGVPVAAPSANRFGHVSPTQAAHVMEDLGG-SDILILDGDASGACGLGIESTVAKIDVENNQILILRMGGVTQDRIREALKEGGEDFSGISVHAGSVAGGKTEVRMKSQQEGGQTASSLTEPAKAEGQAPGETLFAHCSRQLLRHYSPDLEVFRVLGATSSSTSGRIDGVGELADLVDMARTSVVVDFAGQLIGLQASALAYSDLSVEGNADEAAEGLFRALRWAETQPSAQRLLIAGLPSTSSGDLAAAVNDRIYRSASGKTIS 1626
            A  +LR+G+LV+FPTETVYGLGANAL+ EAVL IF AK RPLTDPLIVHVP    A+ +VD    G      R   + LG+  WPGPLTLI KA   +PL ++A TGFVG+RCP HP+ + LL  A VPVAAPSANRFGHVSPT A HVM+DLG  +++ +++ D +G C +GIESTV KI  E  ++++ R GGV++  + + LKE  E   G+      V   + E +M++               K   QAPG         Q++ HY+PD++ +       +  +  +D   +     D++R  VV+DF G+L+GL+    AY DLS  G+  EA++ +F +LRW+E     +R++I G+ S    + AAA++DR+YR+ASGK  S
Sbjct:   15 AAQQLRSGQLVSFPTETVYGLGANALNPEAVLSIFAAKARPLTDPLIVHVPAMEDAVKLVDLTPSG------RLAFECLGKAFWPGPLTLIAKAVPALPLTLSANTGFVGLRCPKHPIAQALLKAAQVPVAAPSANRFGHVSPTTAKHVMDDLGACTNLSVIEADETGCCEVGIESTVVKIVPEERKLIVFRRGGVSEQALSQVLKENAELLGGMY----DVVTIQKEAKMQT---------------KEAQQAPG---------QMITHYAPDVDTYLY----QADAADEMDASSKQ----DVSRW-VVIDFRGKLVGLKDRVRAYMDLSPNGDVAEASQRIFDSLRWSENVQGVERVVITGVISEPH-EQAAALHDRMYRAASGKQRS 360          
BLAST of mRNA_P-littoralis_Contig18.99.1 vs. uniprot
Match: A0A8J6C1I1_DIALT (Threonylcarbamoyl-AMP synthase n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6C1I1_DIALT)

HSP 1 Score: 284 bits (727), Expect = 2.400e-87
Identity = 184/423 (43.50%), Postives = 236/423 (55.79%), Query Frame = 1
Query:  421 ARVAPAEEPWLTEAGARLRAGKLVAFPTETVYGLGANALSEEAVLKIFQAKQRPLTDPLIVHVPDTASALAMVDFEAEGGGGQKARRLLDLLGEKLWPGPLTLILKAAETVPLCITAGTGFVGVRCPAHPVTRQLLSLAGVPVAAPSANRFGHVSPTQAAHVMEDLGGSDILILDGDASGACGLGIESTVAKIDVENNQILILRMGGVTQDRIREALKEGGEDFSGISVHAGSVAGGKTEVRMKSQQEGGQTASSLTEPAKAEGQAPGETLFAHCSRQLLRHYSPDLEVFRVL--------GATS-------------SSTSGRIDGVGELADLVDMARTSVVVDFAGQLIGLQASALAYSDLSVEGNADEAAEGLFRALRWAETQPSAQRLLIAGLPSTSSGDL-AAAVNDRIYRSASGKTI 1623
            A V  A+   L   G  LRAGKLVAFPTETV+GLGANAL EEAVL IF+ K RPLTDPLIVHVPD A+A A+   +         R ++D+L    WPGPLT++ +A+  +PLC++AGTGFVGVRCPAH V   LL  A +PVAAPSANRFGHVSPT A HV++DLG  DI +LD      C +GIESTVA+IDV   Q+L+LR GG+++  +R AL               + AG + EV  +        A+  T  A A+G A      AH   QLL HY+PD+  F  L        GA               +  S   +     A        + V+DF G    L     AY DLS  G+  EA+  LF  LRWAE+   A+R+LIA + +    D    A+ DR++R+ASG+ +
Sbjct:   12 ATVLAADAAGLRRGGELLRAGKLVAFPTETVFGLGANALDEEAVLDIFRVKGRPLTDPLIVHVPDAAAAPALFAHD------DATRAVVDVLAAAFWPGPLTIVARASPRLPLCVSAGTGFVGVRCPAHAVAVALLREAAIPVAAPSANRFGHVSPTSAQHVLDDLGAHDIAVLDAPG---CDVGIESTVARIDVSQAQLLVLRRGGISERALRAAL---------------AAAGLELEVVAR--------AAEHTPAALADGVA------AHAPGQLLTHYAPDVPTFLALPQRGVDGGGAXXXXXXXXXXXXXXPNDASTAAEPAATAASAAPTLAATCVIDFGGAFAPLIGRCAAYRDLSPSGSVGEASRRLFETLRWAESTAGARRVLIADVMALRVEDEHVGALYDRMFRAASGRRV 396          
BLAST of mRNA_P-littoralis_Contig18.99.1 vs. uniprot
Match: M4BCJ7_HYAAE (Threonylcarbamoyl-AMP synthase n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BCJ7_HYAAE)

HSP 1 Score: 278 bits (710), Expect = 2.640e-85
Identity = 173/387 (44.70%), Postives = 242/387 (62.53%), Query Frame = 1
Query:  460 AGARLRAGKLVAFPTETVYGLGANALSEEAVLKIFQAKQRPLTDPLIVHVPDTASALAMVDFEAEGGGGQKARRLLDLLGEKLWPGPLTLILKAAETVPLCITAGTGFVGVRCPAHPVTRQLLSLAGVPVAAPSANRFGHVSPTQAAHVMEDLGG-SDILILDGDASGACGLGIESTVAKIDVENNQILILRMGGVTQDRIREALKEGGEDFSGISVHAGSVAGGKTEVRMKSQQEGGQTASSLTEPAKAEGQAPGETLFAHCSRQLLRHYSPDLEVFRVLGATSSSTSGRIDGVGELADLVDMARTSVVVDFAGQLIGLQASALAYSDLSVEGNADEAAEGLFRALRWAETQPSAQRLLIAGLPSTSSGDLAAAVNDRIYRSASGK 1617
            A  +LR G L+AFPTETVYGLGANAL+ +AVL IF AK RPLTDPLIVHVP    A+ +VD    G      R++   LG+  WPGPLTLI KA   +PL ++A TGFVG+RCP HP+ + LL  A VPVAAPSANRFGHVSPT A HV++DLG   ++ IL+    G C +GIESTV KI  E +++++ R GGV++  +++ L+E  E           + GG+ EV +  Q+E    A+  TE A+   QAPG         Q++ HY+PD++ +       +  S ++D     +   D++   VV+DF G+L+ L+    AY DLS  G+  EA++ +F +LRW+E     +R++I+G+ S S    AAA++DR+YR+ASGK
Sbjct:   15 AAEQLRLGNLIAFPTETVYGLGANALNPKAVLSIFTAKARPLTDPLIVHVPALEDAVKLVDLTPLG------RQVFHCLGQAFWPGPLTLIAKAISDLPLTLSANTGFVGLRCPEHPIAQALLKAAKVPVAAPSANRFGHVSPTTAQHVLDDLGSCKNLSILEASDEGCCKVGIESTVVKIMPEEHKLIVFRRGGVSELMLKQVLRENAE-----------LLGGQYEV-VTIQEE----ATMQTEEAQ---QAPG---------QMITHYAPDVDTYLF----QADASEKMDA----SSAQDVSHW-VVIDFHGKLVSLKNRVRAYLDLSPTGDVVEASQRIFDSLRWSENVEGVERVVISGVASESHQQ-AAALHDRMYRAASGK 357          
BLAST of mRNA_P-littoralis_Contig18.99.1 vs. uniprot
Match: H3GAE3_PHYRM (Threonylcarbamoyl-AMP synthase n=16 Tax=Phytophthora TaxID=4783 RepID=H3GAE3_PHYRM)

HSP 1 Score: 277 bits (708), Expect = 5.080e-85
Identity = 171/392 (43.62%), Postives = 239/392 (60.97%), Query Frame = 1
Query:  460 AGARLRAGKLVAFPTETVYGLGANALSEEAVLKIFQAKQRPLTDPLIVHVPDTASALAMVDFEAEGGGGQKARRLLDLLGEKLWPGPLTLILKAAETVPLCITAGTGFVGVRCPAHPVTRQLLSLAGVPVAAPSANRFGHVSPTQAAHVMEDLGG-SDILILDGDASGACGLGIESTVAKIDVENNQILILRMGGVTQDRIREALKEGGEDFSGISVHAGSVAGGKTEVRMKSQQEGGQTASSLTEPAKAEGQAPGETLFAHCSRQLLRHYSPDLE--VFRVLGATSSSTSGRIDGVGELADLVDMARTSVVVDFAGQLIGLQASALAYSDLSVEGNADEAAEGLFRALRWAETQPSAQRLLIAGLPSTSSGDLAAAVNDRIYRSASGKTIS 1626
            A  +L+ G+LV+FPTETVYGLGANAL+ EAVL IF+AK RPLTDPLIVHVP    A+ +VD    G      R + + LG+  WPGPLTLI KA   +PL ++A TGFVG+RCP HP+ + LL  A VPVAAPSANRFGHVSPT A HVM+DLG  +++ +++ D  G C +GIESTV KI  E  ++++ R GGV++  + + L++  E           + GG+ EV    ++   QT        K   QAPG         Q++ HY+PD++  +++V  A     S +           D++R  VV+DF G+L  L+    AY DLS  G+  EA++ +F +LRW+E     +R++I G+ S    + AAA++DR+YR+ASGK  S
Sbjct:   15 AAQQLKLGQLVSFPTETVYGLGANALNPEAVLSIFEAKARPLTDPLIVHVPALEDAVKLVDLTPSG------REVFECLGKAFWPGPLTLIAKAVPELPLTLSANTGFVGLRCPKHPIAQALLKEAKVPVAAPSANRFGHVSPTTAKHVMDDLGACANLSVIEADEEGCCEVGIESTVVKIVPEERKLIVFRRGGVSELALEQVLQKNAE-----------LLGGRYEVVTIQKEAKMQT--------KEAQQAPG---------QMITHYAPDVDTYLYQVGAAEEMDASSK----------QDVSRW-VVIDFNGKLARLKDRVRAYLDLSPSGDVAEASQRIFDSLRWSENVQGVERVVITGVASEHH-EQAAALHDRMYRAASGKQRS 360          
BLAST of mRNA_P-littoralis_Contig18.99.1 vs. uniprot
Match: A0A6G0X0Z3_9STRA (Threonylcarbamoyl-AMP synthase n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X0Z3_9STRA)

HSP 1 Score: 275 bits (702), Expect = 3.510e-84
Identity = 179/396 (45.20%), Postives = 230/396 (58.08%), Query Frame = 1
Query:  451 LTEAGARLRAGKLVAFPTETVYGLGANALSEEAVLKIFQAKQRPLTDPLIVHVPDTASALAMVDFEAEGGGGQKARRLLDLLGEKLWPGPLTLILKAAETVPLCITAGTGFVGVRCPAHPVTRQLLSLAGVPVAAPSANRFGHVSPTQAAHVMEDLGG--SDILILDGDASGACGLGIESTVAKIDVENNQILILRMGGVTQDRIREALKEGGEDFSGIS-VHAGSVAGGKTEVRMKSQQEGGQTASSLTEPAKAEGQ-APGETLFAHCSRQLLRHYSPDLEVFRVLGATSSSTSGRIDGVGELADLVDMARTSVVVDFAGQLIGLQASALAYSDLSVEGNADEAAEGLFRALRWAETQPSAQRLLIAGLPSTSSGDLAAAVNDRIYRSASGKTIS 1626
            L  AG  LR+G+LVAFPTETVYGLGANAL   AVL IF+AK RPLTDPLIVHVP    AL++V  + +G       ++   L    WPGPLTLI  A + +P  ++A TGFVG+R P HP+ + +L  A VPVAAPSANRFGHVSPT A HV+ DLG     + ++D     +C +GIESTVAK++   NQ+LI R GGV++  + + L    E   GI  V+A  V     E                   A A GQ APG         QLL HY+PD+E F + GA           VG      D  ++ V+VDF G++  L+ S   Y DLS  G+   AA  +F ALRWAE  P+AQR+LI  + S  + + AAA++DR+YR+ASGK  S
Sbjct:   10 LKRAGEELRSGRLVAFPTETVYGLGANALDAPAVLSIFEAKGRPLTDPLIVHVPTVQDALSLVQLDDKG------TQIFQTLARAFWPGPLTLIATAVDALPREVSANTGFVGIRIPNHPIAQAMLREAKVPVAAPSANRFGHVSPTSAQHVLNDLGHYHKGLHVIDDAEHSSCEVGIESTVAKLEPSLNQLLIFRRGGVSEAALHQVLNV--EHQLGIDIVYAQKVVKESDE-------------------AAAVGQVAPG---------QLLTHYAPDVETFMLQGA-----------VGRNVAPTDDMKSWVIVDFHGRVSALKDSVAGYLDLSPTGDIPAAAHNVFDALRWAELVPNAQRILIPDV-SDVAHEHAAALHDRLYRAASGKRAS 357          
BLAST of mRNA_P-littoralis_Contig18.99.1 vs. uniprot
Match: A0A484E5W0_BRELC (Threonylcarbamoyl-AMP synthase n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E5W0_BRELC)

HSP 1 Score: 274 bits (701), Expect = 5.960e-84
Identity = 167/402 (41.54%), Postives = 241/402 (59.95%), Query Frame = 1
Query:  418 LARVAPAEEPWLTEAGARLRAGKLVAFPTETVYGLGANALSEEAVLKIFQAKQRPLTDPLIVHVPDTASALAMVDFEAEGGGGQKARRLLDLLGEKLWPGPLTLILKAAETVPLCITAGTGFVGVRCPAHPVTRQLLSLAGVPVAAPSANRFGHVSPTQAAHVMEDLGG-SDILILDGDASGACGLGIESTVAKIDVENNQILILRMGGVTQDRIREALKEGGEDFSGISVHAGSVAGGKTEVRMKSQQEGGQTASSLTEPAKAEGQAPGETLFAHCSRQLLRHYSPDLEVFR-VLGATSSSTSGRIDGVGELADLVDMARTSVVVDFAGQLIGLQASALAYSDLSVEGNADEAAEGLFRALRWAETQPSAQRLLIAGLPSTSSGDLAAAVNDRIYRSASGK 1617
            +AR+  A+      A  +L+ G+LV+FPTETVYGLGANAL   A++ IF+AK RPLTDPLIVHVP    AL +VD    G      R+  + LG+  WPGPLTL+ KA   +PL ++A TGFVG+RCP HP+ + LL  A +PVAAPSANRFGHVSPT A HVM+DLG   ++ ++D    G+C +GIESTV KI  E  ++++ R GGV++  +++ L+E  E   G+     ++   + E +M++ +  GQ             QAPG         QL+ HY+PD++ +  V  AT +  +   + V             VV+DF G+L+ L+    AY DLS  G+  EA++ +F +LRWAE     +R++I G+      + AAA++DR++R+ASGK
Sbjct:    1 MARLLKADADGFAFAARQLQLGQLVSFPTETVYGLGANALDPNAIMAIFEAKARPLTDPLIVHVPTLEDALKLVDMTPTG------RQAFECLGKAFWPGPLTLVAKAVPELPLSLSANTGFVGLRCPKHPIAQALLKEAKIPVAAPSANRFGHVSPTTAKHVMDDLGACKNLSVIDAAGEGSCEIGIESTVIKIVPEERKVILFRRGGVSEQALKKVLEEHAE-MLGVRYELVTI---RNEAKMQTNE--GQ-------------QAPG---------QLITHYAPDVDTYLYVTDATKTMNASENENVSGW----------VVIDFHGKLVRLKNRVRAYLDLSPTGDVAEASQRIFDSLRWAENVQGVERVIITGVI-MEPHEQAAALHDRMFRAASGK 357          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig18.99.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRR2_ECTSI7.180e-22776.61Threonylcarbamoyl-AMP synthase n=1 Tax=Ectocarpus ... [more]
A0A835YWE4_9STRA1.820e-9446.86Threonylcarbamoyl-AMP synthase n=1 Tax=Tribonema m... [more]
A0A8K1CD12_PYTOL6.070e-9046.79Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7S2RJ90_9STRA6.020e-8944.39Threonylcarbamoyl-AMP synthase n=1 Tax=Rhizochromu... [more]
G5A7T0_PHYSP2.660e-8843.85Threonylcarbamoyl-AMP synthase n=3 Tax=Phytophthor... [more]
A0A8J6C1I1_DIALT2.400e-8743.50Threonylcarbamoyl-AMP synthase n=2 Tax=Diacronema ... [more]
M4BCJ7_HYAAE2.640e-8544.70Threonylcarbamoyl-AMP synthase n=1 Tax=Hyaloperono... [more]
H3GAE3_PHYRM5.080e-8543.62Threonylcarbamoyl-AMP synthase n=16 Tax=Phytophtho... [more]
A0A6G0X0Z3_9STRA3.510e-8445.20Threonylcarbamoyl-AMP synthase n=1 Tax=Aphanomyces... [more]
A0A484E5W0_BRELC5.960e-8441.54Threonylcarbamoyl-AMP synthase n=1 Tax=Bremia lact... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig18contigP-littoralis_Contig18:474505..482972 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LRR2
PFAMsGrp1_Fun34_YaaH,SUA5,Sua5_yciO_yrdC
Model size1637
Max annot lvl2759|Eukaryota
KEGG rclassRC00745
KEGG koko:K07566
KEGG ReactionR10463
Hectar predicted targeting categorysignal peptide
GOsGO:0000049,GO:0000723,GO:0002949,GO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0003723,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006396,GO:0006399,GO:0006400,GO:0006450,GO:0006725,GO:0006807,GO:0006996,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0032200,GO:0034470,GO:0034641,GO:0034660,GO:0042162,GO:0042592,GO:0043047,GO:0043170,GO:0043412,GO:0043565,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0051276,GO:0060249,GO:0065007,GO:0065008,GO:0070525,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0098847,GO:1901360,GO:1901363
Exons9
Evalue1.18e-227
EggNOG OGsCOG0009@1|root,KOG3051@2759|Eukaryota
Ec32 ortholog descriptionPutative GTP-binding controlling metal-binding domain
Ec32 orthologEc-08_002110.1
EC2.7.7.87
DescriptionL-threonylcarbamoyladenylate synthase
Cds size1635
COG categoryJ
BRITEko00000,ko01000,ko03009,ko03016
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig18.99.1prot_P-littoralis_Contig18.99.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig18 474505..482972 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789864.3227015-CDS-P-littoralis_Contig18:474504..4748301680789864.3227015-CDS-P-littoralis_Contig18:474504..474830Pylaiella littoralis U1_48CDSP-littoralis_Contig18 474505..474830 +
1680789864.3336654-CDS-P-littoralis_Contig18:475274..4754531680789864.3336654-CDS-P-littoralis_Contig18:475274..475453Pylaiella littoralis U1_48CDSP-littoralis_Contig18 475275..475453 +
1680789864.3461533-CDS-P-littoralis_Contig18:475871..4759331680789864.3461533-CDS-P-littoralis_Contig18:475871..475933Pylaiella littoralis U1_48CDSP-littoralis_Contig18 475872..475933 +
1680789864.3541706-CDS-P-littoralis_Contig18:476404..4765521680789864.3541706-CDS-P-littoralis_Contig18:476404..476552Pylaiella littoralis U1_48CDSP-littoralis_Contig18 476405..476552 +
1680789864.3624156-CDS-P-littoralis_Contig18:480721..4808901680789864.3624156-CDS-P-littoralis_Contig18:480721..480890Pylaiella littoralis U1_48CDSP-littoralis_Contig18 480722..480890 +
1680789864.3768523-CDS-P-littoralis_Contig18:481256..4816211680789864.3768523-CDS-P-littoralis_Contig18:481256..481621Pylaiella littoralis U1_48CDSP-littoralis_Contig18 481257..481621 +
1680789864.385861-CDS-P-littoralis_Contig18:481960..4820841680789864.385861-CDS-P-littoralis_Contig18:481960..482084Pylaiella littoralis U1_48CDSP-littoralis_Contig18 481961..482084 +
1680789864.3946872-CDS-P-littoralis_Contig18:482446..4826161680789864.3946872-CDS-P-littoralis_Contig18:482446..482616Pylaiella littoralis U1_48CDSP-littoralis_Contig18 482447..482616 +
1680789864.4038637-CDS-P-littoralis_Contig18:482880..4829721680789864.4038637-CDS-P-littoralis_Contig18:482880..482972Pylaiella littoralis U1_48CDSP-littoralis_Contig18 482881..482972 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig18.99.1

>prot_P-littoralis_Contig18.99.1 ID=prot_P-littoralis_Contig18.99.1|Name=mRNA_P-littoralis_Contig18.99.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=545bp
RAQFNQSTGCSLLMNREQLSTIVLIVLFCGRTGALSMLVSLSALRTYPFS
RAAFSRVILLVRSHHGSQRRIELTPRRQPPVALRRGGLALAMSMTARASS
SSLEGIQQSCEGRGIPGPSSPLQVEADGATTAVETPGPVLARVAPAEEPW
LTEAGARLRAGKLVAFPTETVYGLGANALSEEAVLKIFQAKQRPLTDPLI
VHVPDTASALAMVDFEAEGGGGQKARRLLDLLGEKLWPGPLTLILKAAET
VPLCITAGTGFVGVRCPAHPVTRQLLSLAGVPVAAPSANRFGHVSPTQAA
HVMEDLGGSDILILDGDASGACGLGIESTVAKIDVENNQILILRMGGVTQ
DRIREALKEGGEDFSGISVHAGSVAGGKTEVRMKSQQEGGQTASSLTEPA
KAEGQAPGETLFAHCSRQLLRHYSPDLEVFRVLGATSSSTSGRIDGVGEL
ADLVDMARTSVVVDFAGQLIGLQASALAYSDLSVEGNADEAAEGLFRALR
WAETQPSAQRLLIAGLPSTSSGDLAAAVNDRIYRSASGKTISAK*
back to top

mRNA from alignment at P-littoralis_Contig18:474505..482972+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig18.99.1 ID=mRNA_P-littoralis_Contig18.99.1|Name=mRNA_P-littoralis_Contig18.99.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=8468bp|location=Sequence derived from alignment at P-littoralis_Contig18:474505..482972+ (Pylaiella littoralis U1_48)
AGAGCACAGTTCAATCAGTCCACAGGTTGCTCTCTCTTGATGAATCGTGA GCAACTTTCGACTATCGTGCTTATCGTGCTCTTCTGTGGTCGCACGGGAG CTCTGTCTATGCTTGTAAGCTTGTCAGCGCTCAGGACGTATCCCTTTTCT CGTGCGGCTTTCTCGAGGGTTATCCTACTCGTGAGGTCACACCACGGCTC ACAGAGACGAATCGAGTTGACACCACGACGTCAACCGCCCGTGGCGTTGA GAAGAGGAGGCCTAGCTTTGGCAATGTCGATGACGGCGAGAGCCTCGTCG TCATCCTTGGAAGGTATTCAGCAAAGGTTCGTTGTCGCACTGCTGTGATG GGTGGTAGGACAGAGTGGGACTTGCCTGCATCTCTCTCTCTCTCTCTCTC TCTCCTCTGTTGGGGCACACCCTGTCACCCACGTACGGCGGCACCAGTAC ACCCCGGGAGGAAGAGGTACCTAGAACGCCGTTTGTTCCGATTGCCTGTA CCGCCAAGAAAAGCGTAGCGTATTGACCTGACTGTTGTAAGCTGCATGTG TTTCCAGTTTCCGTTACCAGAGGGTTTTCGTGCGAGCGAAGCGGACATGC GGCATAAAAACGGGATCGCGAGTCTCGACGCCAGCATCGGTTTGGACAGC GCACCCAAATGACGACGATTCCGTCATGTGTAGAGAATACACAAGCCCAC TTGTAGCTAACGTTGGTCTGTTCGCATTGCCTCCTGCTTTCGGGGTTCCG GTGGTGCATGTTTCTGGCAGCTGCGAGGGTAGAGGTATCCCTGGACCTTC ATCGCCACTACAGGTAGAAGCAGACGGCGCCACAACCGCCGTTGAAACAC CTGGTCCTGTGTTGGCGCGTGTGGCGCCTGCCGAGGAACCATGGCTGACT GAAGCCGGCGCCCGTCTTCGTGCGGGCAAACTCGTGGCTTTTCCCACAGG TGTTTTGAGGCAGAAGAAAGGAAAGAGAGGGCTAGCGGTTACTTTCGGTC CCAAGCAGCCAAGCTCTGTCGCAGACTCGATTGTGTTGAACTCAACAAGC GTGTGAAACAGAACTGGCTCGCCCCCTACGTCGTAAAGGAAGCCTCTATC TTGTATTCCTGCTTCTGGAATGGAAGTACCCACTCTACCATACATACATA CCAGGTACTCTGCTGCTGTCATATACCGAGGCGACGGGATTAGACGATAC GTTCCAGAGAAAAAAAAAGAGCTATCATACCATAATGTGATCTTTGCTCC AGGCGACCGTTGTCAGCGCTGAACTGCAACTCAATTAGGTGGACCGACTA CTGTCTTCGATCGAGATTAGCCAGGGCGTGCGTTGTAAGTTCCTTCGTAT TCTGTTTGACCTCGCAGAAACGGTGTACGGGCTGGGGGCAAACGCTCTCT CCGAGGAGGCTGTGCTCAAGATATTCCAGGTGGGGTTTCCAACTGCAAGA AAAGCTGTCGTGGCATCAGTACTCCTCAGTACGACGAGCATGAGTCTCAG AATCTCAGCATTCGAAACATTTCTAGTAATTTCCGAGGAGCCTCTACTGT ACCGAGGGATAGCATATTTGACGACAAGGCAGCGTAAACAATACCTAATA CTCTGCATCGAGGTGCTCGTAGGAAACAAACGCACATCCGCAGTCAGCGA TGACGGCATAGCGCCGCGCGATGACTATTTGGACTGGAATGATATCATGC TCGTCTGTGCACAACCCATTTGAACCGAGACACCGAAAACACCCGCTCTC TCTGACCAGACGGTAGCAGTCGCGTAGAGCAACACCTACTCTAAACGCAA GGTTTGCAATATCTACTCTTGCGCCACCTAGTCTCTCTTGACAACCTCCC TCTCCTGTAAAAATTCCACGATATATCCGCGCGTTGTTGCTGCACGACAG GCTAAGCAGCGACCATTGACGGACCCCCTGATCGTTCACGTTCCCGACAC GGCCAGTGCCCTAGCCATGGTGGACTTCGAGGCTGAGGGCGGCGGGGGGC AAAAAGCGCGCCGGCTGCTTGATCTTCTTGGCGAGAAGCTTTGGCCTGGT GAGCTGCCGAACGAACGTTGGCAGGAGGGAGCAAGAAGAGCACGAGTTAA AATTTGAAATCTAGATGGATATCCTGGAGATCAATCTTACATGATGTCCT TGCGTGTCAGCTAGCTGGTGGTGATACGTCCCCCCCAAAGGCTCCAACAG CGCACCCTGTTAGCAATAAGTGCGGTACGAAACGGAAAGCTAGAGTCGAA TCCGCTGCTTATTTGCTGCGTATTCTGGCGTACCACAGAATCTTCAAGCC CAACTTCGAGTTTTTTGCTGCACAGAGGAAGACGCTTTGAGGTACAACTC CTTTTATTTTTCCTACGCTTGGGCAACATTAAGTTGTACTTCGTATCCAA CAGCGGAGGATCTTGAAAGTTGAAAAAAAACTTTCATTTGCCCTTCTGTG ACTTGGGGTGGGATTTTTTGTTCACTGAAATTGTTTATTTTTTCCATATT CTTTTTGAAGCCCGGTCCATTCGGGCTTGTGCCCGAACACGCCAGGGACT TCGCGTAGGCAAGCTTGTTCACCTACACTGCTACCACTGCTGCTGTATGG ACATCGTATAGTTGTATCATTATGTGTACGCACGTGATGGGCAGGGTCGC ACACAGCAGGAGCAGCAGTAATAATGCTTCAAAGCTAATCTACTCACTGA GCTATGACAGCAGCATGTATGATACGCCGAAGTGCATCACTTATTTCGCT TGACACACACCACACCCTATATCTGTACAACGCGCAGCAACCCGACAGCA GCGCAGTCCATCTACTAGTAAACACACCATCAATCATGACCACGGCAGCA ATGATTCGCACCTAGCACCCAGCAGCAGCAACCAACCCTATCGTTATGAT GACATAAAGAGGTGTAGGCCCGCTACTGCTGCTACAGTGCCCCTTCCGAG ATTGACAACATCAAGAGTGAGGGCTACAGTGGGAAAAGATGCGCTAAAAA ATGCGCTAAAAAAATGCGCTATTCCTGAATCTTCCTGGGCTGAGTGGGGT ATGGGGAAGGGAGGCCTGTGCTGAAATGCCGTCATTCCGTGATATTTGAG AGCAAAAGGCGGAATCGCCATCACCGGATAACCCTTCTAGTCTATCCAGG GATGCTACCAGCCTATGGAAAGACCTCGTTAGGGGCCCTTGCTGTATGTC CGTGAGGTGCTCGTATGTCAATTTTCTCTCGGTGTGCTCACAGCAGCTAA TTTTTGTCTGGTTCTCGGGAGAACATAGATGGTTCTGGTTTGGAACCGGG GGTATCCGTGTGAAAAGGCACAAAATGGCCTGGTCCCAGAGGGGTTGAGA AAGTACTGTGGACGACATGAACCAAAAAATGGCCTACACGTATTTATTTT TTCAAGATCGGAACTTCATTGTATTGGCCCACACAGAGCACCACGGTCCA TCATGCGCGGGGGGGGCGTGCGAATGCCGCGAAGCACTTTTTATCCTTAA GCAGACGCCCAGAAACCAAAACACATCAGGACACATCTAATGTTGTGCAC ATTCTTGGGCGGGAGGTCGAACGTGCCGATGTAGTTTTCCACAATCTTCG CGTTGAGCTTGTCGTCCACCCCAAGAGCTCTGAGCCAGTCATGATACATT ACCGAAGCCCTCTCTGCAACACACTGAAGGCGGAAATGTCGTCGTACTAA GAGGGTTTAAAGTGGGTTCATGCGGAGATTTCAAGCTAATACGAAACTCC TTGTGCTACCTTGGGTGTTCTAATTTACTACTGCTGTTGTACGGTATTCT TATGGTCACACTCGATCAAATTGGGACCAAGGAGGTACCAGCATTGCTAC AAGTCCTCTGAAGCGATGAAAACTGGCGACCAGTTTGAGAGTACTGCTGT GATATGTGTATATGTATGTCTGTTGTCATCCCATATATTGTAGACACCAA ATATATTGCGTTAGATTATTGTCCATGCATGTATTACAGCATGCCAGGTA ACGCCATCCGCTGGGGTAAAAACTGAAGGAAGGTCGCAGAGGAGGCTCTT TCTTCTTTTTGCGCGCAATCTTAGTGCTATCTTGGTGGCTGAAGCTAGTG TTTGGGGCATTGTCTGGCATGACGCAATGGCTCAGTCTTCGCAACGAGAT AGGTAGGGATACATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCG CTCTCTGTCACGTCTCCCAACTTCTTCCCTATAGGGCGATTGGTAGTTTC AACCAAGCGTGATGTGAGTACCCACTATTGTATAAACCACATTTTTGTCC AAGCGTGCGTCGAAGGACACCAGCAGGATACAGTAGAATAGACAGATTCT GCCATGTACCACCATCACCACGGTCCGTTTGCATGCAGCAGAAATAACAA ACGTTGTCGGGCTGCCGTAGTTCTTGAAATGCTGCATCGCCTCACGAAGA AAGGCTTCATGATATTGCGTCGCCCAGCACCGGCGCGGTCCAAACATTGT GGTACCGCCGAATACAACACTACCCTCGTGCGGCTGTGAATTTCTCTCTC TTTCTTCCTCTCTTTCTCTGGCTGTTGTGGTGTGCTTGCGTCGGGAGGGT ACGATGGACGGATAGGGTAGTCAAGAGCAGAAACTGTGAAATTTTGTACC AGAGTATTTGCGATTTCTCGTACGCGCCGAACACGGAAACCCTCCTGGGA AATGCTTGCAACTTGACTGGGATGGTCCAGAGTTTCCACGTTCCGACGTG ACCCCCAAAATTCTTCTTGGAAACTCCTTCACCATTTTGTGTTTTGTGAA ACTTTCCTGATGCCACGCGATGTTCTCAAGAAATATTTGTCTGCAGATAT CGCCGTTGAAGATTAATTTAACTCGGTGGAAACGATAGCACATCATATTT TACTTCGTACCCGAAGTATTGTTTTTATGATTCCAGTCAACACACCGGTA TCCACGGAAACCGCGGCGTTCGCAGTTCATTAACTCTATAAATTCAGTTT TTCATACTTGAAGTTTCGGCCACCGCGTGCGAGGATACGATTGCTCGCCA AAAAATCGCGTTTTTTCACCTTCTCACGAAGCACTTGCGTCGTCCCGGGC GCCGGGCTTTGAGTTCCATGCGCTTTCGGGCGCTCCAGGCACCTTACGGG CTCGTTGTAACCAGAATAAGACAGCCCGTGCGCCCTAGTCCAGTTGTATT AGCCTTTTTCGGGGCTCCTGCCACACGCCCTCCTGCTACTGAAGCGGGAC GGGACGTTTGTGGCCAACATGATGCGGTCACGGTTCCGCCGCCAATATTG CAACGACGCGCTACACCAATCGATCTCGCGTCCATCGTCAGCATGTCATA TTGCCGCAGTGTGCCGGGAGGTTTGCCGATCCGTCACGAGAGGGTTACCG CACAGCAGTCTTAAGCTGCTTGCGGAGCACCAGCGTTTCAACTCCTCGGG GTCAGCGCCACACCGCGAAAACTTCGTGGTTCATGTCATGACATTAACAT TATTCGAAAGCACACGCACAACAAGTTGTGCGCTGCTAAGAAGGCTGGTA TGTAAGAAGTTCTTCAAGGCTGTATTTGCAGTCTCCAACAACGTCATCTA CGCTGCCAAGGGAGCAGGTTGTCAAGACCCCCTTCGTCGTCTCCGTCGTT TCAGAGGTCGTTGCGACGGCAGGGAGGCTTTCGTCTAGCCAGGGGGAGGG GGAGAGGGGGTGTTGTTTTGTTATTGTTTTCCCTTGTAGGCCGACGAGGT GGCGCACGAGTGTGTTGGAGCGCCCTTTCATCGCCACCTTGATTTCATGA TTGATTATTTCGCCGTTGTGTACAAGAAAGCTAATGTTGCTGTTTATTTT TACTGTTCATATCCTGATATGTTTTGATTTCTGGGTCTCTGTACTGAGAG AAAAAGGATTTCTCGCCCCTTGCACACTGCGCCCGATGGGCCGTGGTCCG CTGTTCGTGCCAATACAACCACATGCGGACTTTTAAAACATACGAAGTAC TTCGTAAACGTTTCGGCCCTTTTTGGTCAATATCGGCCGAATTATCTTTC CAGTATTTTTATTCTCAACTATCGAAATCATCGTTGCAAGGATATCGTTG GGTCGCTCTGCTTCCAAGATGCGTAGGCAGACAATCACTTTCAAGTCTTT TGTCCATATTCCGTCTGGCCCGTCTGTTTCTTTGTCCTCCCCGTGCTGTT GGTGGTATTTCAACCAGGCCCGCTGACGTTGATTCTAAAGGCCGCTGAGA CTGTGCCGTTGTGTATCACTGCGGGCACCGGTTTCGTAGGCGTTCGCTGC CCCGCGCACCCCGTGACGCGACAGCTTTTGTCGCTGGCCGGCGTACCCGT AGCAGCTCCAAGCGCCAACCGCTTCGGCCATGTCAGGTATTCGATCCACC GCTGTATTTGCCCGTGTTGCGCTTTAACTATGCCGCAGGCTATTTGTCTT GCATGCGTTCTACGCGTAGGGTCTTCTTCGTGTATGACGTCAGTCAGCAT GTAGACTGTGCACTGCGTATTGTTTTGCACACGATGGCTTTTAAGGTGGA ACTTCAGGTGTGTTGTAAGCGTCTATTCTGACGGGTTTGCGCCCTCTTTC GACCAAATCGGGACCAAGTTGTGAGGGTGTGGTTAGGCTCGAATCATGAT CTTGAAAACGCCCGCAAGCAACCCCAGCAGTAATTGCCGGTACCATCGCT ACCGTCTGTTGAAACGTATTTGTTTTGTGATTCCCCCCCATCACACACTC AGTCCCACGCAAGCGGCGCATGTCATGGAAGATCTGGGTGGTAGCGACAT CCTTATCTTGGACGGTGACGCGTCTGGGGCTTGTGGTCTGGGCATCGAAT CAACCGTCGCGAAGATAGACGTCGAAAACAATCAAATCTTGATCCTGAGA ATGGGCGGCGTGACTCAGGACCGAATACGAGAAGCTCTCAAAGAGGGAGG GGAGGATTTTTCTGGGATAAGCGTGCACGCCGGGTCGGTTGCGGGTGGGA AAACGGAAGTACGCATGAAATCGCAGCAAGAAGGGGGGCAAACAGCGTCG TCATTAACAGAGCCGGCGAAGGCCGAGGGGCAAGCACCAGGTGAGACGCT ATTTGCTCATTGTTCGCGTAGGTTCAGCCTCGAGTGAGGCAGTAGTGTAC CGTGCTTGCTTGACAATGGCAACACGCTCCGTGACGTGACATTGTAGATC GTTTTTTTGGTGCCCTTCTTAGCACGCGTAGGTTGTCCACGCTGCTCCCT TTACCTCCCCACTGTACCTCGTGTAAGCACTCACAATAGCCACATGTGCA CTTGACTCTCCGACGGAACTATCAGTATAGCGAGGGCGGTTCTACGACAG AGTCGATGAGGGTAGCGTCGGCCGATGAGAACCTTGCCCCTTTCACCCCT TCGCGTTTTACGTGTATCGCGTTCTTTCATGTATGCCTGCTGTTTTGTGA CGGCAGGGCAGCTCTTACGACACTATTCTCCAGACCTGGAAGTGTTTCGG GTGTTGGGGGCAACATCGAGCAGCACTAGCGGCCGCATCGATGGAGTTGG GGAGCTTGCCGATCTCGTGGACATGGCGAGGTGGGTTATCCACTGCAGTA TTGCCGAGTATCGGCTGGAAATCTGCTGGCGAGTACTTTTTATGGCAATC GCCTCATGAAAGTGATAACTCGCATCACCGCTATTGTATTTATGGCGGCG GCGGTATGGTTTCTGCAGTGTTTGTTCCCGCACAGTGATGGATAATCAAG GGTACCTACTGGTTTGTTGCGATGTCCCTGGTTTGCTACGCGCCCCGGCG GCTTTGCTGCACACCTCGGTGTGGCCTCTTTTGCACTGCTCATCGGTGAC CGCTTGCGTTCGCGATATGTCATCTGTGCTTGAGAGCTCTCGTCGTCGAT CTCCGCTCCCCCCGTCGCTCTGTGTGGGCGGGATGCACGCAGGACAAGCG TTGTCGTTGACTTCGCCGGGCAGCTGATTGGACTGCAAGCGTCTGCTTTG GCGTACTCCGATCTGTCTGTCGAAGGGAATGCGGACGAGGCCGCGGAAGG GCTGTTTCGCGCGCTCAGATGGGCAGAAACACAGCCGTCGGCGCAGCGAC TCCTCATCGCGGGTGCGTGCTATTGAGGGAAGTAATTTGTAGGCACATGT GTTGATGGTCGCTAGTGGTGTAGCGGGAACGGAATCCTTGGCTGCTCGCC AACGCATCTTGTTAGCACCTGAAACGGTCTGCGGACGGGCGTCAGTTTTG CAGACGGGAACGCCTCTCTCTGTTGCATTTTTTATTTTGTCTTATTACAC AACTAATAATGCGTAACCCTCGACACAAACGAGGCTGCCGCTGGTGACAT GTCCTTTTTTCTGCGACTTTGAACAGGCCTTCCGAGCACAAGCAGCGGCG ACTTGGCGGCTGCAGTGAATGATCGAATATATCGCTCCGCATCTGGGAAG ACCATCTCCGCCAAGTGA
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig18:474505..482972+

>mRNA_P-littoralis_Contig18.99.1 ID=mRNA_P-littoralis_Contig18.99.1|Name=mRNA_P-littoralis_Contig18.99.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1635bp|location=Sequence derived from alignment at P-littoralis_Contig18:474505..482972+ (Pylaiella littoralis U1_48)
AGAGCACAGTTCAATCAGTCCACAGGTTGCTCTCTCTTGATGAATCGTGA
GCAACTTTCGACTATCGTGCTTATCGTGCTCTTCTGTGGTCGCACGGGAG
CTCTGTCTATGCTTGTAAGCTTGTCAGCGCTCAGGACGTATCCCTTTTCT
CGTGCGGCTTTCTCGAGGGTTATCCTACTCGTGAGGTCACACCACGGCTC
ACAGAGACGAATCGAGTTGACACCACGACGTCAACCGCCCGTGGCGTTGA
GAAGAGGAGGCCTAGCTTTGGCAATGTCGATGACGGCGAGAGCCTCGTCG
TCATCCTTGGAAGGTATTCAGCAAAGCTGCGAGGGTAGAGGTATCCCTGG
ACCTTCATCGCCACTACAGGTAGAAGCAGACGGCGCCACAACCGCCGTTG
AAACACCTGGTCCTGTGTTGGCGCGTGTGGCGCCTGCCGAGGAACCATGG
CTGACTGAAGCCGGCGCCCGTCTTCGTGCGGGCAAACTCGTGGCTTTTCC
CACAGAAACGGTGTACGGGCTGGGGGCAAACGCTCTCTCCGAGGAGGCTG
TGCTCAAGATATTCCAGGCTAAGCAGCGACCATTGACGGACCCCCTGATC
GTTCACGTTCCCGACACGGCCAGTGCCCTAGCCATGGTGGACTTCGAGGC
TGAGGGCGGCGGGGGGCAAAAAGCGCGCCGGCTGCTTGATCTTCTTGGCG
AGAAGCTTTGGCCTGGCCCGCTGACGTTGATTCTAAAGGCCGCTGAGACT
GTGCCGTTGTGTATCACTGCGGGCACCGGTTTCGTAGGCGTTCGCTGCCC
CGCGCACCCCGTGACGCGACAGCTTTTGTCGCTGGCCGGCGTACCCGTAG
CAGCTCCAAGCGCCAACCGCTTCGGCCATGTCAGTCCCACGCAAGCGGCG
CATGTCATGGAAGATCTGGGTGGTAGCGACATCCTTATCTTGGACGGTGA
CGCGTCTGGGGCTTGTGGTCTGGGCATCGAATCAACCGTCGCGAAGATAG
ACGTCGAAAACAATCAAATCTTGATCCTGAGAATGGGCGGCGTGACTCAG
GACCGAATACGAGAAGCTCTCAAAGAGGGAGGGGAGGATTTTTCTGGGAT
AAGCGTGCACGCCGGGTCGGTTGCGGGTGGGAAAACGGAAGTACGCATGA
AATCGCAGCAAGAAGGGGGGCAAACAGCGTCGTCATTAACAGAGCCGGCG
AAGGCCGAGGGGCAAGCACCAGGTGAGACGCTATTTGCTCATTGTTCGCG
GCAGCTCTTACGACACTATTCTCCAGACCTGGAAGTGTTTCGGGTGTTGG
GGGCAACATCGAGCAGCACTAGCGGCCGCATCGATGGAGTTGGGGAGCTT
GCCGATCTCGTGGACATGGCGAGGACAAGCGTTGTCGTTGACTTCGCCGG
GCAGCTGATTGGACTGCAAGCGTCTGCTTTGGCGTACTCCGATCTGTCTG
TCGAAGGGAATGCGGACGAGGCCGCGGAAGGGCTGTTTCGCGCGCTCAGA
TGGGCAGAAACACAGCCGTCGGCGCAGCGACTCCTCATCGCGGGCCTTCC
GAGCACAAGCAGCGGCGACTTGGCGGCTGCAGTGAATGATCGAATATATC
GCTCCGCATCTGGGAAGACCATCTCCGCCAAGTGA
back to top