mRNA_P-littoralis_Contig18.49.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig18.49.1
Unique NamemRNA_P-littoralis_Contig18.49.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig18.49.1 vs. uniprot
Match: A0A6H5KN27_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN27_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 7.370e-15
Identity = 40/62 (64.52%), Postives = 45/62 (72.58%), Query Frame = 1 
Query:    1 GSNLVCTVVWLALARLFDMFGGP-TALYIDVLLLSLDNCVGENKNNIVMAFLGCLVLMGVVG 183
            GSNLVCT +WLAL RL  M+  P    YI  L L LDNCVGENKNNIV+AF+G LV  GV+G
Sbjct:   10 GSNLVCTALWLALKRLSAMWTKPGQRFYIKRLHLQLDNCVGENKNNIVLAFIGGLVAAGVIG 71
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BLAST of mRNA_P-littoralis_Contig18.49.1 vs. uniprot
Match: A0A6H5KK38_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK38_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 7.660e-15
Identity = 40/62 (64.52%), Postives = 46/62 (74.19%), Query Frame = 1 
Query:    1 GSNLVCTVVWLALARLFDMFGGP-TALYIDVLLLSLDNCVGENKNNIVMAFLGCLVLMGVVG 183
            GSNLVCT +WLAL RL +M+  P    +I  L L LDNCVGENKNNIVMAF+G LV  GV+G
Sbjct:  237 GSNLVCTALWLALKRLSEMWNKPGERFHIKRLHLQLDNCVGENKNNIVMAFIGGLVAAGVIG 298
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BLAST of mRNA_P-littoralis_Contig18.49.1 vs. uniprot
Match: A0A6H5KAY2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAY2_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 2.580e-14
Identity = 40/62 (64.52%), Postives = 45/62 (72.58%), Query Frame = 1 
Query:    1 GSNLVCTVVWLALARLFDMFGGP-TALYIDVLLLSLDNCVGENKNNIVMAFLGCLVLMGVVG 183
            GSNLVCT +WLAL RL  M+  P    YI  L L LDNCVGENKNNIV+AF+G LV  GV+G
Sbjct:   10 GSNLVCTALWLALKRLSAMWTKPGQRFYIKRLHLQLDNCVGENKNNIVLAFIGGLVAAGVIG 71
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BLAST of mRNA_P-littoralis_Contig18.49.1 vs. uniprot
Match: A0A6H5KA02_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA02_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 9.280e-14
Identity = 40/62 (64.52%), Postives = 44/62 (70.97%), Query Frame = 1 
Query:    1 GSNLVCTVVWLALARLFDMFGGP-TALYIDVLLLSLDNCVGENKNNIVMAFLGCLVLMGVVG 183
            GSNLVCT +WLAL RL  M   P    YI  L L LDNCVGENKNNIV+AF+G LV  GV+G
Sbjct:  122 GSNLVCTALWLALKRLSAMGTKPGQRFYIKRLHLQLDNCVGENKNNIVLAFIGGLVAAGVIG 183
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BLAST of mRNA_P-littoralis_Contig18.49.1 vs. uniprot
Match: A0A6H5JAR9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAR9_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 2.070e-12
Identity = 38/62 (61.29%), Postives = 43/62 (69.35%), Query Frame = 1 
Query:    1 GSNLVCTVVWLALARLFDMFGGP-TALYIDVLLLSLDNCVGENKNNIVMAFLGCLVLMGVVG 183
            GSNL CT +WLAL RL  M+  P    +I    L LDNCVGENKNNIVMAF+G LV  GV+G
Sbjct:   10 GSNLECTTLWLALKRLSAMWTKPGERFHIKRRHLQLDNCVGENKNNIVMAFIGGLVAAGVIG 71
[Close]
BLAST of mRNA_P-littoralis_Contig18.49.1 vs. uniprot
Match: A0A6H5JTH9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTH9_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 3.940e-12
Identity = 38/61 (62.30%), Postives = 42/61 (68.85%), Query Frame = 1 
Query:    1 GSNLVCTVVWLALARLFDMFGGP-TALYIDVLLLSLDNCVGENKNNIVMAFLGCLVLMGVV 180
            GSNLVCT +WLAL RL  M+  P    YI  L L L NCVGE KNNIV+AF+G LV  GVV
Sbjct:  284 GSNLVCTALWLALKRLSAMWAKPGQRFYIKRLHLQLHNCVGEKKNNIVLAFIGGLVAAGVV 344
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig18.49.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5KN27_9PHAE7.370e-1564.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KK38_9PHAE7.660e-1564.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAY2_9PHAE2.580e-1464.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KA02_9PHAE9.280e-1464.52Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JAR9_9PHAE2.070e-1261.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTH9_9PHAE3.940e-1262.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig18contigP-littoralis_Contig18:231717..231906 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size192
Hectar predicted targeting categorysignal peptide
Exons1
Cds size189
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789862.1051123-CDS-P-littoralis_Contig18:231717..2319061680789862.1051123-CDS-P-littoralis_Contig18:231717..231906Pylaiella littoralis U1_48CDSP-littoralis_Contig18 231718..231906 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig18.49.1prot_P-littoralis_Contig18.49.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig18 231718..231906 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig18.49.1

>prot_P-littoralis_Contig18.49.1 ID=prot_P-littoralis_Contig18.49.1|Name=mRNA_P-littoralis_Contig18.49.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=63bp
GSNLVCTVVWLALARLFDMFGGPTALYIDVLLLSLDNCVGENKNNIVMAF
LGCLVLMGVVGRV
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mRNA from alignment at P-littoralis_Contig18:231717..231906-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig18.49.1 ID=mRNA_P-littoralis_Contig18.49.1|Name=mRNA_P-littoralis_Contig18.49.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=190bp|location=Sequence derived from alignment at P-littoralis_Contig18:231717..231906- (Pylaiella littoralis U1_48)
GGGAGTAACCTTGTCTGCACTGTGGTGTGGCTTGCGTTGGCTCGACTGTT
TGACATGTTCGGCGGCCCCACGGCACTGTACATCGACGTGTTGCTTCTAT
CCCTGGACAATTGCGTCGGCGAAAACAAAAACAACATTGTCATGGCCTTC
CTGGGATGCTTGGTGCTGATGGGGGTCGTTGGGAGAGTGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig18:231717..231906-

>mRNA_P-littoralis_Contig18.49.1 ID=mRNA_P-littoralis_Contig18.49.1|Name=mRNA_P-littoralis_Contig18.49.1|organism=Pylaiella littoralis U1_48|type=CDS|length=189bp|location=Sequence derived from alignment at P-littoralis_Contig18:231717..231906- (Pylaiella littoralis U1_48)
GGGAGTAACCTTGTCTGCACTGTGGTGTGGCTTGCGTTGGCTCGACTGTT
TGACATGTTCGGCGGCCCCACGGCACTGTACATCGACGTGTTGCTTCTAT
CCCTGGACAATTGCGTCGGCGAAAACAAAAACAACATTGTCATGGCCTTC
CTGGGATGCTTGGTGCTGATGGGGGTCGTTGGGAGAGTG
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