mRNA_P-littoralis_Contig18.46.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig18.46.1
Unique NamemRNA_P-littoralis_Contig18.46.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig18.46.1 vs. uniprot
Match: A0A6H5JCW3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCW3_9PHAE)

HSP 1 Score: 137 bits (345), Expect = 5.820e-34
Identity = 81/215 (37.67%), Postives = 103/215 (47.91%), Query Frame = 2 
Query:    2 MQVGHTHIKIDQIFSRYG*IPDRN**P*VLLRCCQVTSKL*DTTRLLSFYSFESPPRVDFLPSARCGRLALGVKGLNVFARSEQVAILKSSYKAVPMNASTLRNEGNFKDFLMGRYKMIPSITRWRAFRLLRS-EGNVGVCVKEFMHSRDWSGPTRDGKPRAGTPPHSMFIGSPPNLRGDIPPYELKPVKKETIRFIRMRYEASRERLQSAYPGG 643
            M VGHTH+KIDQIFSR+                                                      G+KG N+F R++   +L++SY  VP+  STL NEGNF   L GR   +P IT +RAFR+ +  +G V V VK  MH  +  G  R+G      PPH +FIG PP ++ D PPYELK V  E IR +  RY AS E L + YP G
Sbjct:   54 MMVGHTHMKIDQIFSRFS----------------------------------------------------RGIKGKNIFTRTQLAEVLQASYTEVPVFCSTLGNEGNFNGLLQGRVNRVPDITTYRAFRVEKGGDGRVKVRVKHHMHGTECKGIGRNGDVDPNAPPHDLFIGHPPRIQ-DAPPYELKEVSDEIIRKVEQRYLASHESLAATYPLG 215
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BLAST of mRNA_P-littoralis_Contig18.46.1 vs. uniprot
Match: A0A6H5KAY2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAY2_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 1.150e-13
Identity = 69/210 (32.86%), Postives = 89/210 (42.38%), Query Frame = 2 
Query:    8 VGHTHIKIDQIFSRYG*IPDRN**P*VLLRCCQVTSKL*DTTRLLSFYSFESPPRVDFLPSARCGRLALG-VKGLNVFARSEQVAILKSSYKAVPMNASTLRNEGNFKDFLMGRYKMIPSITRWRAFRLLRSEGNVGVCVKEFMHSRDWSGPTRDGKPRAGTPPHSMFIGSPPNLRGDIPPYELKPVKKETIRFIRMRYEASRERLQSAY 634
            VGHTHIKIDQ+FSR+            L R     S+L +  R    Y  E P  V  L +       LG  KGL +         L    K                       + I +IT +RAFR+ +  G V V  K FMHS  W G T  G  +    PH +F  + P    ++PP+ELK V    I  I  RY A+R RL++AY
Sbjct:   80 VGHTHIKIDQVFSRFS--------VGTLGRSIFTRSQLGELFR--ESYK-ELPVHVGTLTN-------LGNFKGLYLDDNK-----LXLPLKPTXXXXXXXXXXXXXXXXXXXNLRKIRNITTFRAFRVGKVAGEVSVWAKRFMHSDAWLGLTATGGAQVDANPHRLFRFAAPTF-DNVPPFELKTVDPTVIALIEKRYIATRPRLEAAY 265
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig18.46.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JCW3_9PHAE5.820e-3437.67Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAY2_9PHAE1.150e-1332.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig18contigP-littoralis_Contig18:231025..231706 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size682
Hectar predicted targeting categoryother localisation
Exons1
Cds size363
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789862.049115-UTR-P-littoralis_Contig18:231024..2310541680789862.049115-UTR-P-littoralis_Contig18:231024..231054Pylaiella littoralis U1_48UTRP-littoralis_Contig18 231025..231054 -
1680789862.0740654-UTR-P-littoralis_Contig18:231417..2317061680789862.0740654-UTR-P-littoralis_Contig18:231417..231706Pylaiella littoralis U1_48UTRP-littoralis_Contig18 231418..231706 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789862.062854-CDS-P-littoralis_Contig18:231054..2314171680789862.062854-CDS-P-littoralis_Contig18:231054..231417Pylaiella littoralis U1_48CDSP-littoralis_Contig18 231055..231417 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig18.46.1prot_P-littoralis_Contig18.46.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig18 231055..231417 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig18.46.1

>prot_P-littoralis_Contig18.46.1 ID=prot_P-littoralis_Contig18.46.1|Name=mRNA_P-littoralis_Contig18.46.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=121bp
MNASTLRNEGNFKDFLMGRYKMIPSITRWRAFRLLRSEGNVGVCVKEFMH
SRDWSGPTRDGKPRAGTPPHSMFIGSPPNLRGDIPPYELKPVKKETIRFI
RMRYEASRERLQSAYPGGKC*
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mRNA from alignment at P-littoralis_Contig18:231025..231706-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig18.46.1 ID=mRNA_P-littoralis_Contig18.46.1|Name=mRNA_P-littoralis_Contig18.46.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=682bp|location=Sequence derived from alignment at P-littoralis_Contig18:231025..231706- (Pylaiella littoralis U1_48)
CATGCAAGTTGGACACACACACATAAAAATCGATCAGATTTTTTCCAGGT
ACGGATAGATCCCTGATCGAAATTGATAACCCTAAGTGCTGCTTCGTTGC
TGTCAAGTCACATCAAAACTGTAGGATACCACACGTTTGCTTTCGTTCTA
TTCCTTCGAGAGCCCTCCTAGAGTTGACTTCCTTCCGTCCGCTCGGTGTG
GCAGGTTGGCCCTGGGTGTGAAAGGTCTCAACGTTTTCGCGAGGAGTGAG
CAGGTGGCAATACTCAAATCTTCGTATAAAGCAGTTCCCATGAACGCTTC
CACGCTTCGGAACGAGGGCAATTTCAAGGATTTTCTCATGGGGCGGTACA
AAATGATTCCAAGCATCACGCGATGGCGGGCATTCCGGTTGCTGCGTTCG
GAAGGCAACGTTGGCGTCTGCGTAAAAGAATTCATGCATTCACGCGATTG
GTCTGGGCCGACTCGTGACGGAAAGCCCAGGGCGGGCACTCCTCCGCACA
GTATGTTCATCGGGTCGCCGCCCAATCTTCGTGGCGACATCCCCCCGTAC
GAGCTGAAACCTGTCAAGAAAGAAACCATTCGATTCATACGCATGCGGTA
TGAAGCCTCCCGAGAACGCCTTCAGTCAGCATACCCAGGTGGTAAGTGTT
GAAGTTTTAGCATTAAGTAGGCTACCCCCCTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig18:231025..231706-

>mRNA_P-littoralis_Contig18.46.1 ID=mRNA_P-littoralis_Contig18.46.1|Name=mRNA_P-littoralis_Contig18.46.1|organism=Pylaiella littoralis U1_48|type=CDS|length=363bp|location=Sequence derived from alignment at P-littoralis_Contig18:231025..231706- (Pylaiella littoralis U1_48)
ATGAACGCTTCCACGCTTCGGAACGAGGGCAATTTCAAGGATTTTCTCAT
GGGGCGGTACAAAATGATTCCAAGCATCACGCGATGGCGGGCATTCCGGT
TGCTGCGTTCGGAAGGCAACGTTGGCGTCTGCGTAAAAGAATTCATGCAT
TCACGCGATTGGTCTGGGCCGACTCGTGACGGAAAGCCCAGGGCGGGCAC
TCCTCCGCACAGTATGTTCATCGGGTCGCCGCCCAATCTTCGTGGCGACA
TCCCCCCGTACGAGCTGAAACCTGTCAAGAAAGAAACCATTCGATTCATA
CGCATGCGGTATGAAGCCTCCCGAGAACGCCTTCAGTCAGCATACCCAGG
TGGTAAGTGTTGA
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