mRNA_P-littoralis_Contig18.38.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig18.38.1
Unique NamemRNA_P-littoralis_Contig18.38.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig18.38.1 vs. uniprot
Match: D7FZI2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZI2_ECTSI)

HSP 1 Score: 75.1 bits (183), Expect = 2.100e-13
Identity = 48/100 (48.00%), Postives = 60/100 (60.00%), Query Frame = 1 
Query:   22 AHIRAGGGTTRNPTARMAKRRSQQGDRHRGVHGFSRMNSNKNARKEGPDLAGS--RCKLMLSVTDEERRMSANARSKGFVEIVPCPRVVEVEHLVFPKVL 315
            AHIRAG GT RNPTA  AK RS +GD +RG+HG SR N N+NAR  G D   S  R ++ML+VT      +  +RS+     V CPR + VE L    V+
Sbjct:  917 AHIRAGLGTLRNPTAAQAKERSVRGDLNRGLHGGSRANFNRNARS-GDDFNVSDYRGRIMLAVTQAVAAENVRSRSRNSPNAVLCPRYISVEPLAATPVV 1015
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BLAST of mRNA_P-littoralis_Contig18.38.1 vs. uniprot
Match: A0A6H5KB63_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB63_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 4.210e-10
Identity = 38/85 (44.71%), Postives = 50/85 (58.82%), Query Frame = 1 
Query:   43 GTTRNPTARMAKRRSQQGDRHRGVHGFSRMNSNKNARKEGPDL--AGSRCKLMLSVTDEERRMSANARSKGFVEIVPCPRVVEVE 291
            G+  NP A  AK R+ +GD  R +HG SR N NKNARK G D   +G R ++ML VTD ER  +  A S+  V  V  PR + ++
Sbjct:    6 GSHSNPIAAQAKERTARGDLQRSLHGVSRANHNKNARK-GEDFIASGIRGRIMLPVTDAERSATMRAPSRNPVSAVMFPRYISID 89
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig18.38.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FZI2_ECTSI2.100e-1348.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KB63_9PHAE4.210e-1044.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig18contigP-littoralis_Contig18:190417..190761 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size346
Hectar predicted targeting categoryother localisation
Exons1
Cds size345
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789861.680219-CDS-P-littoralis_Contig18:190416..1907611680789861.680219-CDS-P-littoralis_Contig18:190416..190761Pylaiella littoralis U1_48CDSP-littoralis_Contig18 190417..190761 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig18.38.1prot_P-littoralis_Contig18.38.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig18 190417..190761 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig18.38.1

>prot_P-littoralis_Contig18.38.1 ID=prot_P-littoralis_Contig18.38.1|Name=mRNA_P-littoralis_Contig18.38.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=115bp
DICEQRFAHIRAGGGTTRNPTARMAKRRSQQGDRHRGVHGFSRMNSNKNA
RKEGPDLAGSRCKLMLSVTDEERRMSANARSKGFVEIVPCPRVVEVEHLV
FPKVLGKRNAPVSNP
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mRNA from alignment at P-littoralis_Contig18:190417..190761+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig18.38.1 ID=mRNA_P-littoralis_Contig18.38.1|Name=mRNA_P-littoralis_Contig18.38.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=345bp|location=Sequence derived from alignment at P-littoralis_Contig18:190417..190761+ (Pylaiella littoralis U1_48)
GATATATGCGAGCAACGGTTTGCTCACATCCGTGCAGGGGGCGGGACCAC
GAGGAACCCCACCGCGCGCATGGCCAAAAGGAGGTCGCAACAGGGCGACC
GACACCGAGGAGTGCACGGGTTTTCTCGGATGAACTCCAACAAGAACGCC
CGCAAGGAGGGACCTGACCTGGCAGGCTCCCGATGCAAGCTCATGTTGTC
TGTCACAGATGAAGAGCGACGGATGTCTGCTAACGCGAGATCAAAAGGAT
TTGTTGAAATAGTTCCGTGCCCTCGCGTTGTTGAAGTCGAACACCTAGTG
TTTCCCAAGGTACTAGGGAAGAGAAACGCCCCCGTTAGCAACCCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig18:190417..190761+

>mRNA_P-littoralis_Contig18.38.1 ID=mRNA_P-littoralis_Contig18.38.1|Name=mRNA_P-littoralis_Contig18.38.1|organism=Pylaiella littoralis U1_48|type=CDS|length=345bp|location=Sequence derived from alignment at P-littoralis_Contig18:190417..190761+ (Pylaiella littoralis U1_48)
GATATATGCGAGCAACGGTTTGCTCACATCCGTGCAGGGGGCGGGACCAC
GAGGAACCCCACCGCGCGCATGGCCAAAAGGAGGTCGCAACAGGGCGACC
GACACCGAGGAGTGCACGGGTTTTCTCGGATGAACTCCAACAAGAACGCC
CGCAAGGAGGGACCTGACCTGGCAGGCTCCCGATGCAAGCTCATGTTGTC
TGTCACAGATGAAGAGCGACGGATGTCTGCTAACGCGAGATCAAAAGGAT
TTGTTGAAATAGTTCCGTGCCCTCGCGTTGTTGAAGTCGAACACCTAGTG
TTTCCCAAGGTACTAGGGAAGAGAAACGCCCCCGTTAGCAACCCC
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