mRNA_P-littoralis_Contig18.22.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig18.22.1
Unique NamemRNA_P-littoralis_Contig18.22.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig18.22.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig18contigP-littoralis_Contig18:139511..140107 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size162
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size156
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789861.4908073-UTR-P-littoralis_Contig18:139510..1395141680789861.4908073-UTR-P-littoralis_Contig18:139510..139514Pylaiella littoralis U1_48UTRP-littoralis_Contig18 139511..139514 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789861.5059247-CDS-P-littoralis_Contig18:139514..1395921680789861.5059247-CDS-P-littoralis_Contig18:139514..139592Pylaiella littoralis U1_48CDSP-littoralis_Contig18 139515..139592 +
1680789861.5161889-CDS-P-littoralis_Contig18:140029..1401071680789861.5161889-CDS-P-littoralis_Contig18:140029..140107Pylaiella littoralis U1_48CDSP-littoralis_Contig18 140030..140107 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig18.22.1prot_P-littoralis_Contig18.22.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig18 139515..140107 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig18.22.1

>prot_P-littoralis_Contig18.22.1 ID=prot_P-littoralis_Contig18.22.1|Name=mRNA_P-littoralis_Contig18.22.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=52bp
MERVAFCTKEFPGRHTAEKIEPWLRQVTVDAFGGIVGAEHCEPSNIYISA
TV
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mRNA from alignment at P-littoralis_Contig18:139511..140107+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig18.22.1 ID=mRNA_P-littoralis_Contig18.22.1|Name=mRNA_P-littoralis_Contig18.22.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=597bp|location=Sequence derived from alignment at P-littoralis_Contig18:139511..140107+ (Pylaiella littoralis U1_48)
TGGTATGGAGCGTGTGGCGTTCTGCACGAAGGAGTTCCCCGGAAGGCATA
CTGCAGAGAAGATCGAGCCATGGCTTCGACAGGTGACACTCCATGTTATT
TTTTAGGGCTGTGGTGTAATTCTTTGATTTTTTGTTGTTGTTTTCAATAC
GTTGTTTTTGGTGTATGTATCCACCACGCTGTGTGTCCTTGCCTCTACCT
TCCAAAAACAAAACACGCATTTGGTAAGCTACAAACAAGTCAGGTGTTCG
GCTCAACAACATCGTGTTCGGGTTCGTTTTTGCAAGTTTATTGGTGGCGC
ACACATAATGTTGCTCTCTGGGTAGGTTTCATGTGGTGGTGAGTCCGAAC
AACAATGGAGGGAGCGGATAGAGCGTTGCTGTGTCGGCGTGCATGTATTC
GATTTGATGTGTGCGTGTTAGTATTTCGTATTTCTCTTTTGGCCGTGTCT
GTCGCGAGTGTTGAAAGAAAAACAACTGCACTCCCACATTCTTCACCTCT
GCTCGCCGTGCGTGAACAGGTTACCGTTGACGCTTTTGGCGGTATCGTAG
GAGCCGAGCACTGCGAGCCATCAAACATCTACATCTCTGCCACGGTC
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Coding sequence (CDS) from alignment at P-littoralis_Contig18:139511..140107+

>mRNA_P-littoralis_Contig18.22.1 ID=mRNA_P-littoralis_Contig18.22.1|Name=mRNA_P-littoralis_Contig18.22.1|organism=Pylaiella littoralis U1_48|type=CDS|length=156bp|location=Sequence derived from alignment at P-littoralis_Contig18:139511..140107+ (Pylaiella littoralis U1_48)
ATGGAGCGTGTGGCGTTCTGCACGAAGGAGTTCCCCGGAAGGCATACTGC
AGAGAAGATCGAGCCATGGCTTCGACAGGTTACCGTTGACGCTTTTGGCG
GTATCGTAGGAGCCGAGCACTGCGAGCCATCAAACATCTACATCTCTGCC
ACGGTC
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