mRNA_P-littoralis_Contig18.217.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig18.217.1
Unique NamemRNA_P-littoralis_Contig18.217.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig18.217.1 vs. uniprot
Match: A0A6H5JBJ7_9PHAE (DDE-1 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBJ7_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 3.850e-29
Identity = 51/107 (47.66%), Postives = 74/107 (69.16%), Query Frame = 2 
Query:    8 VRARYTSWIRDNYG--RSGQKVTAPSRGLVATWVKEVWDNISERTIRSCFKVCGLTLNLDGSEDHAWCIYTFGDNYREVLREQREEWEQAH-GIGLEPLQLPVIPTG 319
            +R +YT++        RSG K+  P RG+V+TW K+ W++I+  T+++CFK+CGLTL LDGSEDHAWC + FG++YR++L EQ   W   H  + L PL+LP +P G
Sbjct:   92 LRGKYTAYSASAVADARSG-KLKPPERGVVSTWCKKAWESITPETVKTCFKICGLTLALDGSEDHAWCEHNFGEDYRDLLEEQHAVWLAEHPDVTLPPLKLPKVPGG 197
[Close]
BLAST of mRNA_P-littoralis_Contig18.217.1 vs. uniprot
Match: A0A6H5KE45_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE45_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 6.220e-29
Identity = 49/86 (56.98%), Postives = 62/86 (72.09%), Query Frame = 2 
Query:   62 KVTAPSRGLVATWVKEVWDNISERTIRSCFKVCGLTLNLDGSEDHAWCIYTFGDNYREVLREQREEWEQAH-GIGLEPLQLPVIPT 316
            K+  P RG VATW K  W +I+  T+++CFK+CGLTL LDGSEDHAWC++ FGD YRE+L +QR EW   H  + L PLQLP +P 
Sbjct:  440 KLAPPGRGAVATWCKNAWASITPETVKTCFKICGLTLALDGSEDHAWCLHNFGDGYRELLEQQRVEWLAEHPNVTLPPLQLPKVPA 525
[Close]
BLAST of mRNA_P-littoralis_Contig18.217.1 vs. uniprot
Match: A0A6H5KEE8_9PHAE (DDE-1 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEE8_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 6.540e-29
Identity = 49/86 (56.98%), Postives = 62/86 (72.09%), Query Frame = 2 
Query:   62 KVTAPSRGLVATWVKEVWDNISERTIRSCFKVCGLTLNLDGSEDHAWCIYTFGDNYREVLREQREEWEQAH-GIGLEPLQLPVIPT 316
            K+  P RG VATW K  W +I+  T+++CFK+CGLTL LDGSEDHAWC++ FGD YRE+L +QR EW   H  + L PLQLP +P 
Sbjct:  452 KLAPPGRGAVATWCKNAWASITPETVKTCFKICGLTLALDGSEDHAWCLHNFGDGYRELLEQQRVEWLAEHPNVTLPPLQLPKVPA 537
[Close]
BLAST of mRNA_P-littoralis_Contig18.217.1 vs. uniprot
Match: A0A6H5KVR1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVR1_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 7.560e-29
Identity = 49/86 (56.98%), Postives = 62/86 (72.09%), Query Frame = 2 
Query:   62 KVTAPSRGLVATWVKEVWDNISERTIRSCFKVCGLTLNLDGSEDHAWCIYTFGDNYREVLREQREEWEQAH-GIGLEPLQLPVIPT 316
            K+  P RG VATW K  W +I+  T+++CFK+CGLTL LDGSEDHAWC++ FGD YRE+L +QR EW   H  + L PLQLP +P 
Sbjct:  498 KLAPPGRGAVATWCKNAWASITPETVKTCFKICGLTLALDGSEDHAWCLHNFGDGYRELLEQQRVEWLAEHPNVTLPPLQLPKVPA 583
[Close]
BLAST of mRNA_P-littoralis_Contig18.217.1 vs. uniprot
Match: A0A6H5J8R4_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8R4_9PHAE)

HSP 1 Score: 115 bits (288), Expect = 7.780e-29
Identity = 49/91 (53.85%), Postives = 67/91 (73.63%), Query Frame = 2 
Query:   50 RSGQKVTAPSRGLVATWVKEVWDNISERTIRSCFKVCGLTLNLDGSEDHAWCIYTFGDNYREVLREQREEWEQAH-GIGLEPLQLPVIPTG 319
            RSG K+  P RG+V+TW KE W++I+  T+++CFK+CGLTL LDGSEDHAWC + FG++YR++L EQ   W   H  + L PL+LP +P G
Sbjct:  167 RSG-KLKPPERGIVSTWCKEEWESITPETVKTCFKICGLTLALDGSEDHAWCAHNFGEDYRDLLEEQHAVWLAEHPNVTLPPLKLPKVPGG 256
[Close]
BLAST of mRNA_P-littoralis_Contig18.217.1 vs. uniprot
Match: A0A6H5KRI4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRI4_9PHAE)

HSP 1 Score: 111 bits (277), Expect = 7.960e-29
Identity = 45/93 (48.39%), Postives = 68/93 (73.12%), Query Frame = 2 
Query:   44 YGRSGQKVTAPSRGLVATWVKEVWDNISERTIRSCFKVCGLTLNLDGSEDHAWCIYTFGDNYREVLREQREEWEQAH-GIGLEPLQLPVIPTG 319
            + RSG K+  P RG+V+TW KE W++++  T+++CFK+CGLTL LDG+++HAWC + FG++YR++L EQ   W   H  + L PL+LP +P G
Sbjct:   24 HARSG-KLKPPERGVVSTWCKEAWESVTSETVKTCFKICGLTLALDGNKNHAWCKHNFGEDYRDLLEEQHAVWLAEHPDVTLPPLKLPKVPRG 115
[Close]
BLAST of mRNA_P-littoralis_Contig18.217.1 vs. uniprot
Match: A0A6H5KRZ1_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRZ1_9PHAE)

HSP 1 Score: 117 bits (292), Expect = 2.290e-28
Identity = 49/86 (56.98%), Postives = 61/86 (70.93%), Query Frame = 2 
Query:   62 KVTAPSRGLVATWVKEVWDNISERTIRSCFKVCGLTLNLDGSEDHAWCIYTFGDNYREVLREQREEWEQAH-GIGLEPLQLPVIPT 316
            K+  P RG VATW K  W +I+  T ++CFK+CGLTL LDGSEDHAWC++ FGD YRE+L +QR EW   H  + L PLQLP +P 
Sbjct:  447 KLAPPGRGAVATWCKNAWASITPETAKTCFKICGLTLALDGSEDHAWCLHNFGDGYRELLEQQRVEWLAEHPNVTLPPLQLPKVPA 532
[Close]
BLAST of mRNA_P-littoralis_Contig18.217.1 vs. uniprot
Match: A0A6H5K0T0_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0T0_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 4.280e-28
Identity = 48/106 (45.28%), Postives = 71/106 (66.98%), Query Frame = 2 
Query:    8 VRARYTSWIRDNYGRS-GQKVTAPSRGLVATWVKEVWDNISERTIRSCFKVCGLTLNLDGSEDHAWCIYTFGDNYREVLREQREEWEQAH-GIGLEPLQLPVIPTG 319
            +R +YT++       +   K+  P RG+V+TW KE W++I+ +T+++CFK+CGLTL LDG EDHAWC + FG+N R++L EQ   W   H  + L PL+LP +P G
Sbjct:   48 LRGKYTAYSASAVADALSGKLKPPERGVVSTWCKEAWESITPKTVKTCFKICGLTLALDGREDHAWCEHNFGENCRDLLDEQHAVWLAEHPDVTLPPLKLPKVPGG 153
[Close]
BLAST of mRNA_P-littoralis_Contig18.217.1 vs. uniprot
Match: A0A6H5K8Y4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8Y4_9PHAE)

HSP 1 Score: 116 bits (290), Expect = 5.850e-28
Identity = 48/86 (55.81%), Postives = 61/86 (70.93%), Query Frame = 2 
Query:   62 KVTAPSRGLVATWVKEVWDNISERTIRSCFKVCGLTLNLDGSEDHAWCIYTFGDNYREVLREQREEWEQAH-GIGLEPLQLPVIPT 316
            K+  P RG VATW K  W +I+   +++CFK+CGLTL LDGSEDHAWC++ FGD YRE+L +QR EW   H  + L PLQLP +P 
Sbjct:  585 KLVPPGRGAVATWCKNAWASITPEIVKTCFKICGLTLALDGSEDHAWCLHNFGDGYRELLEQQRVEWLAEHPNVTLPPLQLPKVPA 670
[Close]
BLAST of mRNA_P-littoralis_Contig18.217.1 vs. uniprot
Match: A0A6H5JN68_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN68_9PHAE)

HSP 1 Score: 115 bits (289), Expect = 6.990e-28
Identity = 52/107 (48.60%), Postives = 74/107 (69.16%), Query Frame = 2 
Query:    8 VRARYTSWIRDNYG--RSGQKVTAPSRGLVATWVKEVWDNISERTIRSCFKVCGLTLNLDGSEDHAWCIYTFGDNYREVLREQREEWEQAH-GIGLEPLQLPVIPTG 319
            +R +YT++        RSG K+  P RG+V+TW KE W++I+  T+++CFK+CGLTL LDGSEDHAWC + FG++YR++L EQ   W   H  + L PL+LP +P G
Sbjct:  482 LRGKYTAYSASAVADARSG-KLKPPERGVVSTWCKEAWESITPETVKTCFKICGLTLALDGSEDHAWCEHNFGEDYRDLLEEQHAVWLAEHPDVTLPPLKLPKVPGG 587
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig18.217.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JBJ7_9PHAE3.850e-2947.66DDE-1 domain-containing protein n=2 Tax=Ectocarpus... [more]
A0A6H5KE45_9PHAE6.220e-2956.98DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KEE8_9PHAE6.540e-2956.98DDE-1 domain-containing protein n=2 Tax=Ectocarpus... [more]
A0A6H5KVR1_9PHAE7.560e-2956.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J8R4_9PHAE7.780e-2953.85DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KRI4_9PHAE7.960e-2948.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KRZ1_9PHAE2.290e-2856.98DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5K0T0_9PHAE4.280e-2845.28DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5K8Y4_9PHAE5.850e-2855.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN68_9PHAE6.990e-2848.60DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig18contigP-littoralis_Contig18:917449..917777 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size329
Hectar predicted targeting categoryother localisation
Exons1
Cds size327
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789860.8934484-CDS-P-littoralis_Contig18:917450..9177771680789860.8934484-CDS-P-littoralis_Contig18:917450..917777Pylaiella littoralis U1_48CDSP-littoralis_Contig18 917451..917777 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig18.217.1prot_P-littoralis_Contig18.217.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig18 917451..917777 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig18.217.1

>prot_P-littoralis_Contig18.217.1 ID=prot_P-littoralis_Contig18.217.1|Name=mRNA_P-littoralis_Contig18.217.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=109bp
ARCSGQVHQLDPGQLRALGAEGDRAEQGAGRDVGKGGVGQHLGADHPLVL
QGLRSHPQPRRKRGPRVVHLHVRRQLPRGSSRAARGVGASARHRARTAPA
TGHPYRRRR
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mRNA from alignment at P-littoralis_Contig18:917449..917777-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig18.217.1 ID=mRNA_P-littoralis_Contig18.217.1|Name=mRNA_P-littoralis_Contig18.217.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=329bp|location=Sequence derived from alignment at P-littoralis_Contig18:917449..917777- (Pylaiella littoralis U1_48)
GCGAGGTGTTCGGGCCAGGTACACCAGCTGGATCCGGGACAACTACGGGC
GCTCGGGGCAGAAGGTGACCGCGCCGAGCAGGGGGCTGGTCGCGACGTGG
GTAAAGGAGGTGTGGGACAACATCTCGGAGCGGACCATCCGCTCGTGCTT
CAAGGTCTGCGGTCTCACCCTCAACCTCGACGGAAGCGAGGACCACGCGT
GGTGCATCTACACGTTCGGAGACAACTACCGCGAGGTTCTTCGCGAGCAG
CGCGAGGAGTGGGAGCAAGCGCACGGCATCGGGCTCGAACCGCTCCAGCT
ACCGGTCATCCCTACCGGAGACGGCGTCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig18:917449..917777-

>mRNA_P-littoralis_Contig18.217.1 ID=mRNA_P-littoralis_Contig18.217.1|Name=mRNA_P-littoralis_Contig18.217.1|organism=Pylaiella littoralis U1_48|type=CDS|length=327bp|location=Sequence derived from alignment at P-littoralis_Contig18:917449..917777- (Pylaiella littoralis U1_48)
GCGAGGTGTTCGGGCCAGGTACACCAGCTGGATCCGGGACAACTACGGGC
GCTCGGGGCAGAAGGTGACCGCGCCGAGCAGGGGGCTGGTCGCGACGTGG
GTAAAGGAGGTGTGGGACAACATCTCGGAGCGGACCATCCGCTCGTGCTT
CAAGGTCTGCGGTCTCACCCTCAACCTCGACGGAAGCGAGGACCACGCGT
GGTGCATCTACACGTTCGGAGACAACTACCGCGAGGTTCTTCGCGAGCAG
CGCGAGGAGTGGGAGCAAGCGCACGGCATCGGGCTCGAACCGCTCCAGCT
ACCGGTCATCCCTACCGGAGACGGCGT
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