mRNA_P-littoralis_Contig18.65.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig18.65.1
Unique NamemRNA_P-littoralis_Contig18.65.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig18.65.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig18contigP-littoralis_Contig18:286160..286546 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size387
Hectar predicted targeting categoryother localisation
Exons1
Cds size348
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789860.7449822-UTR-P-littoralis_Contig18:286159..2861961680789860.7449822-UTR-P-littoralis_Contig18:286159..286196Pylaiella littoralis U1_48UTRP-littoralis_Contig18 286160..286196 -
1680789860.7637842-UTR-P-littoralis_Contig18:286544..2865461680789860.7637842-UTR-P-littoralis_Contig18:286544..286546Pylaiella littoralis U1_48UTRP-littoralis_Contig18 286545..286546 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789860.7543073-CDS-P-littoralis_Contig18:286196..2865441680789860.7543073-CDS-P-littoralis_Contig18:286196..286544Pylaiella littoralis U1_48CDSP-littoralis_Contig18 286197..286544 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig18.65.1prot_P-littoralis_Contig18.65.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig18 286197..286544 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig18.65.1

>prot_P-littoralis_Contig18.65.1 ID=prot_P-littoralis_Contig18.65.1|Name=mRNA_P-littoralis_Contig18.65.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=116bp
MVFNIFLVALDHPTPKPWPYPTKDRVISLCSSQAILSLFEISVNKCCEKV
NRNGDPMCPATHVSFLERVRFTYPRLCGHLTRLRVSCSFVVVPVCPVAII
ISRGVNAFILHVSQS*
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mRNA from alignment at P-littoralis_Contig18:286160..286546-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig18.65.1 ID=mRNA_P-littoralis_Contig18.65.1|Name=mRNA_P-littoralis_Contig18.65.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=387bp|location=Sequence derived from alignment at P-littoralis_Contig18:286160..286546- (Pylaiella littoralis U1_48)
AGATGGTTTTCAACATTTTTCTGGTCGCGCTTGATCACCCCACCCCCAAA
CCCTGGCCATACCCGACGAAAGATAGAGTCATCTCTCTCTGCAGTTCGCA
GGCAATCTTGTCCCTTTTCGAGATTTCAGTGAACAAGTGCTGTGAAAAAG
TCAACCGAAATGGTGATCCCATGTGTCCCGCTACTCATGTGAGTTTTCTC
GAAAGGGTTCGCTTCACGTACCCCAGATTATGCGGGCATTTGACTCGACT
TCGAGTATCATGCAGTTTCGTCGTGGTGCCCGTCTGTCCTGTTGCCATTA
TAATTTCACGAGGCGTAAACGCTTTCATACTCCATGTTTCGCAGTCTTGA
ACATTGTGTTGAATTTCCTGGTAGGACCACTTCGCGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig18:286160..286546-

>mRNA_P-littoralis_Contig18.65.1 ID=mRNA_P-littoralis_Contig18.65.1|Name=mRNA_P-littoralis_Contig18.65.1|organism=Pylaiella littoralis U1_48|type=CDS|length=348bp|location=Sequence derived from alignment at P-littoralis_Contig18:286160..286546- (Pylaiella littoralis U1_48)
ATGGTTTTCAACATTTTTCTGGTCGCGCTTGATCACCCCACCCCCAAACC
CTGGCCATACCCGACGAAAGATAGAGTCATCTCTCTCTGCAGTTCGCAGG
CAATCTTGTCCCTTTTCGAGATTTCAGTGAACAAGTGCTGTGAAAAAGTC
AACCGAAATGGTGATCCCATGTGTCCCGCTACTCATGTGAGTTTTCTCGA
AAGGGTTCGCTTCACGTACCCCAGATTATGCGGGCATTTGACTCGACTTC
GAGTATCATGCAGTTTCGTCGTGGTGCCCGTCTGTCCTGTTGCCATTATA
ATTTCACGAGGCGTAAACGCTTTCATACTCCATGTTTCGCAGTCTTGA
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