mRNA_P-littoralis_Contig18.20.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig18.20.1
Unique NamemRNA_P-littoralis_Contig18.20.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig18.20.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig18contigP-littoralis_Contig18:128614..129168 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size555
Hectar predicted targeting categorysignal anchor
Exons1
Cds size333
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789860.6817205-UTR-P-littoralis_Contig18:128613..1286741680789860.6817205-UTR-P-littoralis_Contig18:128613..128674Pylaiella littoralis U1_48UTRP-littoralis_Contig18 128614..128674 -
1680789860.711538-UTR-P-littoralis_Contig18:129007..1291681680789860.711538-UTR-P-littoralis_Contig18:129007..129168Pylaiella littoralis U1_48UTRP-littoralis_Contig18 129008..129168 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789860.6960945-CDS-P-littoralis_Contig18:128674..1290071680789860.6960945-CDS-P-littoralis_Contig18:128674..129007Pylaiella littoralis U1_48CDSP-littoralis_Contig18 128675..129007 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig18.20.1prot_P-littoralis_Contig18.20.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig18 128675..129007 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig18.20.1

>prot_P-littoralis_Contig18.20.1 ID=prot_P-littoralis_Contig18.20.1|Name=mRNA_P-littoralis_Contig18.20.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=111bp
MTYHRCGYVRCPAWGFCGRFNFLYVALFRGDDDPLFSFVFQERKGGAIIG
PQRGVSPECDDRLRAKMRFLFHSAVKQTVSTVWFLTLFLAVWAGRQRSKP
STRAASCLFV*
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mRNA from alignment at P-littoralis_Contig18:128614..129168-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig18.20.1 ID=mRNA_P-littoralis_Contig18.20.1|Name=mRNA_P-littoralis_Contig18.20.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=555bp|location=Sequence derived from alignment at P-littoralis_Contig18:128614..129168- (Pylaiella littoralis U1_48)
GTTTTTTCGCCTAGATTTCGTTCGCCCACCATGGCGCTGATTTGCGGATG
AGGCTTCCCTCGGGGATGTACTTGCATACATTCGTTTTGTCTTGGAAAAT
GAAGAGAGCCCGGTAGAGTGGTGCACAGGGAGGGTGCGGCGACCACCCCA
ACGTTGACGTAATGACATATCATAGATGTGGTTACGTTCGCTGCCCCGCG
TGGGGGTTTTGTGGCAGATTCAATTTCTTGTATGTAGCTCTCTTTCGAGG
AGACGACGACCCCCTGTTTTCGTTTGTTTTTCAAGAGAGAAAGGGAGGGG
CCATCATCGGTCCGCAGCGGGGTGTCTCGCCTGAGTGTGACGACCGCTTG
CGGGCTAAAATGAGGTTCCTTTTTCACTCGGCCGTAAAACAAACCGTGTC
AACCGTGTGGTTTTTGACTCTCTTCTTAGCTGTCTGGGCAGGGCGGCAAC
GAAGCAAGCCTTCCACGCGCGCAGCTAGCTGTCTGTTTGTCTGACACCAG
TCGACTTATCGACTTATCGATGAACTCGATGAACTTAGCCCTCTGTTGTT
CACAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig18:128614..129168-

>mRNA_P-littoralis_Contig18.20.1 ID=mRNA_P-littoralis_Contig18.20.1|Name=mRNA_P-littoralis_Contig18.20.1|organism=Pylaiella littoralis U1_48|type=CDS|length=333bp|location=Sequence derived from alignment at P-littoralis_Contig18:128614..129168- (Pylaiella littoralis U1_48)
ATGACATATCATAGATGTGGTTACGTTCGCTGCCCCGCGTGGGGGTTTTG
TGGCAGATTCAATTTCTTGTATGTAGCTCTCTTTCGAGGAGACGACGACC
CCCTGTTTTCGTTTGTTTTTCAAGAGAGAAAGGGAGGGGCCATCATCGGT
CCGCAGCGGGGTGTCTCGCCTGAGTGTGACGACCGCTTGCGGGCTAAAAT
GAGGTTCCTTTTTCACTCGGCCGTAAAACAAACCGTGTCAACCGTGTGGT
TTTTGACTCTCTTCTTAGCTGTCTGGGCAGGGCGGCAACGAAGCAAGCCT
TCCACGCGCGCAGCTAGCTGTCTGTTTGTCTGA
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