mRNA_P-littoralis_Contig18.161.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig18.161.1
Unique NamemRNA_P-littoralis_Contig18.161.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig18.161.1 vs. uniprot
Match: D8LFJ9_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFJ9_ECTSI)

HSP 1 Score: 76.3 bits (186), Expect = 3.610e-13
Identity = 39/67 (58.21%), Postives = 45/67 (67.16%), Query Frame = 3 
Query:  273 KIPSP---MAQAEREALLTLYSATGGAD*KNNSNWNMGAHLWQWHGVSTNDDGRVVELNLSGNNLKG 464
            +IP P   MAQ +REAL+ LY+A GGA  +NN NWN  A L QWHGV  N  GRVV L L  NNL+G
Sbjct:   17 RIPRPPYTMAQTDREALVALYTAIGGAKWRNNRNWNTSAALSQWHGVEVNSQGRVVNLFLWDNNLQG 83
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BLAST of mRNA_P-littoralis_Contig18.161.1 vs. uniprot
Match: A0A6H5KVC7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVC7_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 3.450e-12
Identity = 35/61 (57.38%), Postives = 45/61 (73.77%), Query Frame = 3 
Query:  288 MAQAEREALLTLYSATGGAD*KNNSNWNMGAHLWQWHGVSTNDDGRVVELNLSGNNLKGIL 470
            MAQ +REAL+ LY+ATGGA  +N  NWN  A L QW+GV  +  GRVV L+L+GNNL+G +
Sbjct:   96 MAQPDREALVALYNATGGAKWENKRNWNTRAALSQWYGVEVDSQGRVVTLSLAGNNLQGTI 156
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BLAST of mRNA_P-littoralis_Contig18.161.1 vs. uniprot
Match: D7FM75_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM75_ECTSI)

HSP 1 Score: 73.2 bits (178), Expect = 2.830e-11
Identity = 33/57 (57.89%), Postives = 44/57 (77.19%), Query Frame = 3 
Query:  300 EREALLTLYSATGGAD*KNNSNWNMGAHLWQWHGVSTNDDGRVVELNLSGNNLKGIL 470
            +R+AL++LY+ATGGA+ K   NW+ GA L QW G+  +D GRVVELNL  NNL+GI+
Sbjct:   41 DRDALVSLYNATGGANWKQKENWDTGADLSQWCGIKVDDQGRVVELNLFWNNLQGII 97
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BLAST of mRNA_P-littoralis_Contig18.161.1 vs. uniprot
Match: D7FPS8_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPS8_ECTSI)

HSP 1 Score: 72.4 bits (176), Expect = 5.250e-11
Identity = 33/66 (50.00%), Postives = 45/66 (68.18%), Query Frame = 3 
Query:  273 KIPSPMAQAEREALLTLYSATGGAD*KNNSNWNMGAHLWQWHGVSTNDDGRVVELNLSGNNLKGIL 470
            ++P PMA  +R+AL+ L+ ATGG +    SNW   A L  W GV  N++GRVVEL+LS NNL+G +
Sbjct:  182 EVPPPMASPDRDALVALFHATGGDNWTRKSNWCTSAKLGTWKGVKVNEEGRVVELDLSDNNLRGTI 247
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BLAST of mRNA_P-littoralis_Contig18.161.1 vs. uniprot
Match: A0A6H5JBQ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBQ0_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 9.640e-11
Identity = 33/66 (50.00%), Postives = 43/66 (65.15%), Query Frame = 3 
Query:  273 KIPSPMAQAEREALLTLYSATGGAD*KNNSNWNMGAHLWQWHGVSTNDDGRVVELNLSGNNLKGIL 470
            ++P PMA  +R+AL+ L+ ATGG +    SNW   A L  W GV  N  GRVVEL+LS NNL+G +
Sbjct:  184 EVPPPMASPDRDALVALFHATGGDNWTRKSNWCTAARLGTWEGVQVNQQGRVVELDLSDNNLRGAI 249
[Close]
BLAST of mRNA_P-littoralis_Contig18.161.1 vs. uniprot
Match: A0A6H5JFA4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFA4_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 1.310e-10
Identity = 34/62 (54.84%), Postives = 41/62 (66.13%), Query Frame = 3 
Query:  279 PSPMAQAEREALLTLYSATGGAD*KNNSNWNMGAHLWQWHGVSTNDDGRVVELNLSGNNLKG 464
            P  MAQ +RE+L   Y+AT GA    N+NW  GA L  W+GV  ND GRVV+L LS NNL+G
Sbjct:   32 PPTMAQTDRESLTAFYNATDGAKWIRNTNWGSGAPLSDWYGVEANDQGRVVKLYLSSNNLRG 93
[Close]
BLAST of mRNA_P-littoralis_Contig18.161.1 vs. uniprot
Match: D7FSL6_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSL6_ECTSI)

HSP 1 Score: 70.9 bits (172), Expect = 1.540e-10
Identity = 33/59 (55.93%), Postives = 41/59 (69.49%), Query Frame = 3 
Query:  288 MAQAEREALLTLYSATGGAD*KNNSNWNMGAHLWQWHGVSTNDDGRVVELNLSGNNLKG 464
            MAQ +R AL+ LY AT G   KNN NW+  ++L  WHGV  ND GRVV+L+L  NNL+G
Sbjct:    1 MAQTDRAALVVLYVATNGTSWKNNDNWSTESNLSLWHGVKVNDQGRVVDLSLGYNNLRG 59
[Close]
BLAST of mRNA_P-littoralis_Contig18.161.1 vs. uniprot
Match: D7FHA4_ECTSI (Hypothetical leucine rich repeat protein (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHA4_ECTSI)

HSP 1 Score: 65.9 bits (159), Expect = 1.670e-9
Identity = 33/61 (54.10%), Postives = 41/61 (67.21%), Query Frame = 3 
Query:  288 MAQAEREALLTLYSATGGAD*KNNSNWNMGAHLWQWHGVSTNDDGRVVELNLSGNNLKGIL 470
            M   +R AL+ L+ +TGG   K+N+ W+  A L QW+GV  N DGRV EL LS NNLKGIL
Sbjct:    1 MPSEDRAALVALFRSTGGTLWKHNAYWDTDAKLSQWYGVYVNQDGRVKELRLSRNNLKGIL 61
[Close]
BLAST of mRNA_P-littoralis_Contig18.161.1 vs. uniprot
Match: A0A6G2JIA8_9BACT (BIG2 domain-containing protein n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A6G2JIA8_9BACT)

HSP 1 Score: 66.6 bits (161), Expect = 4.420e-9
Identity = 34/66 (51.52%), Postives = 42/66 (63.64%), Query Frame = 3 
Query:  273 KIPSPMAQAEREALLTLYSATGGAD*KNNSNWNMGAHLWQWHGVSTNDDGRVVELNLSGNNLKGIL 470
            ++P P    +R+AL+ LY+ TGG D    +NW     L  WHGVS NDDGRV EL+L  NNLKG L
Sbjct:  152 QVPDP----DRDALVALYNGTGGPDWIIQTNWLSDLPLRDWHGVSLNDDGRVEELHLFDNNLKGSL 213
[Close]
BLAST of mRNA_P-littoralis_Contig18.161.1 vs. uniprot
Match: A0A6L7MLT0_9CHLR (Uncharacterized protein n=2 Tax=Bacteria TaxID=2 RepID=A0A6L7MLT0_9CHLR)

HSP 1 Score: 66.6 bits (161), Expect = 5.010e-9
Identity = 28/57 (49.12%), Postives = 42/57 (73.68%), Query Frame = 3 
Query:  294 QAEREALLTLYSATGGAD*KNNSNWNMGAHLWQWHGVSTNDDGRVVELNLSGNNLKG 464
            + +R AL+ LY+AT G++ +NN+NW     + +WHGV+T+DDGRV E++L GN L G
Sbjct:  241 ETDRAALVALYNATDGSNWRNNTNWLSDMPVGEWHGVATDDDGRVTEIDLRGNRLNG 297
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig18.161.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFJ9_ECTSI3.610e-1358.21Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5KVC7_9PHAE3.450e-1257.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FM75_ECTSI2.830e-1157.89LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
D7FPS8_ECTSI5.250e-1150.00Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5JBQ0_9PHAE9.640e-1150.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JFA4_9PHAE1.310e-1054.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FSL6_ECTSI1.540e-1055.93Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
D7FHA4_ECTSI1.670e-954.10Hypothetical leucine rich repeat protein (Partial)... [more]
A0A6G2JIA8_9BACT4.420e-951.52BIG2 domain-containing protein n=1 Tax=Gemmatimona... [more]
A0A6L7MLT0_9CHLR5.010e-949.12Uncharacterized protein n=2 Tax=Bacteria TaxID=2 R... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig18contigP-littoralis_Contig18:705915..707777 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size692
Hectar predicted targeting categoryother localisation
Exons2
Cds size432
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789860.5467336-UTR-P-littoralis_Contig18:705914..7061741680789860.5467336-UTR-P-littoralis_Contig18:705914..706174Pylaiella littoralis U1_48UTRP-littoralis_Contig18 705915..706174 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789860.5559359-CDS-P-littoralis_Contig18:706174..7063311680789860.5559359-CDS-P-littoralis_Contig18:706174..706331Pylaiella littoralis U1_48CDSP-littoralis_Contig18 706175..706331 -
1680789860.564594-CDS-P-littoralis_Contig18:707502..7077771680789860.564594-CDS-P-littoralis_Contig18:707502..707777Pylaiella littoralis U1_48CDSP-littoralis_Contig18 707503..707777 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig18.161.1prot_P-littoralis_Contig18.161.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig18 706175..707777 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig18.161.1

>prot_P-littoralis_Contig18.161.1 ID=prot_P-littoralis_Contig18.161.1|Name=mRNA_P-littoralis_Contig18.161.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=144bp
MLRSAETGEKTGGCTQPTTDRHQIDAQARGIIHCSPLHLSGEVWQAVQSS
GTRKDSTHSPPHRERSYTKRGAVPNEKDNSIQLRPRFCKLQRSLLQWRRR
NVRHCLPSTVLPVGLTRRTTPTGTWVPISGNGTVSQPTTMAAL*
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mRNA from alignment at P-littoralis_Contig18:705915..707777-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig18.161.1 ID=mRNA_P-littoralis_Contig18.161.1|Name=mRNA_P-littoralis_Contig18.161.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1863bp|location=Sequence derived from alignment at P-littoralis_Contig18:705915..707777- (Pylaiella littoralis U1_48)
ATGTTGCGAAGTGCAGAGACAGGGGAGAAGACAGGTGGGTGCACTCAGCC
CACTACAGACAGGCACCAAATCGACGCCCAAGCACGAGGCATCATACACT
GCAGCCCTCTGCACTTGTCGGGCGAGGTCTGGCAGGCAGTGCAGTCGTCG
GGCACCCGCAAAGATAGCACCCATTCACCACCCCATAGAGAGCGGAGCTA
CACAAAGAGAGGAGCGGTGCCAAACGAAAAGGACAACAGCATCCAGCTTC
GACCGCGCTTCTGCAAGCTGCAAAGGTGAGAGCATGCGGGGGAGACCCTC
GCGCGCAGTGGAGACATGTGGAGAGATTACGAGTTTGCGAGATGGGATGC
ACGCGGCAACCCCGGAGAAGTTCGGCTTGTGGCCTGAGAACTTGACTAGT
TTTCCCATGCATTATGGTGCTCTGTGGCGCACCTTTTTTCCATTTTCCGG
GGTTGCGTTCTGCGTTCGTTTGCGCTTTTTTTCCGTGATGGGGCTGTAGA
ACATGCACGGTGGTGCGTGAGAGTGTAACCACGCCGCAGCGCTTTGAGGC
ATCGGTGCGCGCCCCAGGCACGTGGAGGGGTTACGAGTTTGCGAGATGGA
ACGCATGCGGCGACCCTGGTGATGTTCGGCGCGTGGCGTCACAACCTGAC
TTGTTTGCCCATGCATTTTGGTGCTCTGTAGCGCACCTTTTTTTGTTTTC
CGGGGTCGCGTTCTTCGTTTTTTTCCCGTGATGGGGCTTTAGAACATGCC
CTCTTGTTGTTGATTAGGGAGGTACGCGAGCCGCAGCGCTTTGTGGCATC
GGTGCGCGCCTCAACAACGTGTAGAGATTGCGAGTTTGTGAAATGGAATG
CACGCGACAACCCCGGTGAAGTTCGGCGCGTGGCCTGACAACTTGACTTG
TTTGCCCATGCATTTTGGTGCGTTGTGTCGCACCTTTGTTTATTTCCGGG
GTCGCGTTCTGCATTTTTTGCTGTTTTTGTGATCGCCCTTCTTTTGGTGC
GGTAGAACATGCCCTTGTTGTGCGTGTGTAACCAGGCCGCAGCGCTTTGT
GGCATCGGTGCGCGCCGCAGACACGTGGAGAGGTTGTTGCGATTTTGCGA
GATGGAACGCACGCTGCAACCCCGGTGAAGTTCGGCGCGTGGCCTGATAA
TTTAGCTTAGTTGCCCGTGCCTGTGTAAAACATACGTGACGAGTGTTTAG
ATGCCCTCTTTCGGAGAGGGAGGTGTGACCACGCCGCAAGAGCGTTGACG
AATGATGCGCAAAACCTAAGTCAAATGATGATTCTTCGATGCGATTATCC
CGTAATGTACAGGTCGTATGAAACACCGCTCAACCGCGAAAGACGACCGA
CAGAGAGCGATTTCACCCTAACTGACTGCCACGTCGACACCATTTTTTGC
GTTTGTCCCGCAAACTCCCGTCCCTCCCTCTGTGCACCCCGCGCAGATCC
CTTCTCCAATGGCGCAGGCGGAACGTGAGGCACTGCTTACCCTCTACAGT
GCTACCGGTGGGGCTGACTAGAAGAACAACTCCAACTGGAACATGGGTGC
CCATCTCTGGCAATGGCACGGTGTCTCAACCAACGACGATGGCCGCGTTG
TAGAGCTAAACCTGTCGGGAAACAACCTCAAAGGTATTCTAAGGTTTAGT
CCACGAAGGCGCGCTGCTGTCTTGCGATGTGCCTGACCTTCCCCAAGAAT
TCGTTGACCGAAAGTGGCCCTTTCATAAAATGTACCACTCTGTCCGGAAA
TAAAGGTGTGATTCGAACTGACGGAAATATAGGTGTGATTTGGAAAATAC
TGCTGTATGTGACCCTACGGGCTGTTTCGGGACCCCCAAGTGGTTTCAAT
ATTGATGTCTTAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig18:705915..707777-

>mRNA_P-littoralis_Contig18.161.1 ID=mRNA_P-littoralis_Contig18.161.1|Name=mRNA_P-littoralis_Contig18.161.1|organism=Pylaiella littoralis U1_48|type=CDS|length=432bp|location=Sequence derived from alignment at P-littoralis_Contig18:705915..707777- (Pylaiella littoralis U1_48)
ATGTTGCGAAGTGCAGAGACAGGGGAGAAGACAGGTGGGTGCACTCAGCC
CACTACAGACAGGCACCAAATCGACGCCCAAGCACGAGGCATCATACACT
GCAGCCCTCTGCACTTGTCGGGCGAGGTCTGGCAGGCAGTGCAGTCGTCG
GGCACCCGCAAAGATAGCACCCATTCACCACCCCATAGAGAGCGGAGCTA
CACAAAGAGAGGAGCGGTGCCAAACGAAAAGGACAACAGCATCCAGCTTC
GACCGCGCTTCTGCAAGCTGCAAAGATCCCTTCTCCAATGGCGCAGGCGG
AACGTGAGGCACTGCTTACCCTCTACAGTGCTACCGGTGGGGCTGACTAG
AAGAACAACTCCAACTGGAACATGGGTGCCCATCTCTGGCAATGGCACGG
TGTCTCAACCAACGACGATGGCCGCGTTGTAG
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