mRNA_P-littoralis_Contig18.53.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig18.53.2
Unique NamemRNA_P-littoralis_Contig18.53.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig18.53.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig18contigP-littoralis_Contig18:241298..242456 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size391
Hectar predicted targeting categoryother localisation
Exons3
Cds size378
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789860.4295597-UTR-P-littoralis_Contig18:241297..2413081680789860.4295597-UTR-P-littoralis_Contig18:241297..241308Pylaiella littoralis U1_48UTRP-littoralis_Contig18 241298..241308 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789860.4868464-CDS-P-littoralis_Contig18:241308..2415401680789860.4868464-CDS-P-littoralis_Contig18:241308..241540Pylaiella littoralis U1_48CDSP-littoralis_Contig18 241309..241540 +
1680789860.5012739-CDS-P-littoralis_Contig18:242114..2422391680789860.5012739-CDS-P-littoralis_Contig18:242114..242239Pylaiella littoralis U1_48CDSP-littoralis_Contig18 242115..242239 +
1680789860.5111084-CDS-P-littoralis_Contig18:242435..2424561680789860.5111084-CDS-P-littoralis_Contig18:242435..242456Pylaiella littoralis U1_48CDSP-littoralis_Contig18 242436..242456 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig18.53.2prot_P-littoralis_Contig18.53.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig18 241309..242456 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig18.53.2

>prot_P-littoralis_Contig18.53.2 ID=prot_P-littoralis_Contig18.53.2|Name=mRNA_P-littoralis_Contig18.53.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=126bp
MAQSMRERGYIKHDSLPSVVIPRTSNIAANGVPEGALILNGNLRLKAAKL
VFGEDFKMSFAVYYDFEKPCDRKAAACVLQSSAEELQPRTIYDNFYFWCD
FLTDLPKPDYPHVKQAFERVGARSPA
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mRNA from alignment at P-littoralis_Contig18:241298..242456+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig18.53.2 ID=mRNA_P-littoralis_Contig18.53.2|Name=mRNA_P-littoralis_Contig18.53.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=1159bp|location=Sequence derived from alignment at P-littoralis_Contig18:241298..242456+ (Pylaiella littoralis U1_48)
GAGTGGAACGCATGGCTCAATCAATGAGGGAACGCGGATATATCAAACAC
GACTCTTTGCCATCGGTGGTCATCCCGCGTACGAGCAATATTGCAGCAAA
TGGTGTACCGGAAGGAGCCTTAATTCTCAATGGAAACCTCAGGCTGAAAG
CGGCGAAACTGGTGTTTGGCGAAGATTTCAAAATGTCTTTCGCCGTTTAC
TACGACTTTGAAAAACCATGTGACCGGAAAGCAGCGGCCTGCGGTGAGAA
ATGCTGCACTTTGGCTGTTTTTCAGTAAGACCTACCGGTACTCAGCCGGA
ATAGACGTATGTCAACATCTCCTGAAAGTGAGGTTCACCACCGTGAGCCC
GTCGGGTACACAAAACTCATCGACGTTAAACATTACCGCCGTATAAATCC
TGCAAAAAGCATCAAGAAGGGCGTGTTTTCAATGGTGAGGCTTGTCCAGA
GAGCACGAGCACGAACCACGTACGTAGGCGTGGTACTGATTCCTCCTTAC
ACTGTTGCTGCGTGTTTCCGGTATTTTTCACACGAAGCATGCTCCATACT
GAAAAAAATACTTGAAGGTCATCTTCCCTTTCACAGACGCACCCAGTTTT
CAACCAGCACATATGCACATCACACCAGTCCATTCAACAAACCTTAACGT
AAATATGAGGGACCCAAATATATAAAAACAACCAGAATTCGCCCGTCGAA
ACATATCAAGAACTATTAGTTAGGATCGGTAATCGTCCAGCTGCACAAGT
CGCGATAACCACCGACTCATTCAACACCTTTGTTTGCGCGCTTTTGTACA
ACTAATATGCGTCACAGTCCTCCAAAGTTCTGCGGAAGAGCTCCAGCCTC
GCACCATCTACGACAACTTTTACTTCTGGTGTGATTTCCTGACAGACTTG
CCCAAGCCCGATTACCCGCATGTGAAGCAAGCTTTCGAGAGGGTGAGCGT
CTGTTCCGCAGCCTGTTGTGGTGCTTTTACTTCTATCCACATGTCAAAGT
GCGCCCTTACGCGTCACAGTATCGGAACGGCCTCCACGTCGACAATCTGC
GACCAAAATTAATATAAGCCGGCTGACTCGTACATCAATAGCCTAAATCC
TGTTTTTGTTTTCCGCTTCGTTCTCCGATAAACACAAGGTTGGTGCTAGG
TCCCCCGCA
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Coding sequence (CDS) from alignment at P-littoralis_Contig18:241298..242456+

>mRNA_P-littoralis_Contig18.53.2 ID=mRNA_P-littoralis_Contig18.53.2|Name=mRNA_P-littoralis_Contig18.53.2|organism=Pylaiella littoralis U1_48|type=CDS|length=378bp|location=Sequence derived from alignment at P-littoralis_Contig18:241298..242456+ (Pylaiella littoralis U1_48)
ATGGCTCAATCAATGAGGGAACGCGGATATATCAAACACGACTCTTTGCC
ATCGGTGGTCATCCCGCGTACGAGCAATATTGCAGCAAATGGTGTACCGG
AAGGAGCCTTAATTCTCAATGGAAACCTCAGGCTGAAAGCGGCGAAACTG
GTGTTTGGCGAAGATTTCAAAATGTCTTTCGCCGTTTACTACGACTTTGA
AAAACCATGTGACCGGAAAGCAGCGGCCTGCGTCCTCCAAAGTTCTGCGG
AAGAGCTCCAGCCTCGCACCATCTACGACAACTTTTACTTCTGGTGTGAT
TTCCTGACAGACTTGCCCAAGCCCGATTACCCGCATGTGAAGCAAGCTTT
CGAGAGGGTTGGTGCTAGGTCCCCCGCA
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