mRNA_P-littoralis_Contig179.85.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig179.85.1
Unique NamemRNA_P-littoralis_Contig179.85.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig179.85.1 vs. uniprot
Match: A0A6H5KU33_9PHAE (MEP9 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU33_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 8.780e-20
Identity = 68/191 (35.60%), Postives = 104/191 (54.45%), Query Frame = 2
Query:   29 HRDSWM-DVNGNEHAINALSNIHRLTTCHTSFSTDHRALGRLQPYKRSPAILWRNRTVFNGSSSPRAMFE-------AWTPCETRFNHLQSALSVTDST--AVKLVVLDEEDSLTNLSQCALRHLIDRSTNLVRFCLCCNYVNKLSSGIRSRCTAFRFSGIPKSKMRCALLYVLQMGRMKMSSECLDAVID 571
            HR + + DV+GN+  I AL     +       +T +  L       ++ +IL   ++ F G++      E       +      + N      SV+D +  A+KLV+LDE D LT+ +Q ALRHLI+ +    RFCLCCNY+N+LSSG+RSRCT+F FSGI   ++   L  V    R+++S E L+AV++
Sbjct:    8 HRPTRLQDVSGNDQVIRALQTFKSME------ATPNLILHGPPGSGKTSSILSMAKSFFGGTNISTMTLELNAGDSRSIGTMRDQINFFTRCSSVSDKSTNALKLVILDEADGLTSCAQRALRHLIETTCGRARFCLCCNYINRLSSGLRSRCTSFSFSGIGNVQLARTLRKVAHKERLEISEEGLNAVVN 192          
BLAST of mRNA_P-littoralis_Contig179.85.1 vs. uniprot
Match: Q8QN66_ESV1K (EsV-1-224 n=2 Tax=root TaxID=1 RepID=Q8QN66_ESV1K)

HSP 1 Score: 97.1 bits (240), Expect = 1.420e-19
Identity = 68/191 (35.60%), Postives = 102/191 (53.40%), Query Frame = 2
Query:   29 HRDSWM-DVNGNEHAINALSNIHRLTTCHTSFSTDHRALGRLQPYKRSPAILWRNRTVFNGSSSPRAMFEAWTPCETR--------FNHLQSALSVTD--STAVKLVVLDEEDSLTNLSQCALRHLIDRSTNLVRFCLCCNYVNKLSSGIRSRCTAFRFSGIPKSKMRCALLYVLQMGRMKMSSECLDAVI 568
            HR + + DV+GN+H I AL +        TS  T    +    P     + +      F G ++   M       ++R         +      SVTD  + A+KLV+LDE D LT+ +Q ALRHLI+ ++   RFCLCCNY+++LSSG+RSRCT+F FSGI   ++   L  V +   +++S E L+AV+
Sbjct:    8 HRPTRLQDVSGNDHVIRALQSF-------TSMETTPNMILHGPPGSGKTSSIISMAKSFFGRTNISIMTLELNAGDSRSIGTMRDQIHFFTRCSSVTDRSTNALKLVILDEADGLTSCAQRALRHLIETTSGRARFCLCCNYISRLSSGLRSRCTSFSFSGIGNVQLAHTLREVARKEDLEISEEGLNAVV 191          
BLAST of mRNA_P-littoralis_Contig179.85.1 vs. uniprot
Match: A0A139XXX9_TOXGO (Replication factor C subunit (Fragment) n=1 Tax=Toxoplasma gondii ARI TaxID=1074872 RepID=A0A139XXX9_TOXGO)

HSP 1 Score: 83.6 bits (205), Expect = 1.100e-15
Identity = 46/128 (35.94%), Postives = 75/128 (58.59%), Query Frame = 2
Query:  185 RNRTVFNGSSSPRAMFEAWTPCETRFNHLQSALSVTDSTAVKLVVLDEEDSLTNLSQCALRHLIDRSTNLVRFCLCCNYVNKLSSGIRSRCTAFRFSGIPKSKMRCALLYVLQMGRMKMSSECLDAVI 568
            +NR +F  S+ P     A    E   +H Q         ++KL++LDE D +TN +Q ALR +++     VRFCL CN+VNK++  I+SRCT FRF+ +  + ++     ++Q  +MK+S + LDA++
Sbjct:   46 QNRLIFGKSAVP-----ATEAAEATSSHGQEKKGQ-GGPSLKLIILDEADQMTNAAQNALRRIMEAYARNVRFCLICNFVNKITPAIQSRCTGFRFTPVSSASLKTKAAQIVQDEKMKLSDDGLDALV 167          
BLAST of mRNA_P-littoralis_Contig179.85.1 vs. uniprot
Match: A0A165FU20_EXIGL (DNA replication factor n=1 Tax=Exidia glandulosa HHB12029 TaxID=1314781 RepID=A0A165FU20_EXIGL)

HSP 1 Score: 86.3 bits (212), Expect = 1.280e-15
Identity = 41/91 (45.05%), Postives = 65/91 (71.43%), Query Frame = 2
Query:  296 STAVKLVVLDEEDSLTNLSQCALRHLIDRSTNLVRFCLCCNYVNKLSSGIRSRCTAFRFSGIPKSKMRCALLYVLQMGRMKMSSECLDAVI 568
            S + KL++LDE D +TN +Q ALR +I++ T  VRFC+ CNYVNK++  I+SRCT FRFS +P   +R  + +V+ M ++K+  + +DA++
Sbjct:  126 SKSFKLIILDEADMMTNAAQSALRRVIEQYTKNVRFCIICNYVNKIAPAIQSRCTRFRFSPLPIEDVRRRVEHVVDMEKVKIEPDGMDALL 216          
BLAST of mRNA_P-littoralis_Contig179.85.1 vs. uniprot
Match: A0A381VEQ7_9ZZZZ (AAA domain-containing protein n=1 Tax=marine metagenome TaxID=408172 RepID=A0A381VEQ7_9ZZZZ)

HSP 1 Score: 85.9 bits (211), Expect = 1.420e-15
Identity = 37/90 (41.11%), Postives = 64/90 (71.11%), Query Frame = 2
Query:  305 VKLVVLDEEDSLTNLSQCALRHLIDRSTNLVRFCLCCNYVNKLSSGIRSRCTAFRFSGIPKSKMRCALLYVLQMGRMKMSSECLDAVIDM 574
            +K+++LDE D +TN++QCALR +I++ +  VRFC+ CNY+NK+   I+SRC  FRFS +   +MR  + YV++  ++K+S + +  +I +
Sbjct:  104 LKIIILDEADYMTNIAQCALRQIIEKYSKNVRFCIICNYINKIIPAIQSRCMKFRFSLLTDDEMRNKIEYVVKQEKLKISDKAITTIISL 193          
BLAST of mRNA_P-littoralis_Contig179.85.1 vs. uniprot
Match: A0A086M2G2_TOXGO (Putative replication factor C, subunit 5 (Fragment) n=1 Tax=Toxoplasma gondii RUB TaxID=935652 RepID=A0A086M2G2_TOXGO)

HSP 1 Score: 83.6 bits (205), Expect = 2.700e-15
Identity = 46/128 (35.94%), Postives = 75/128 (58.59%), Query Frame = 2
Query:  185 RNRTVFNGSSSPRAMFEAWTPCETRFNHLQSALSVTDSTAVKLVVLDEEDSLTNLSQCALRHLIDRSTNLVRFCLCCNYVNKLSSGIRSRCTAFRFSGIPKSKMRCALLYVLQMGRMKMSSECLDAVI 568
            +NR +F  S+ P     A    E   +H Q         ++KL++LDE D +TN +Q ALR +++     VRFCL CN+VNK++  I+SRCT FRF+ +  + ++     ++Q  +MK+S + LDA++
Sbjct:    1 QNRLIFGKSAVP-----ATEAAEATSSHGQEKKGQ-GGPSLKLIILDEADQMTNAAQNALRRIMEAYARNVRFCLICNFVNKITPAIQSRCTGFRFTPVSSASLKTKAAQIVQDEKMKLSDDGLDALV 122          
BLAST of mRNA_P-littoralis_Contig179.85.1 vs. uniprot
Match: A0A086Q7R5_TOXGO (Putative replication factor C, subunit 5 (Fragment) n=1 Tax=Toxoplasma gondii VAND TaxID=933077 RepID=A0A086Q7R5_TOXGO)

HSP 1 Score: 83.6 bits (205), Expect = 5.260e-15
Identity = 46/128 (35.94%), Postives = 75/128 (58.59%), Query Frame = 2
Query:  185 RNRTVFNGSSSPRAMFEAWTPCETRFNHLQSALSVTDSTAVKLVVLDEEDSLTNLSQCALRHLIDRSTNLVRFCLCCNYVNKLSSGIRSRCTAFRFSGIPKSKMRCALLYVLQMGRMKMSSECLDAVI 568
            +NR +F  S+ P     A    E   +H Q         ++KL++LDE D +TN +Q ALR +++     VRFCL CN+VNK++  I+SRCT FRF+ +  + ++     ++Q  +MK+S + LDA++
Sbjct:  131 QNRLIFGKSAVP-----ATEAAEATSSHGQEKKGQ-GGPSLKLIILDEADQMTNAAQNALRRIMEAYARNVRFCLICNFVNKITPAIQSRCTGFRFTPVSSASLKTKAAQIVQDEKMKLSDDGLDALV 252          
BLAST of mRNA_P-littoralis_Contig179.85.1 vs. uniprot
Match: C1MVS5_MICPC (Predicted protein n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1MVS5_MICPC)

HSP 1 Score: 84.3 bits (207), Expect = 5.650e-15
Identity = 43/100 (43.00%), Postives = 58/100 (58.00%), Query Frame = 1
Query:    7 LWVERYRPSRLVDGCQRERTCH*CTFEYSSIDDMPHLLLHGPPGSGKTSAVQAIAGNFMAEQDCLQWLKLTASDVRGVDTMRNQIQSFTKCFVCYRFNSS 306
            +WVE+YRPSRL D    +          +  D +PHLLL+GPPG+GKTS + A+A            L+L ASD RG+D +RN+IQSF       RFN++
Sbjct:    1 MWVEKYRPSRLADVAAHKDIID-TIGRLTKEDKLPHLLLYGPPGTGKTSTILAVAKELYGPAFAQMTLELNASDDRGIDVVRNEIQSFASTM---RFNAT 96          
BLAST of mRNA_P-littoralis_Contig179.85.1 vs. uniprot
Match: A0A086KIM9_TOXGO (Putative replication factor C, subunit 5 (Fragment) n=1 Tax=Toxoplasma gondii p89 TaxID=943119 RepID=A0A086KIM9_TOXGO)

HSP 1 Score: 83.2 bits (204), Expect = 5.860e-15
Identity = 46/128 (35.94%), Postives = 75/128 (58.59%), Query Frame = 2
Query:  185 RNRTVFNGSSSPRAMFEAWTPCETRFNHLQSALSVTDSTAVKLVVLDEEDSLTNLSQCALRHLIDRSTNLVRFCLCCNYVNKLSSGIRSRCTAFRFSGIPKSKMRCALLYVLQMGRMKMSSECLDAVI 568
            +NR +F  S+ P     A    E   +H Q         ++KL++LDE D +TN +Q ALR +++     VRFCL CN+VNK++  I+SRCT FRF+ +  + ++     ++Q  +MK+S + LDA++
Sbjct:    1 QNRLIFGKSAVP-----ATEGAEATSSHGQEKKGQ-GGPSLKLIILDEADQMTNAAQNALRRIMEAYARNVRFCLICNFVNKITPAIQSRCTGFRFTPVSSASLKTKAAQIVQDEKMKLSDDGLDALV 122          
BLAST of mRNA_P-littoralis_Contig179.85.1 vs. uniprot
Match: A0A0F7US02_TOXGV (Activator 1 36 kDa, putative n=15 Tax=Toxoplasma gondii TaxID=5811 RepID=A0A0F7US02_TOXGV)

HSP 1 Score: 83.6 bits (205), Expect = 1.770e-14
Identity = 46/128 (35.94%), Postives = 75/128 (58.59%), Query Frame = 2
Query:  185 RNRTVFNGSSSPRAMFEAWTPCETRFNHLQSALSVTDSTAVKLVVLDEEDSLTNLSQCALRHLIDRSTNLVRFCLCCNYVNKLSSGIRSRCTAFRFSGIPKSKMRCALLYVLQMGRMKMSSECLDAVI 568
            +NR +F  S+ P     A    E   +H Q         ++KL++LDE D +TN +Q ALR +++     VRFCL CN+VNK++  I+SRCT FRF+ +  + ++     ++Q  +MK+S + LDA++
Sbjct:  132 QNRLIFGKSAVP-----ATEAAEATSSHGQEKKGQ-GGPSLKLIILDEADQMTNAAQNALRRIMEAYARNVRFCLICNFVNKITPAIQSRCTGFRFTPVSSASLKTKAAQIVQDEKMKLSDDGLDALV 253          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig179.85.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KU33_9PHAE8.780e-2035.60MEP9 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
Q8QN66_ESV1K1.420e-1935.60EsV-1-224 n=2 Tax=root TaxID=1 RepID=Q8QN66_ESV1K[more]
A0A139XXX9_TOXGO1.100e-1535.94Replication factor C subunit (Fragment) n=1 Tax=To... [more]
A0A165FU20_EXIGL1.280e-1545.05DNA replication factor n=1 Tax=Exidia glandulosa H... [more]
A0A381VEQ7_9ZZZZ1.420e-1541.11AAA domain-containing protein n=1 Tax=marine metag... [more]
A0A086M2G2_TOXGO2.700e-1535.94Putative replication factor C, subunit 5 (Fragment... [more]
A0A086Q7R5_TOXGO5.260e-1535.94Putative replication factor C, subunit 5 (Fragment... [more]
C1MVS5_MICPC5.650e-1543.00Predicted protein n=1 Tax=Micromonas pusilla (stra... [more]
A0A086KIM9_TOXGO5.860e-1535.94Putative replication factor C, subunit 5 (Fragment... [more]
A0A0F7US02_TOXGV1.770e-1435.94Activator 1 36 kDa, putative n=15 Tax=Toxoplasma g... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig179contigP-littoralis_Contig179:430850..431754 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog38833.XP_003060093.1
PFAMsAAA,Rep_fac_C
Model size905
Max annot lvl3041|Chlorophyta
KEGG koko:K10756
KEGG Pathwayko03030,ko03420,ko03430,map03030,map03420,map03430
KEGG ModuleM00289,M00295
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.63e-11
EggNOG OGsCOG0470@1|root,KOG0990@2759|Eukaryota,37I57@33090|Viridiplantae,34K7N@3041|Chlorophyta
DescriptionReplication factor C C-terminal domain
Cds size222
COG categoryL
BRITEko00000,ko00001,ko00002,ko03032,ko03036,ko03400
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789860.308575-UTR-P-littoralis_Contig179:430849..4314271680789860.308575-UTR-P-littoralis_Contig179:430849..431427Pylaiella littoralis U1_48UTRP-littoralis_Contig179 430850..431427 -
1680789860.3356712-UTR-P-littoralis_Contig179:431649..4317541680789860.3356712-UTR-P-littoralis_Contig179:431649..431754Pylaiella littoralis U1_48UTRP-littoralis_Contig179 431650..431754 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789860.327081-CDS-P-littoralis_Contig179:431427..4316491680789860.327081-CDS-P-littoralis_Contig179:431427..431649Pylaiella littoralis U1_48CDSP-littoralis_Contig179 431428..431649 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig179.85.1prot_P-littoralis_Contig179.85.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig179 431428..431649 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig179.85.1

>prot_P-littoralis_Contig179.85.1 ID=prot_P-littoralis_Contig179.85.1|Name=mRNA_P-littoralis_Contig179.85.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=74bp
MPHLLLHGPPGSGKTSAVQAIAGNFMAEQDCLQWLKLTASDVRGVDTMRN
QIQSFTKCFVCYRFNSSKTGCSR*
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mRNA from alignment at P-littoralis_Contig179:430850..431754-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig179.85.1 ID=mRNA_P-littoralis_Contig179.85.1|Name=mRNA_P-littoralis_Contig179.85.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=905bp|location=Sequence derived from alignment at P-littoralis_Contig179:430850..431754- (Pylaiella littoralis U1_48)
TATACCCTGTGGGTCGAGCGCTACAGACCATCGAGACTCGTGGATGGATG TCAACGGGAACGAACATGCCATTAATGCACTTTCGAATATTCATCGATTG ACGACATGCCACACCTCCTTCTCCACGGACCACCGGGCTCTGGGAAGACT TCAGCCGTACAAGCGATCGCCGGCAATTTTATGGCGGAACAGGACTGTCT TCAATGGCTCAAGCTCACCGCGAGCGATGTTCGAGGCGTGGACACCATGC GAAACCAGATTCAATCATTTACAAAGTGCTTTGTCTGTTACCGATTCAAC AGCAGTAAAACTGGTTGTTCTCGATGAAGAAGACAGCCTCACAAATCTTT CGCAGTGTGCTCTCAGGCATTTGATCGATCGATCTACAAACCTTGTACGT TTTTGTCTTTGCTGTAACTACGTCAACAAACTGTCATCCGGTATACGATC GAGGTGTACGGCGTTCAGATTTTCAGGAATTCCGAAGTCGAAAATGAGAT GCGCTCTTTTGTACGTTTTGCAAATGGGAAGGATGAAAATGTCCAGCGAA TGTTTGGATGCGGTGATTGACATGGATTTGTCGAGCCAGTTAGTAGAGTA CATGAGGCGGGTGGCCTTCCGACCCCATATCAGACGTTGGAAGTATACGT CATTCCTCGTTGAATGACACGTTTGCCGTCGCTTTCCGATCGATCTCCTC TCTTTTGTCGGAAAAAGGGTTATCTCTCGCACAAGTCAAATCGGTGCTCG CGGAAAGAGTCGTAGCGTCTGATAAGATTGGGCCCGAGCGGATGAAAATC ATCCTTGTAGAGTTTGCCAACATTGAACAGTCTTTGTCAGACAGTGGAAC GGAATCTCTTGGCATTGGAGCGGTCATCGGCGCTTTTCACGTTGACGTGG AGAGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig179:430850..431754-

>mRNA_P-littoralis_Contig179.85.1 ID=mRNA_P-littoralis_Contig179.85.1|Name=mRNA_P-littoralis_Contig179.85.1|organism=Pylaiella littoralis U1_48|type=CDS|length=222bp|location=Sequence derived from alignment at P-littoralis_Contig179:430850..431754- (Pylaiella littoralis U1_48)
ATGCCACACCTCCTTCTCCACGGACCACCGGGCTCTGGGAAGACTTCAGC
CGTACAAGCGATCGCCGGCAATTTTATGGCGGAACAGGACTGTCTTCAAT
GGCTCAAGCTCACCGCGAGCGATGTTCGAGGCGTGGACACCATGCGAAAC
CAGATTCAATCATTTACAAAGTGCTTTGTCTGTTACCGATTCAACAGCAG
TAAAACTGGTTGTTCTCGATGA
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