prot_P-littoralis_Contig179.56.6 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig179.56.6
Unique Nameprot_P-littoralis_Contig179.56.6
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length132
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig179.56.6 vs. uniprot
Match: D7FXT3_ECTSI (TFIID and SAGA subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXT3_ECTSI)

HSP 1 Score: 59.3 bits (142), Expect = 1.210e-7
Identity = 47/126 (37.30%), Postives = 57/126 (45.24%), Query Frame = 0 
Query:   27 GVQESSALASGSLDHTVKIWDAKAVCNRHGDDRDGIDSTASLAEQTKAAVTAGKNDGKDGDWAGLL--------------------PSLGGDHPSRHGPVHAFGTGDA-VYSVLFAKKNLVIASGV 131
            G  E SAL               + C R GD R+G+DS+ASLAEQ KA                                      PS G D PS +GPVH+FGT +  V++VLF K+NLVIASGV
Sbjct:  575 GRLEGSALVXXXXXXXXXXXXXASACKRDGDGRNGVDSSASLAEQMKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPWPSRG-DGPS-YGPVHSFGTRNTGVFNVLFTKRNLVIASGV 698
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig179.56.6 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FXT3_ECTSI1.210e-737.30TFIID and SAGA subunit n=1 Tax=Ectocarpus siliculo... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 14..84
e-value: 4.3E-6
score: 28.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 73..97
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 34..47
score: 8.937796
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 31..130

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig179contigP-littoralis_Contig179:272265..280280 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig179.56.6mRNA_P-littoralis_Contig179.56.6Pylaiella littoralis U1_48mRNAP-littoralis_Contig179 252431..280989 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig179.56.6 ID=prot_P-littoralis_Contig179.56.6|Name=mRNA_P-littoralis_Contig179.56.6|organism=Pylaiella littoralis U1_48|type=polypeptide|length=132bp
MVTVRKALDAIGCVKPKISCVKPTRDGVQESSALASGSLDHTVKIWDAKA
VCNRHGDDRDGIDSTASLAEQTKAAVTAGKNDGKDGDWAGLLPSLGGDHP
SRHGPVHAFGTGDAVYSVLFAKKNLVIASGV*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR001680WD40_repeat
IPR036322WD40_repeat_dom_sf