prot_P-littoralis_Contig179.38.4 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig179.38.4
Unique Nameprot_P-littoralis_Contig179.38.4
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length479
Homology
BLAST of mRNA_P-littoralis_Contig179.38.4 vs. uniprot
Match: A0A6H5KK71_9PHAE (BRCT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK71_9PHAE)

HSP 1 Score: 270 bits (690), Expect = 5.170e-84
Identity = 155/236 (65.68%), Postives = 170/236 (72.03%), Query Frame = 0
Query:   33 LLYNPQPRPRFV--VPQSSSGEQVSKRGPPLGGRGASGYWQFRTSKLSEQAPREVSQLFHGLSFYFNGRTGDKQTMHLKGAVSKYGGRTTPFMSMRGVTHVIAENLSAVKTHKAMKSLKMKVVHPDWLSRCIEEGKLLPDAPFRVVRSQKLGMDKFLGSSXXXXXXXXXXXXXXXXPDSSTCDRDDGRCRS-AQKENETIGSPRRHLSSRRKVPAAPGARG-ERRHGEKILESRDR 264
             LYNP PR +FV   P  S+  +  K+GPPLGG GASGYWQFRTSKL EQAP  VS++F GLSFYFNGR+GDKQTMHLKGAVSK+GGRTTPFMSM+GVTHVIAENLSAVKT KAMKSLKMKVVHPDW++RCI EGKLLPDAPFRVVRSQKLGMDKF GSS                  S  C+ D+GR  + AQKEN     PR H S  RK  A   A G E R G +  ESR R
Sbjct:   28 FLYNPNPR-QFVFPAPNLSNDGRSDKKGPPLGGGGASGYWQFRTSKLLEQAPAGVSEIFAGLSFYFNGRSGDKQTMHLKGAVSKHGGRTTPFMSMKGVTHVIAENLSAVKTDKAMKSLKMKVVHPDWVNRCIAEGKLLPDAPFRVVRSQKLGMDKFFGSSSSAPVSSP----------SPGCNDDEGRRNNRAQKENGKEAKPRHHRSVPRKSGAVVRAGGIEGRRGRRNRESRGR 252          
BLAST of mRNA_P-littoralis_Contig179.38.4 vs. uniprot
Match: A0A507E694_9FUNG (BRCT domain-containing protein n=1 Tax=Powellomyces hirtus TaxID=109895 RepID=A0A507E694_9FUNG)

HSP 1 Score: 85.5 bits (210), Expect = 8.210e-16
Identity = 41/109 (37.61%), Postives = 67/109 (61.47%), Query Frame = 0
Query:   69 YWQFRTSKLSEQAPREVSQLFHGLSFYFNGRTGDKQTMHLKGAVSKYGGRTTPFMSMRGVTHVIAENLSAVKTHKAMK-SLKMKVVHPDWLSRCIEEGKLLPDAPFRVV 176
            Y Q R  KL++Q   +VS++F G+  Y NG  G       +  V K+GG  +  + +R VTH+I  +LS +KT K ++ S  +K+V PDW+  C+E+GK +P+ P++V+
Sbjct:   62 YAQARDFKLAQQRAEQVSRIFQGVRVYVNGYVGTDDH-DFRQLVMKHGGDISTNLKLRSVTHMICTSLSGIKTDKFLRGSANVKIVRPDWIMDCVEQGKRVPEGPYKVI 169          
BLAST of mRNA_P-littoralis_Contig179.38.4 vs. uniprot
Match: A0A0G4IYX9_PLABS (BRCT domain-containing protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4IYX9_PLABS)

HSP 1 Score: 73.2 bits (178), Expect = 1.720e-11
Identity = 39/103 (37.86%), Postives = 59/103 (57.28%), Query Frame = 0
Query:   87 QLFHGLSFYFNGRTGDKQTMHLKGAVSKYGGRTTPFMSMRGVTHVIAENLSAVKTHKAMKSLKMKVVH---PDWLSRCIEEGKLLPDAPFRVVRSQKLGMDKF 186
            Q+F G+  YFNGR+G+   + LK  V   GGR  P +S++ VTHV+ ENLSA+K+ K + S     VH   P+W+   I+  K + +  +R V S+   +  F
Sbjct:   61 QVFQGVCVYFNGRSGEFSALQLKSFVRLCGGRIAPMLSVKVVTHVVCENLSAIKSAKVVASGPKSRVHFVRPEWILDSIKGAKRVREHAYRAVSSRTTEITSF 163          
BLAST of mRNA_P-littoralis_Contig179.38.4 vs. uniprot
Match: M5GAE6_DACPD (DNA repair protein n=1 Tax=Dacryopinax primogenitus (strain DJM 731) TaxID=1858805 RepID=M5GAE6_DACPD)

HSP 1 Score: 58.9 bits (141), Expect = 1.860e-5
Identity = 39/124 (31.45%), Postives = 66/124 (53.23%), Query Frame = 0
Query:   71 QFRTSKLSEQAPREVS----QLFHGLSFYFNGRTGDKQTMHLKGAVSKYGGRTTPFMSMRG-VTHVIAENLSAVKTHKAMKSLKMKVVHPDWLSRCIEEGKLLPDAPFRVVRSQKLGMDKFLGS 189
            Q +  ++ EQ     S    ++F GL+ + NG T       L+G +++ GG    ++  +G VTHV+A NL+  K    ++   MK+V PDW+++ +E G LLP   F +  S+   +D+  GS
Sbjct:  194 QVQNDEMEEQNEANGSAGKPKIFRGLAIHINGFT-IPSVQVLRGMITQNGGTYHAYLDKKGLVTHVVASNLTPAKV---LEFKHMKIVTPDWITKSVEAGLLLPWRDFILHPSEMDRLDEAQGS 313          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig179.38.4 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KK71_9PHAE5.170e-8465.68BRCT domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A507E694_9FUNG8.210e-1637.61BRCT domain-containing protein n=1 Tax=Powellomyce... [more]
A0A0G4IYX9_PLABS1.720e-1137.86BRCT domain-containing protein n=1 Tax=Plasmodioph... [more]
M5GAE6_DACPD1.860e-531.45DNA repair protein n=1 Tax=Dacryopinax primogenitu... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001357BRCT domainSMARTSM00292BRCT_7coord: 86..165
e-value: 2.4E-10
score: 50.4
IPR001357BRCT domainPFAMPF16589BRCT_2coord: 86..173
e-value: 1.6E-10
score: 41.2
IPR001357BRCT domainPROSITEPS50172BRCTcoord: 84..175
score: 23.04878
IPR036420BRCT domain superfamilyGENE3D3.40.50.10190BRCT domaincoord: 76..177
e-value: 2.3E-19
score: 71.6
IPR036420BRCT domain superfamilySUPERFAMILY52113BRCT domaincoord: 78..175
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 185..357
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 211..234
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..67
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 296..333
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 185..210
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 446..478
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 245..271
NoneNo IPR availablePANTHERPTHR45990DNA REPAIR PROTEIN REV1coord: 65..330

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig179contigP-littoralis_Contig179:194316..201591 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig179.38.4mRNA_P-littoralis_Contig179.38.4Pylaiella littoralis U1_48mRNAP-littoralis_Contig179 193413..201664 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig179.38.4 ID=prot_P-littoralis_Contig179.38.4|Name=mRNA_P-littoralis_Contig179.38.4|organism=Pylaiella littoralis U1_48|type=polypeptide|length=479bp
MERSRNDKDPPAIPWADFRGKSPKLGQTPPSTLLYNPQPRPRFVVPQSSS
GEQVSKRGPPLGGRGASGYWQFRTSKLSEQAPREVSQLFHGLSFYFNGRT
GDKQTMHLKGAVSKYGGRTTPFMSMRGVTHVIAENLSAVKTHKAMKSLKM
KVVHPDWLSRCIEEGKLLPDAPFRVVRSQKLGMDKFLGSSSSPPSSSSSS
SSSSSAPDSSTCDRDDGRCRSAQKENETIGSPRRHLSSRRKVPAAPGARG
ERRHGEKILESRDRRGGAGGKRGRDGSGVASAAGAAPDKSSNGLEGSRRS
KNGASNNRSVSRRTNSSTISCKRGASSSIKDGSHAGRNAPRLGGSMHDRV
GLEAPESNARLYRPGHTKNITTPRKRCRDTGEILLPPSRTITASSSLVRG
GEKRGSTIARKETVSSLPIDVTVLYSPSWTIKTHQTTAGSNNRVLSAGAQ
RLAGGEKRRRPAGGGGGKGPARFAPVTN*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001357BRCT_dom
IPR036420BRCT_dom_sf