mRNA_P-littoralis_Contig179.32.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig179.32.1
Unique NamemRNA_P-littoralis_Contig179.32.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig179.32.1 vs. uniprot
Match: A0A6H5KH49_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH49_9PHAE)

HSP 1 Score: 187 bits (475), Expect = 7.190e-57
Identity = 90/111 (81.08%), Postives = 101/111 (90.99%), Query Frame = 3 
Query:   69 AAASNTGERNVVGEQRNWEQRVTSELEVAKAWCESWGPLFEGATTQQQQLESLEEKLKGMPGEQGTRTNYQLSFTGETPFDEYPVGLTNQKPLSMDDVEKLAKKIMADQTR 401
            AAAS   E+NVVG+QRNWEQRVTSELEVAKAWCE+WGPL+EGATTQQQQL+SLEEKLK MPG+QGTRTNYQLSFTG  PFDEYPVGLTNQKPL M+DVE+LAK++M  Q +
Sbjct:    3 AAASKNEEKNVVGDQRNWEQRVTSELEVAKAWCENWGPLYEGATTQQQQLKSLEEKLKRMPGDQGTRTNYQLSFTGGAPFDEYPVGLTNQKPLRMEDVEELAKEMMVAQQK 113
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig179.32.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KH49_9PHAE7.190e-5781.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig179contigP-littoralis_Contig179:140766..143019 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog44056.XP_009033235.1
PFAMsCupin_4
Model size854
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.59e-06
EggNOG OGs2ATC1@1|root,2RZRQ@2759|Eukaryota
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-01_004190.1
DescriptionCupin superfamily protein
Cds size372
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789857.428586-UTR-P-littoralis_Contig179:140765..1408301680789857.428586-UTR-P-littoralis_Contig179:140765..140830Pylaiella littoralis U1_48UTRP-littoralis_Contig179 140766..140830 +
1680789857.4640121-UTR-P-littoralis_Contig179:142602..1430191680789857.4640121-UTR-P-littoralis_Contig179:142602..143019Pylaiella littoralis U1_48UTRP-littoralis_Contig179 142603..143019 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789857.442159-CDS-P-littoralis_Contig179:140830..1410091680789857.442159-CDS-P-littoralis_Contig179:140830..141009Pylaiella littoralis U1_48CDSP-littoralis_Contig179 140831..141009 +
1680789857.453261-CDS-P-littoralis_Contig179:142409..1426021680789857.453261-CDS-P-littoralis_Contig179:142409..142602Pylaiella littoralis U1_48CDSP-littoralis_Contig179 142410..142602 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig179.32.1prot_P-littoralis_Contig179.32.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig179 140831..142602 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig179.32.1

>prot_P-littoralis_Contig179.32.1 ID=prot_P-littoralis_Contig179.32.1|Name=mRNA_P-littoralis_Contig179.32.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=124bp
MAAASNTGERNVVGEQRNWEQRVTSELEVAKAWCESWGPLFEGATTQQQQ
LESLEEKLKGMPGEQGTRTNYQLSFTGETPFDEYPVGLTNQKPLSMDDVE
KLAKKIMADQTRGAKTVASPRCP*
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mRNA from alignment at P-littoralis_Contig179:140766..143019+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig179.32.1 ID=mRNA_P-littoralis_Contig179.32.1|Name=mRNA_P-littoralis_Contig179.32.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2254bp|location=Sequence derived from alignment at P-littoralis_Contig179:140766..143019+ (Pylaiella littoralis U1_48)
AGGGAGAGAGAAGGGGGGGGCAAGACGCATCTCACACTCCACACTTCCGA
CTTTGTCGCCACGAAATGGCGGCTGCCTCGAACACTGGAGAACGAAACGT
TGTTGGTGAACAGCGCAACTGGGAACAGAGAGTTACCTCGGAGCTCGAGG
TCGCCAAGGCGTGGTGCGAGAGCTGGGGCCCGCTGTTCGAGGGAGCCACG
ACGCAGCAGCAGCAGTTAGAATCGTTAGAGGAGAAACTCAAGGGGTAAGT
GCCGTAGGTAAACAGCTAGCTGAGAGGAGTGTGCACAGCTTGCACATCAG
CATTGTATTACTGTATGAACCGGTACAAACCTACATCGGCATGATCGCTG
CTGTAGACTATGCCCTTACTGCGGTATTCCATCTCTAGGGATAATACGAG
TACTACTCCTACAACGATGCAGCACTCCTTGTCTTGTCGATACGACTACG
TATACATACAGGTATATGTACGAGTGAAGTGCAGTGCGAGGTAATACGTA
GTACAAGTTGGGATCGAATTGAGAACACCCCCCCTCACAAAGGTACCGCG
GCGGTACCTTTGAGGGGGGGGGTACGGCGGCTCTTCTTTGCCATCAAAAT
GAATAATATATTCAAATGTGTACATAAATATACAGGCTGGTTCATGGAAG
AACCCAGAAATTTAGTCCCCAGCTATTTCTCACCCGGTTTTTTTAGGAAG
ACCCTGAAGTTTTGCACACGTACGACGTGTAGATTGGGTCAATGCGCAAC
TTCGTTGAGTGGGTGTTTTTTTCTTTTCTTTTTTCGCCAGATATCTGGGG
TCCCAGGTTTATGGGGTCTCCCTGGGTCGGTTTGGGTCGACTGGGACCCC
AGATATCTGGCGAAGAAAAAACAAGCAAAAAAACACCCACTCACACGATG
TTGCGTAGTAGGCCATAGTACGTGTTGTGTGCAAAATTTCAGACTCTGAC
TCCAACAAACAACGTAGGCAGTTTTGTTTTTGCTGCCAATCGTGTCAGAT
TTTTAAATCCTGCCAACGGTTTTGCCATCAATTTCGCTTCTACTTGCACC
ACTGGATGCTCGTGTCACAAGAAAGGGGCGGCGGCGTTCGAATTGATGGC
ATACCGTCGGTAGGATTGTAACATCCGCCAACGTTGGCAGCAAAGAAAAT
ACTGCGCCTGTTGTACCTTGGCAGATTCATCAAAATCATTTTATTTTATT
TGCCATCCGTCAAGATGTATGTACAGAGTTCGCCCAGTCCGTCAGTCAAT
CGTAACTAATAATCGCCAGAAGAGCACATAGGGCCGGAGAGGTCGCCGTA
AAAGTTTAAACTCGATATCGCGTTCCTGGATCTAGGCGGGTGACCAGAGT
AAACACTTCTCCCTGCAGCCGATTCGTGGAGATATCGAGTGCTCATTTCC
TTCCACCGAAAAGCTACCAACAAGACAGCCCCAAAGGACTGAGGGGGCTC
CATCGCATACCAACTCAATTGGTCGCATACCCTACACAACAGAACGTCCC
AATATCTCGTATGAACCCCAGAGGAACTACGCGTACCGTGCCCAACGCCG
CGTATGTATCATATCCCGATACAGCACACGAGACAACCACTTTGGGCTTG
TATCTCAAGAAAATGTTCCTGTCTGTCTTGCCGTTTTTTTTCAGGATGCC
TGGAGAGCAGGGAACGCGAACGAACTACCAGCTGTCCTTCACCGGAGAGA
CGCCGTTCGACGAATACCCCGTAGGGCTCACTAACCAGAAGCCTCTCAGC
ATGGACGACGTGGAGAAACTCGCCAAGAAAATAATGGCTGACCAAACGAG
GGGAGCCAAGACAGTGGCATCTCCGCGATGCCCGTAGATGGATGAAGAGA
AGTTTGTGCACTGGGGGGGAGGAATCGGGATTTACCATTATTTGCTTCCC
TTCGTCATTCGACCACTCACCACGCAAATTTCGAAGTGGTGCACGACTAT
TCCCACTCCCCTCTTTTGGGGGTGGGAAGGAGATGTTTTGGATATTAGAT
GTTGGGAGGGAGATCTTCAGGAAATATTTCGTTTGGCATGATGCGTATGA
TTTTGGTCATGACGCCCAGCAACAGGAGAAGGGGGTGCGGCAGATTCTTT
TAACGAAAGACGTGGTTTATTGACTTCGTCTTAATTACGTACGAGTACAG
AATTTTTCGAGAGTAGCTGGCTTCTTCTAGGCTTCCCCCCCGTGTTCCTG
CTTGGTTTTTAGAGATGCTCTCTCTCTCCTCTTTTCCTCATGAGAATGTC
CCAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig179:140766..143019+

>mRNA_P-littoralis_Contig179.32.1 ID=mRNA_P-littoralis_Contig179.32.1|Name=mRNA_P-littoralis_Contig179.32.1|organism=Pylaiella littoralis U1_48|type=CDS|length=372bp|location=Sequence derived from alignment at P-littoralis_Contig179:140766..143019+ (Pylaiella littoralis U1_48)
ATGGCGGCTGCCTCGAACACTGGAGAACGAAACGTTGTTGGTGAACAGCG
CAACTGGGAACAGAGAGTTACCTCGGAGCTCGAGGTCGCCAAGGCGTGGT
GCGAGAGCTGGGGCCCGCTGTTCGAGGGAGCCACGACGCAGCAGCAGCAG
TTAGAATCGTTAGAGGAGAAACTCAAGGGGATGCCTGGAGAGCAGGGAAC
GCGAACGAACTACCAGCTGTCCTTCACCGGAGAGACGCCGTTCGACGAAT
ACCCCGTAGGGCTCACTAACCAGAAGCCTCTCAGCATGGACGACGTGGAG
AAACTCGCCAAGAAAATAATGGCTGACCAAACGAGGGGAGCCAAGACAGT
GGCATCTCCGCGATGCCCGTAG
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