mRNA_P-littoralis_Contig179.86.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig179.86.1
Unique NamemRNA_P-littoralis_Contig179.86.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig179.86.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig179contigP-littoralis_Contig179:433079..433624 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size548
Hectar predicted targeting categoryother localisation
Exons1
Cds size333
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789856.184591-UTR-P-littoralis_Contig179:433078..4332911680789856.184591-UTR-P-littoralis_Contig179:433078..433291Pylaiella littoralis U1_48UTRP-littoralis_Contig179 433079..433291 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789856.1956203-CDS-P-littoralis_Contig179:433291..4336241680789856.1956203-CDS-P-littoralis_Contig179:433291..433624Pylaiella littoralis U1_48CDSP-littoralis_Contig179 433292..433624 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig179.86.1prot_P-littoralis_Contig179.86.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig179 433292..433624 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig179.86.1

>prot_P-littoralis_Contig179.86.1 ID=prot_P-littoralis_Contig179.86.1|Name=mRNA_P-littoralis_Contig179.86.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=111bp
AHRVPRAPFAHGPYQHLQSSRPRCGVTNEPVEREPVRNCLRQSSQAPACD
GPRCTRVECQRSFICEHLVEDAHVAGFRCVEECGVVEGPINFQRWQDATY
SRFAGDGLAH*
back to top

mRNA from alignment at P-littoralis_Contig179:433079..433624-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig179.86.1 ID=mRNA_P-littoralis_Contig179.86.1|Name=mRNA_P-littoralis_Contig179.86.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=546bp|location=Sequence derived from alignment at P-littoralis_Contig179:433079..433624- (Pylaiella littoralis U1_48)
GCGCACCGGGTCCCACGGGCACCCTTTGCTCACGGCCCATATCAACATCT
CCAAAGTTCCCGCCCCCGCTGCGGAGTGACAAACGAACCTGTCGAGAGGG
AACCCGTTCGCAACTGCCTACGGCAGAGCTCGCAAGCTCCCGCCTGCGAC
GGCCCCCGATGCACACGCGTAGAGTGCCAGCGGTCGTTCATTTGCGAGCA
CTTGGTCGAGGACGCGCACGTTGCCGGCTTTCGATGCGTGGAAGAATGCG
GTGTTGTTGAGGGACCGATTAATTTTCAGCGTTGGCAGGACGCTACCTAC
TCTCGATTCGCTGGCGACGGCCTGGCGCACTGACGTCGTGGCGTTAGGTT
CGTACGCGCGCCGCCACGTTTCGTTGACGGTGGCAACGTACAGATACGCG
TTATCGCAATATGAGAGGGCGTGTGAGATGGTTGGTGTCTCGGGGTTCAT
GTTTGTACATTTCAAACATTATTACCGAAAACGATTACCACAATTGCCCA
AAGGATGATCACGGCGGTTTATCCTTTTATCCTTGTTTGTTCCTCA
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig179:433079..433624-

>mRNA_P-littoralis_Contig179.86.1 ID=mRNA_P-littoralis_Contig179.86.1|Name=mRNA_P-littoralis_Contig179.86.1|organism=Pylaiella littoralis U1_48|type=CDS|length=333bp|location=Sequence derived from alignment at P-littoralis_Contig179:433079..433624- (Pylaiella littoralis U1_48)
GCGCACCGGGTCCCACGGGCACCCTTTGCTCACGGCCCATATCAACATCT
CCAAAGTTCCCGCCCCCGCTGCGGAGTGACAAACGAACCTGTCGAGAGGG
AACCCGTTCGCAACTGCCTACGGCAGAGCTCGCAAGCTCCCGCCTGCGAC
GGCCCCCGATGCACACGCGTAGAGTGCCAGCGGTCGTTCATTTGCGAGCA
CTTGGTCGAGGACGCGCACGTTGCCGGCTTTCGATGCGTGGAAGAATGCG
GTGTTGTTGAGGGACCGATTAATTTTCAGCGTTGGCAGGACGCTACCTAC
TCTCGATTCGCTGGCGACGGCCTGGCGCACTGA
back to top