mRNA_P-littoralis_Contig179.50.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig179.50.1
Unique NamemRNA_P-littoralis_Contig179.50.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig179.50.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig179contigP-littoralis_Contig179:229283..229950 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size668
Hectar predicted targeting categoryother localisation
Exons1
Cds size420
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789856.0427697-UTR-P-littoralis_Contig179:229282..2294321680789856.0427697-UTR-P-littoralis_Contig179:229282..229432Pylaiella littoralis U1_48UTRP-littoralis_Contig179 229283..229432 +
1680789856.065987-UTR-P-littoralis_Contig179:229852..2299501680789856.065987-UTR-P-littoralis_Contig179:229852..229950Pylaiella littoralis U1_48UTRP-littoralis_Contig179 229853..229950 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789856.0539825-CDS-P-littoralis_Contig179:229432..2298521680789856.0539825-CDS-P-littoralis_Contig179:229432..229852Pylaiella littoralis U1_48CDSP-littoralis_Contig179 229433..229852 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig179.50.1prot_P-littoralis_Contig179.50.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig179 229433..229852 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig179.50.1

>prot_P-littoralis_Contig179.50.1 ID=prot_P-littoralis_Contig179.50.1|Name=mRNA_P-littoralis_Contig179.50.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=140bp
MVGVRVLLVIDETSGTGNWGARLPSAPQFICHIQVFKTPNCCALGLLILD
LCYRVLRGCGGLPLFLSAFGGRSHRCNTTNDLMYKFCRKIVCLLSSCFFW
APVVVFRNRLGPPAGVTQEEGEHMKFSFFLHLVSAACLS*
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mRNA from alignment at P-littoralis_Contig179:229283..229950+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig179.50.1 ID=mRNA_P-littoralis_Contig179.50.1|Name=mRNA_P-littoralis_Contig179.50.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=668bp|location=Sequence derived from alignment at P-littoralis_Contig179:229283..229950+ (Pylaiella littoralis U1_48)
GGGTAACGGAGGCATGTTCCGTTGGTTGTTTGGTTTGGTATGTATTTAAG
GGAATCTGACGGGTACCGCGTGGTTTACGGCGTTCCAAGCGCCCGCCACA
GCATGAGAGGTCCTTCTTTGGTTGGTGTGTGCACAAGATGGTGACGAGTA
ATGGTGGGTGTGCGTGTGTTGCTTGTTATAGACGAAACGAGTGGTACTGG
AAACTGGGGAGCGAGGCTGCCTTCGGCGCCGCAATTTATTTGTCATATTC
AAGTATTTAAAACCCCCAACTGTTGTGCCCTTGGCCTCTTAATTCTTGAC
TTGTGCTACAGAGTACTTCGAGGTTGCGGTGGTCTGCCTCTGTTTCTGTC
TGCTTTCGGCGGCCGGAGCCACAGATGCAACACAACAAATGACTTGATGT
ACAAATTCTGCCGTAAGATTGTGTGCCTGTTGTCATCCTGTTTTTTCTGG
GCGCCAGTTGTTGTCTTTCGGAATAGGTTGGGTCCACCAGCCGGGGTCAC
ACAGGAGGAAGGTGAACACATGAAGTTTTCTTTTTTTCTCCACCTTGTTT
CTGCGGCGTGCTTGTCATAATTTATACCACTGCGAAGTACTAAGTAATTT
CTATCGCGAAAAGGGTTCAAACATGGAGCCGAGGCTTGTATACTCACGAA
ATATTCGCTTTTCGCTCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig179:229283..229950+

>mRNA_P-littoralis_Contig179.50.1 ID=mRNA_P-littoralis_Contig179.50.1|Name=mRNA_P-littoralis_Contig179.50.1|organism=Pylaiella littoralis U1_48|type=CDS|length=420bp|location=Sequence derived from alignment at P-littoralis_Contig179:229283..229950+ (Pylaiella littoralis U1_48)
ATGGTGGGTGTGCGTGTGTTGCTTGTTATAGACGAAACGAGTGGTACTGG
AAACTGGGGAGCGAGGCTGCCTTCGGCGCCGCAATTTATTTGTCATATTC
AAGTATTTAAAACCCCCAACTGTTGTGCCCTTGGCCTCTTAATTCTTGAC
TTGTGCTACAGAGTACTTCGAGGTTGCGGTGGTCTGCCTCTGTTTCTGTC
TGCTTTCGGCGGCCGGAGCCACAGATGCAACACAACAAATGACTTGATGT
ACAAATTCTGCCGTAAGATTGTGTGCCTGTTGTCATCCTGTTTTTTCTGG
GCGCCAGTTGTTGTCTTTCGGAATAGGTTGGGTCCACCAGCCGGGGTCAC
ACAGGAGGAAGGTGAACACATGAAGTTTTCTTTTTTTCTCCACCTTGTTT
CTGCGGCGTGCTTGTCATAA
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