mRNA_P-littoralis_Contig178.96.4 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig178.96.4
Unique NamemRNA_P-littoralis_Contig178.96.4
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig178.96.4 vs. uniprot
Match: D7FSG3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSG3_ECTSI)

HSP 1 Score: 414 bits (1063), Expect = 3.880e-138
Identity = 222/368 (60.33%), Postives = 263/368 (71.47%), Query Frame = 2 
Query:  173 MYLQRRTGLPAIKVEEIVDIARAAGRVIMDVYRTDPETWDSRSKTDDTPVTKADIMADKLIRTGLLNAYPDIPIISEESEQLPFEERRDYEYCWVVDPLDGTKVRKPRPDVVGADCVSHMDTVEFIRRTGDFAVMIGLSVHGKAVLGVVHAPAQDTPKTYYAVAEKGAFVLPGGEEICGDGLAGSERISARAFGVQDAGLRLAISSTRPPKSFIAACKDPVTCSIGSAALKAVAVADGTADLFPCLYPTSEWDTCAPQIIVEEAGGSVFPYHGSGEGGMADVAELL---RSRDVAAIXXXXXXXXXXXXXXXXXXXXXXXXXXGDAPSSGDMGEELPPSSIVNNPGILSYNKADLSSPSCLFLGRCST 1267
            M+L+R   LPA+KVE++VDIARAAG VIM VY TDPETW+SRSK+DDTPVTKAD+MAD+LI + L +AYPDIPIISEESE+LP+EERRDY+YCWVVDPLDGTK                    EF++RTGDFAVMIGL  HGK VLGVVHAPAQ+TPKTYYA + +GAFVL GG E+CG+GL  S+RISAR FGV+D+GLRLA+SS+RPP+ FIA+C   +T SIGSAALKAVAVADGT D+FPCLY TSEWDTC+PQ++VEEAGG V P  G+ E GMADVA LL   R+ +  A                             A + G+       S   +    LSYNKADLSSP C+FLGRC+T
Sbjct:    1 MHLERDGELPAVKVEDVVDIARAAGDVIMGVYSTDPETWESRSKSDDTPVTKADVMADELICSRLRSAYPDIPIISEESEKLPYEERRDYDYCWVVDPLDGTK--------------------EFVKRTGDFAVMIGLCFHGKPVLGVVHAPAQETPKTYYAASGQGAFVLEGGRELCGEGLGKSKRISARTFGVRDSGLRLAVSSSRPPREFIASCGSSLTSSIGSAALKAVAVADGTVDMFPCLYSTSEWDTCSPQVLVEEAGGVVLPLDGTEEVGMADVAALLLLLRAENAPAAAATSAES---------------------AATGGEASVGKKASPTGSGELRLSYNKADLSSPRCVFLGRCTT 327
[Close]
BLAST of mRNA_P-littoralis_Contig178.96.4 vs. uniprot
Match: A0A7S2USH2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2USH2_9STRA)

HSP 1 Score: 202 bits (513), Expect = 3.040e-56
Identity = 116/274 (42.34%), Postives = 161/274 (58.76%), Query Frame = 2 
Query:  179 LQRRTGLPAIKVEEIVDIARAAGRVIMDVYRTDPETWDSRSKTDDTPVTKADIMADKLIRTGLLNAYPDIPIISEESEQLPFEERRDYEYCWVVDPLDGTKVRKPRPDVVGADCVSHMDTVEFIRRTGDFAVMIGLSVHGKAVLGVVHAPAQDTPKTYYAVAEKGAFVLPGGEEICGDGLAGSERISARAFGVQDAGLRLAISS---TRPPKSFIAACKDPVTCSIGSAALKAVAVADGTADLFPCLYPTSEWDTCAPQIIVEEAGGSVFPYHG 991
            ++ + G   +K++++V+IAR A  VIM+VY +D + WD ++K+DD+P+TKAD+ A+K+I   L   YPDIPI+SEE++ +P+EER+ Y+Y + VDPLDGTK                    EF++R G F V IGL   GK VLGVV  PA D P  Y+ V  +GA +    +          E I  + F     GL L  S+   T+  + F+A  K+P T S+GS+ LK + VA G A ++P L PTSEWDTCA   IVE AGG V  Y G
Sbjct:    1 MEYKCGSTTVKIDDVVEIARKASAVIMEVYESDVKDWDIKAKSDDSPLTKADLAANKVICEELKKLYPDIPIVSEENKAIPYEERKGYQYFFCVDPLDGTK--------------------EFVKRNGQFTVNIGLCDSGKPVLGVVGVPAGDVPWYYFGVVGEGASMENDADRY-------PESIRCKTFDEDSEGLTLVASASHLTKETEDFMAQYKNPKTKSMGSS-LKLLLVAQGEAHIYPRLAPTSEWDTCAAHAIVEAAGGEVLQYQG 246
[Close]
BLAST of mRNA_P-littoralis_Contig178.96.4 vs. uniprot
Match: A0A5J4YXU3_PORPP (3'(2'),5'-bisphosphate nucleotidase CysQ n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YXU3_PORPP)

HSP 1 Score: 177 bits (450), Expect = 1.910e-47
Identity = 113/301 (37.54%), Postives = 164/301 (54.49%), Query Frame = 2 
Query:   83 LRGSRAKSTISFRCDTRRHVAMSSPLGSSSMYLQRRTGLPAIKVEEIVDIARAAGRVIMDVYRTDPETWDSRSKTDDTPVTKADIMADKLIRTGLLNAYPDIPIISEESEQLPFEERRDYEYCWVVDPLDGTKVRKPRPDVVGADCVSHMDTVEFIRRTGDFAVMIGLSVHGKAVLGVVHAPAQDTPKTYYAVAEKGAFVLPGGEEICGDGLAGSERISARAFGVQDAGLRLAISSTR-PPKS--FIAACKDPVTCSIGSAALKAVAVADGTADLFPCLYPTSEWDTCAPQIIVEEAGGSV 976
            +RGS   S I   C    +       G+    +  + G   + V E+V IA  AG+VI+++Y  D ++W+ + K DD+P+T AD+ A+ LI T L    P+ PI+SEE EQLP+E+R+ + Y W VDPLDGTK                    EFI+R GDF V I L      V+GVVH P +D  +T+YA ++ GAFV    ++           I   ++ + D  L L  S++   P++  ++A   +P T S+GS+ LK + VA+G A ++P   PT EWDT A Q+IVEEAGG V
Sbjct:    1 MRGSDGTSYIYISCSWHSYCIARLWAGTICGRMIFQAGDVEVDVLELVRIAEDAGKVILEIYSKDVDSWEQKIKADDSPLTVADLKANDLICTRLKELTPEFPIMSEELEQLPYEQRKSWSYYWCVDPLDGTK--------------------EFIKRNGDFTVNIALMHENHGVVGVVHTPVRD--QTHYAASKLGAFVRKQADQ--------PRPIKVESYAMSDPNLTLVCSASHLDPRTEEYMAQFTEPKTVSMGSS-LKFLLVAEGAAHVYPRFAPTMEWDTAASQVIVEEAGGEV 270
[Close]
BLAST of mRNA_P-littoralis_Contig178.96.4 vs. uniprot
Match: A0A250WUH9_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250WUH9_9CHLO)

HSP 1 Score: 176 bits (447), Expect = 1.120e-46
Identity = 111/262 (42.37%), Postives = 150/262 (57.25%), Query Frame = 2 
Query:  203 AIKVEEIVDIARAAGRVIMDVYRTDPETWDSRSKTDDTPVTKADIMADKLIRTGLLNAYPDIPIISEESEQLPFEERRDYEYCWVVDPLDGTKVRKPRPDVVGADCVSHMDTVEFIRRTGDFAVMIGLSVHGKAVLGVVHAPAQDTPKTYYAVAEKGAFVLPGGEEICGDGLAGSERISARAFGVQDAGLRLAISSTRPPKS---FIAACKDPVTCSIGSAALKAVAVADGTADLFPCLYPTSEWDTCAPQIIVEEAGGSVF 979
            +I VE ++ IA+ AG  I+D+Y ++   W+   K+D +P+TKAD +A+ LI   L +  P IPIISEE+  +P++ R+ YEY W VDPLDGTK                    EF++R G+F V I L   G  V GVVH P   T KTY+AV +KGA+   G     G G A  ER+ A +FG++D GL +  SS+ P K+    I     P    IGS+ LK + VA+G+A ++P L P  EWDT A  IIV EAGG V 
Sbjct:   24 SIPVERVIAIAQTAGNAILDIYNSEASKWEVELKSDQSPLTKADRVANHLICHELHSMSPHIPIISEENAIMPYDIRKGYEYYWCVDPLDGTK--------------------EFLKRNGEFTVNIALMFRGNPVFGVVHVPC--TGKTYWAVKDKGAWKRHG----TGPG-APQERLQAASFGLKDPGLVIVGSSSHPSKATEELIELFNKPELMQIGSS-LKLLMVAEGSAHIYPRLVPCCEWDTAAADIIVREAGGVVL 257
[Close]
BLAST of mRNA_P-littoralis_Contig178.96.4 vs. uniprot
Match: A0A7R9V8L1_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9V8L1_9CHLO)

HSP 1 Score: 176 bits (445), Expect = 2.150e-46
Identity = 107/261 (41.00%), Postives = 149/261 (57.09%), Query Frame = 2 
Query:  206 IKVEEIVDIARAAGRVIMDVYRTDPETWDSRSKTDDTPVTKADIMADKLIRTGLLNAYPDIPIISEESEQLPFEERRDYEYCWVVDPLDGTKVRKPRPDVVGADCVSHMDTVEFIRRTGDFAVMIGLSVHGKAVLGVVHAPAQDTPKTYYAVAEKGAFVLPGGEEICGDGLAGSERISARAFGVQDAGLRLAISSTRPPKS---FIAACKDPVTCSIGSAALKAVAVADGTADLFPCLYPTSEWDTCAPQIIVEEAGGSVF 979
            + VE+++  A AAG  I+ VY ++   W+   K D++P+TKAD MA+++I   L    P +PIISEE++ +P E R+ YEY W+VDP+DGTK                    EF++R G+F V I L      +LGVVH P     KTY+AV EKGA++  G     G+G    ERI A  FG+QD GL +  SS+ P +    F+     P T  +GS+ LK + VA+G+A ++P + P  EWDT A  IIV EAGG V 
Sbjct:   48 VPVEKVIATAEAAGEAILSVYNSEASKWEVELKADNSPLTKADTMANQIICRELQKMSPHVPIISEENKIVPAELRKGYEYFWLVDPMDGTK--------------------EFLKRNGEFTVNIALMYKDHPILGVVHVPVSG--KTYWAVKEKGAWLRQG----TGEGRK-QERIRAAKFGLQDKGLSIVGSSSHPSQQTAEFMELFDSPNTLQVGSS-LKLLMVAEGSAHIYPRMVPCCEWDTAAADIIVSEAGGVVL 280
[Close]
BLAST of mRNA_P-littoralis_Contig178.96.4 vs. uniprot
Match: D8LPX5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LPX5_ECTSI)

HSP 1 Score: 172 bits (437), Expect = 4.150e-46
Identity = 108/253 (42.69%), Postives = 146/253 (57.71%), Query Frame = 2 
Query:  257 MDVYRTDPETWDSRSKT-DDTPVTKADIMADKLIRTGLLNAYPDIPIISEESEQLPFEERRDYEYCWVVDPLDGTKVRKPRPDVVGADCVSHMDTVEFIRRTGDFAVMIGLSVHGKAVLGVVHAPAQDTPKTYYAVAEKGAFVLPGGEEICGDGLAGSERISARAFGVQDAGLRLAIS---STRPPKSFIAACKDPVTCSIGSAALKAVAVADGTADLFPCLYPTSEWDTCAPQIIVEEAGGSVFPYHGSGEG 1003
            M VY  D + WD + KT D++P+TKAD+ A+K+I   L   YP+IPI+SEE++  PFEER++Y + + VDPLDGTK                    EFI+R G F V +GL   G  VLGVV  PA + P+TY+AV  +GAFV    ++           IS + F  +D GL +  S   S+   ++FIA  K+P T S+GS+ LK + VA+G A ++P L PTSEWDTCA   IV  AGG V  + G   G
Sbjct:    1 MQVYTEDAKDWDVQIKTKDNSPLTKADLAANKVICDALTECYPEIPIVSEENKLKPFEERKEYTHFFCVDPLDGTK--------------------EFIKRNGQFTVNVGLCEAGVPVLGVVGVPAAEDPRTYFAVKGEGAFVESDKDKA-------RSPISCKEFTEEDEGLCVVASLSHSSPETEAFIAKYKNPSTTSMGSS-LKLLLVAEGKAHVYPRLAPTSEWDTCASHAIVTAAGGQVLQHAGGKAG 225
[Close]
BLAST of mRNA_P-littoralis_Contig178.96.4 vs. uniprot
Match: A0A2T2VJV5_9BACT (3'(2'),5'-bisphosphate nucleotidase CysQ n=1 Tax=Bacteroidetes bacterium SW_10_40_5 TaxID=1919112 RepID=A0A2T2VJV5_9BACT)

HSP 1 Score: 172 bits (437), Expect = 5.080e-46
Identity = 102/259 (39.38%), Postives = 149/259 (57.53%), Query Frame = 2 
Query:  218 EIVDIARAAGRVIMDVYRTDPETWDSRSKTDDTPVTKADIMADKLIRTGLLNAYPDIPIISEESEQLPFEERRDYEYCWVVDPLDGTKVRKPRPDVVGADCVSHMDTVEFIRRTGDFAVMIGLSVHGKAVLGVVHAPAQDTPKTYYAVAEKGAFVLPGGEEICGDGLAGSERISARAFGVQDAGLRLAISSTRPPK---SFIAACKDPVTCSIGSAALKAVAVADGTADLFPCLYPTSEWDTCAPQIIVEEAGGSVFPY 985
            +++ I + AGR ++++Y +D E WD  +K+DD+P+TKAD +A+  I   L   YP IPIISEE++++P+EER++YEY W+VDPLDGTK                    EFI+R G+F + I L  H +AV G+++ PA    + +YA    GAF+     E           +S   F  +   LRL  S +   +   +F+   +DP   S+GS+ LK + VA+G AD++P + PT EWDT A Q IVEEAGG V  Y
Sbjct:   10 DLIQIGKEAGRKVLEIYNSDAENWDVSAKSDDSPLTKADKVANDYICEELKRLYPSIPIISEENKEIPYEERKNYEYFWLVDPLDGTK--------------------EFIKRNGEFTINIALIKHREAVSGLLYTPALG--RMFYAEKNNGAFLWDEHGE--------KHNLSVDEFSKKAKNLRLVCSRSHMNEETHNFVDQYEDPQLVSMGSS-LKFMLVAEGKADIYPRIGPTMEWDTGAAQAIVEEAGGKVLNY 237
[Close]
BLAST of mRNA_P-littoralis_Contig178.96.4 vs. uniprot
Match: A0A383WIR4_TETOB (Uncharacterized protein n=2 Tax=Scenedesmaceae TaxID=3086 RepID=A0A383WIR4_TETOB)

HSP 1 Score: 173 bits (438), Expect = 1.050e-45
Identity = 114/266 (42.86%), Postives = 152/266 (57.14%), Query Frame = 2 
Query:  203 AIKVEEIVDIARAAGRVIMDVYRTDPETWDSRSKTDDTPVTKADIMADKLIRTGLLNAYPDIPIISEESEQLPFEERRDYEYCWVVDPLDGTKVRKPRPDVVGADCVSHMDTVEFIRRTGDFAVMIGLSVHGKAVLGVVHAPAQDTPKTYYAVAEKGAFVLPGGEEICGDGLAGSERISARAFGVQDAGLRLAISSTRPPKS-------FIAACKDPVTCSIGSAALKAVAVADGTADLFPCLYPTSEWDTCAPQIIVEEAGGSVF 979
            +I VEEIV+I+  AG+ IM +Y +     +   K D++P+TKAD  ++++I  GL    P +PIISEE++ LP+  R+ Y+YCWVVDPLDGTK                    EFI+R G+F VMIGL     AVLGVVH P     KTYYAVA KGA+V         DG   +++I A+ F + D GL L  S++    S       F+   + P   S GS+ LK + VA+G A ++P L PT EWDT A  IIV+EAGG V 
Sbjct:   24 SIPVEEIVNISEQAGKAIMQIYNSADHGVEL--KGDESPLTKADTESNRIICEGLQRVSPHVPIISEENKTLPYSIRKGYQYCWVVDPLDGTK--------------------EFIKRNGEFTVMIGLVQGSAAVLGVVHVPVSG--KTYYAVAGKGAYVRDA------DGT--TKQIHAKEFSMTDPGLVLVGSTSHANPSNNTAMRDFVELFESPTFNSYGSS-LKLLMVAEGDAHVYPRLAPTMEWDTAAADIIVKEAGGVVL 256
[Close]
BLAST of mRNA_P-littoralis_Contig178.96.4 vs. uniprot
Match: K8YV05_NANGC (3'(2'), 5'-bisphosphate nucleotidase n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8YV05_NANGC)

HSP 1 Score: 169 bits (429), Expect = 1.020e-44
Identity = 102/272 (37.50%), Postives = 146/272 (53.68%), Query Frame = 2 
Query:  188 RTGLPAIKVEEIVDIARAAGRVIMDVYR-TDPETWDSRSKTDDTPVTKADIMADKLIRTGLLNAYPDIPIISEESEQLPFEERRDYEYCWVVDPLDGTKVRKPRPDVVGADCVSHMDTVEFIRRTGDFAVMIGLSVHGKAVLGVVHAPAQDTPKTYYAVAEKGAFVLPGGEEICGDGLAGSERISARAFGVQDAGLRLAISS---TRPPKSFIAACKDPVTCSIGSAALKAVAVADGTADLFPCLYPTSEWDTCAPQIIVEEAGGSVFPYHG 991
            + G   +  +++V IA+ AG  IM +Y   D  +WD ++K+D++P+T AD+ A+ LI   L   YP IPI+SEE++ LP+EER ++ + W VDPLDGTK                    EF++R G F V IGL      + GVVH PA +  KTYY     GAFV    E            I  + F  +D  L +  S+   T   ++FI+  ++P   ++GS+ LK + VA+G A ++P L PT EWDTCA   +VE AGG V    G
Sbjct:    4 QAGAVKVLAKDVVSIAKTAGDAIMSIYAFPDTVSWDVKAKSDNSPLTAADLAANNLICASLKEKYPSIPIVSEENKMLPYEERSNWPFYWCVDPLDGTK--------------------EFLKRNGQFTVNIGLCQGKSPIFGVVHVPAMEPAKTYYGAKGHGAFVEIADEPPI--------PIKVKEFSEKDPNLAVVASASHNTPETENFISKYQNPTLKALGSS-LKLLMVAEGEAHVYPRLAPTCEWDTCASHAVVEAAGGEVLQAEG 246
[Close]
BLAST of mRNA_P-littoralis_Contig178.96.4 vs. uniprot
Match: A0A7S3F848_9VIRI (Hypothetical protein n=1 Tax=Prasinoderma singulare TaxID=676789 RepID=A0A7S3F848_9VIRI)

HSP 1 Score: 169 bits (429), Expect = 1.140e-44
Identity = 108/263 (41.06%), Postives = 145/263 (55.13%), Query Frame = 2 
Query:  206 IKVEEIVDIARAAGRVIMDVYRTDPETWDSRSKTDDTPVTKADIMADKLIRTGLLNAYPDIPIISEESEQLPFEERRDYEYCWVVDPLDGTKVRKPRPDVVGADCVSHMDTVEFIRRTGDFAVMIGLSVHGKAVLGVVHAPAQDTPKTYYAVAEKGAF--VLPGGEEICGDGLAGSERISARAFGVQDAGLRLAIS---STRPPKSFIAACKDPVTCSIGSAALKAVAVADGTADLFPCLYPTSEWDTCAPQIIVEEAGGSVF 979
            I  E ++ IA AAG VI++VY +  E W  ++K D +P+T AD  A++LI   L    P +PI+SEE++ + +E R+ Y+Y W VDPLDGTK                    EFI+R G F V I L    + VLGVVH P Q+   T++A   +GAF     GGE+          ++    F   D GL +  S   S    +SFIAA K P   S+GS+ LK + VA+G A ++P L PT EWDTCA QI+VEEAGG V 
Sbjct:   17 IDAEAVIAIAEAAGDVILEVYNSPTEDWAKQTKGDGSPLTIADQRANELICERLAQLAPHVPIVSEENKAVAYETRKGYQYSWCVDPLDGTK--------------------EFIKRNGQFTVNIALLRGERPVLGVVHTPCQEN--THWAEKGRGAFKRASKGGEDT---------KLECATFSEADEGLAVVASASHSNEATESFIAAFKSPTLTSMGSS-LKLMLVAEGKAHVYPRLAPTCEWDTCASQIVVEEAGGCVL 247
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig178.96.4 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FSG3_ECTSI3.880e-13860.33Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2USH2_9STRA3.040e-5642.34Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A5J4YXU3_PORPP1.910e-4737.543'(2'),5'-bisphosphate nucleotidase CysQ n=1 Tax=P... [more]
A0A250WUH9_9CHLO1.120e-4642.37Uncharacterized protein n=1 Tax=Chlamydomonas eust... [more]
A0A7R9V8L1_9CHLO2.150e-4641.00Hypothetical protein n=1 Tax=Chlamydomonas euryale... [more]
D8LPX5_ECTSI4.150e-4642.69Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A2T2VJV5_9BACT5.080e-4639.383'(2'),5'-bisphosphate nucleotidase CysQ n=1 Tax=B... [more]
A0A383WIR4_TETOB1.050e-4542.86Uncharacterized protein n=2 Tax=Scenedesmaceae Tax... [more]
K8YV05_NANGC1.020e-4437.503'(2'), 5'-bisphosphate nucleotidase n=3 Tax=Monod... [more]
A0A7S3F848_9VIRI1.140e-4441.06Hypothetical protein n=1 Tax=Prasinoderma singular... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig178contigP-littoralis_Contig178:434071..441913 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FSG3
PFAMsInositol_P
Model size1799
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons6
Evalue2.01e-142
EggNOG OGsCOG0483@1|root,KOG2951@2759|Eukaryota
DescriptionInositol-1-monophosphatase
Cds size1128
COG categoryG
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig178.96.4prot_P-littoralis_Contig178.96.4Pylaiella littoralis U1_48polypeptideP-littoralis_Contig178 434216..441387 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789855.7670982-UTR-P-littoralis_Contig178:434070..4342151680789855.7670982-UTR-P-littoralis_Contig178:434070..434215Pylaiella littoralis U1_48UTRP-littoralis_Contig178 434071..434215 +
1680789855.8396115-UTR-P-littoralis_Contig178:441387..4419131680789855.8396115-UTR-P-littoralis_Contig178:441387..441913Pylaiella littoralis U1_48UTRP-littoralis_Contig178 441388..441913 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789855.776835-CDS-P-littoralis_Contig178:434215..4343531680789855.776835-CDS-P-littoralis_Contig178:434215..434353Pylaiella littoralis U1_48CDSP-littoralis_Contig178 434216..434353 +
1680789855.7883-CDS-P-littoralis_Contig178:436639..4367491680789855.7883-CDS-P-littoralis_Contig178:436639..436749Pylaiella littoralis U1_48CDSP-littoralis_Contig178 436640..436749 +
1680789855.7995074-CDS-P-littoralis_Contig178:437201..4373491680789855.7995074-CDS-P-littoralis_Contig178:437201..437349Pylaiella littoralis U1_48CDSP-littoralis_Contig178 437202..437349 +
1680789855.8092287-CDS-P-littoralis_Contig178:439329..4395261680789855.8092287-CDS-P-littoralis_Contig178:439329..439526Pylaiella littoralis U1_48CDSP-littoralis_Contig178 439330..439526 +
1680789855.817689-CDS-P-littoralis_Contig178:439886..4399831680789855.817689-CDS-P-littoralis_Contig178:439886..439983Pylaiella littoralis U1_48CDSP-littoralis_Contig178 439887..439983 +
1680789855.8269618-CDS-P-littoralis_Contig178:440949..4413871680789855.8269618-CDS-P-littoralis_Contig178:440949..441387Pylaiella littoralis U1_48CDSP-littoralis_Contig178 440950..441387 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig178.96.4

>prot_P-littoralis_Contig178.96.4 ID=prot_P-littoralis_Contig178.96.4|Name=mRNA_P-littoralis_Contig178.96.4|organism=Pylaiella littoralis U1_48|type=polypeptide|length=376bp
MSSPLGSSSMYLQRRTGLPAIKVEEIVDIARAAGRVIMDVYRTDPETWDS
RSKTDDTPVTKADIMADKLIRTGLLNAYPDIPIISEESEQLPFEERRDYE
YCWVVDPLDGTKVRKPRPDVVGADCVSHMDTVEFIRRTGDFAVMIGLSVH
GKAVLGVVHAPAQDTPKTYYAVAEKGAFVLPGGEEICGDGLAGSERISAR
AFGVQDAGLRLAISSTRPPKSFIAACKDPVTCSIGSAALKAVAVADGTAD
LFPCLYPTSEWDTCAPQIIVEEAGGSVFPYHGSGEGGMADVAELLRSRDV
AAIAAAATAGAAGAASTNVGGGAGAASAAGDAPSSGDMGEELPPSSIVNN
PGILSYNKADLSSPSCLFLGRCSTH*
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mRNA from alignment at P-littoralis_Contig178:434071..441913+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig178.96.4 ID=mRNA_P-littoralis_Contig178.96.4|Name=mRNA_P-littoralis_Contig178.96.4|organism=Pylaiella littoralis U1_48|type=mRNA|length=7843bp|location=Sequence derived from alignment at P-littoralis_Contig178:434071..441913+ (Pylaiella littoralis U1_48)
ACATGCTGGCCGGCAAGCACGGCTCAACCATCCTTGCACGACACCAAACA
CGCCACGTGGCTGGAACACACTGCATACATTTCTACGTGGCTCGAGAGCC
AAAAGTACAATCTCCTTTCGCTGCGATACCCGCCGTCACGTTGCTATGAG
CTCACCTTTAGGTTCGAGCAGCATGTATCTCCAGCGTCGTACAGGGCTAC
CGGCTATCAAGGTTGAAGAAATTGTTGACATCGCCCGTGCTGCAGGGCGA
GTGATTATGGACGTGTACAGGACAGACCCCGAGGTGAGGTAGTGAGAGGT
GTGCCTATAAATACAGCAGTACTGCCGACGGTACCGGTGCAACCACCAGC
GTTCTTCGAATGCAAGATACATCACACAGCAGTGTGAAGAAAAAAAGTGC
GGCGTAACATTTCACTGACTCTCCTCGCACATACACAAACTTACGGCTGC
AAGGCTCAGCAAGGCGATGGTGGAGTCTACATTGCTTGTGTGCCACGGCA
CTACTGCTGCACATCTCGTTTACTCTGTCCAGTTGTACGTTGTGCGAGCG
GGCGTGATGTACTGTTAATGGTGAACAGAACGGCGGTAATTTTTTCAGAC
TAAACGCAAGATAGTAAGGCTAGGTCTTCTCACAAAATCAAATCCGAGCT
TCGAATCCAAATCTGGAAAAAAGACTGAAAGATCCAGCCCAGATCTGGTG
TCGTTTGCCCAAGTGTCTTATCCGGAAACTGCAGAAATCGAAATCAAATC
CCAACAACCAGCACTCAGCGGTCAGCTCAACCTCATTGAACAGCGTTCGT
GCTGACATCCCACATTGTTACTTGCTGCTGCTGTTGATGCAGCAGCGGCG
GGCGCGGGAAGTGTGCGAAATGATTAGTAGTCTAATGCTGTTGTTGAGCG
GAGGGTGTACTTGCTGCTGCTGCTGTGTTGTTTGTTTCTGACCGCTAGCA
TCGTCTTGCTCGGACATTGTAGAGCGTAGTCTCTCCTTGGATCTGGTGGT
ATTCGGCAGTCTTGCTGTCTGTGTCTTCCTTTTTTGGCTCTTTTTCTTTT
CTTCTTCACAGTCCCGCGCATGACGTACTTGAGCCCGTTTCGCGTGTTCG
TCTGCTTCTTGAGCGCTCGAGCAGGCCAGGTACGCACAAAACGTGTTCCT
TTTCGCTAACTTGGGATTCAAATAAATGCAAAATCATTTAATTGAATCCC
AAGTTCAGGATCGGAACACTTAAAAAAAGACGGGAAAATCCGAGGTCTGC
TGCGAGGCGGGAGGTTATTTCAGCCTATCACAGGATGTGTTCTTTGGATC
TTTCATTCTTTTTTTTTCAGATTTGGATTCGAAATTGGGATTTGATTTCG
TGATAAGACCCAGCCTGAGGGCCCAAAACTCGAAACCACGCCCCACCGCG
TAAGGAGCGATCTTAGTGGCGAATACGGTTGAGAACACTCCTCTGCAGCA
GCGATATATGTGTTTGCTCAGATTTGCTGCCAGGGAGGAGATATCGAGGG
CTAAGCAGTAGGTCCGAAACTCCGCAATCCGGACCGACACCAAATCTTTG
ATCATGTTGTACTCGCCGCCATGGGCGCCAATCTTTTGAAAATAGGTCAT
TCGAGGTAGCTGTGCGCATGATTATTCCTGTTGACCCGCGGATTAGGAAA
GTTGGGTCAGTGGCGGCGAGCAGAGTAGTAGCGATGAGTACAGCAGTGGA
AGATGCTTTTCGGTTTCGGTCCAGTTTGCGGACTTCTTGAGCCACTACTG
TACCGCGGCCTTCGGTATCTCAGGCCCAAAACTTGTAGCAGATCTGAGCA
TGCCAATACGCACATCGCTTGCTGCAAAGTATTCTCTACCGAAATCACCA
CCAAGATCGCTCTTCGCACGCTGAGAAATCTCGTTTGAGCCTCATCAAAA
TACCCTGTTGACCTGATTTTATAGTTGTGGAAACGTTTTTCTTTCATTTT
CGGAAGGATATTGGAGGTAGACTAAGTGATACCTGGTATGCATGTAATGA
AAAGCCCCGACCGCCGCTGTGTGCGATAACTAGTAGATTTTCTCCTTCCC
GACGCCCTCCTACCGTCTAGTGTGAGGTTCCCAGTATGTGATTATGAGGG
CTCCTTCGCTGTTTTTTCAAATTTGTGCCTTCGACTGTCCTCTGATAGTA
CCTGAAGTGCAGACTAAAAACCGAAAATAAAAGTCAGTTTGTACACAGCA
TATTAGCGGTATTTTTGCCCGGAAGATTATGCTGTTCCCCGGCCGAGCTG
CACTATGAAACCCTACATTGCATCAGTACAGGGAGTCAAGATTCATCCCC
CCTGAGTCCGTCTGTCCCAGTCGGGCTTTTCTTCTTTTTATACGTAGACT
CGTAGCGAAAATGCAAAAGTCGTGTGATTCGCATTTTTCCCCTGGAGCTA
CTTTTATTACCCGGCCGGACTGATGCATGGAACCCATCAGTAAGGAAGTC
AAGGTTGACCCCCCCCTGATCCCAGTCTGCCTCCGTGAGGGTTTCCTCCT
TTTCGACATTGCATTGCAATGGCGTTATCGAAAAGTAAGCGTGCGAACTA
ACAAACTCTGCTTTTTCAGACGTGGGACAGTCGTTCCAAAACGGACGACA
CGCCCGTCACGAAGGCAGATATTATGGCGGACAAGCTCATCCGCACTGGG
CTGCTCAATGCCTACCCGGACATACCAATGTGAGAATTTTGCTGGGCGAC
GGGCGCTCGCGAGTCAAACATTGCTGCTACACTCCTGATACGGTTTACTT
GTTGGTTTGACTCCGATCAATGGCGCTGCTGCTATATACGTACACACTCG
CCCCCCCCCCCCGTATCACGCCGCCAGTTATTTCCATGGTCATTTCGCAA
CGGCTCTGTCCTCGGCGTAGCCCAATACCTTCGATATTCTCTTCTCTTAT
ATGTCTGCCTTTCGGGAGCAGCCGATAGTTCAATAGTTACGTTGCATGAC
GCCAACGTCTCGGCAGAAGGAGCCGAGCAATGAGTGTACACTGAGATTAC
TTCCCGATGACACACCGCAGTACGGCCGTTCGCTGAAGGAAGGGAGAGCG
CTGGACCCACACCGCCGCATGCTGTGCTGCTGTCATTTCCGTGTGTGTGC
CGTGCTTGCTGGCTCTATCGCTTGCTGTCAGAATATCGGAGGAAAGCGAG
CAGCTGCCGTTCGAAGAGCGGCGGGATTACGAGTATTGCTGGGTGGTCGA
CCCTTTGGACGGGACAAAGGTTAGAAAGCCGAGGCCGGATGTTGTGGGTG
CTGATTGCGTCAGTCACATGGATACTGTGGTAAGTGCGGCGGGAAGTTGT
GCGAAGTATAAGACAGCCCGCGCACCCAAAGCTTCCTTCCTGCCTGGATA
GAGGATCGCCACCGAAGCACCGAGGCTGTGTGCCTCGCACCTCTAGGCTT
CTCCCCAGCCGGTTGCCGTCCTTGTGCGCTAATTGCGTGGCGAGGGTGAC
CGGTATAAGTGTTCAGGAGCAAACATCCACATCAGAAATCTGTGGCGAGG
TGGCACGCGTTTGGCCCAAACATGCGTGTGATCTCGCACACATTTGTTTT
CACCCGGATTTTTGCTTCTCCTGGCATAGACCAGTCATTCTCCACGCACA
ATAAACCCACGACGATTAGAACCGGCGCGGAGGAGCCAAGAAATACGAGG
CTTACAGTCCTGGTGGTTTGGTGGTGTAGTGTGGGGTTAGTCGTTTTTGT
CATACAGGGGGAACAGACGATGCGCGATTGTGGCACAGATGTTGAAATCC
GTGTGACGAAAACCCGTACCCATCACAGCCAGCCTGATTTCGTTTGTAAC
GAAGATGCCCTGTCTTGTTTGGTGGCCGTTGTTGCCATATTGTTTCTCAC
TTTTGGTCATGGTGTAAAATAAATTCTTCGTGCTTCATCGTGACCAGAAA
CGACAGTAATTAATACGAAGACGGACCAGAATACTTCGAAGTATCCAGCT
AAAAATCACCATCTATTTTCACAACCATCTCTGTATCTATTACCGTTGCT
GTTGGTTCCGCTTATTTTGTTCGTTTCAGTAGTTCATTTTTTGCTATTGT
CGTCATCGTCGTCATCGTCGTCGTCGTCGTCTCTGCCGATGTTGCTGAAA
CAGCAGAGGCCGAAATCGCATTTGCAAATATAGGCCGAAATGAACCTAGG
GCGATATGTCATTGGCCACGGCAGGCTGCCGCGCGACGCTGGCCAATTTT
CCGCAAGGTGAACCCGGTTGTGGCTACTCAACTCGCGGAGGTTCCCGACT
TTCACACGAATACACGCCGTTCACGCGAAAATTGCTGGAAATACACGAGC
TCCCATAGAAAAGAACGTCCACGCCCGTCACTGCGTAGTTCGATTCTCCG
CTACCGACAGCCCTGTTCACGTCATTATATTGCTCATTCACGTTCATACA
AGAAGATTGATGAATTGTTTCTGCCTTCCTCTTTCTGTCTCCCTCTCTCC
CACAAGTATAAAATGATACACTCAGCATCACTTGTCAGCGTGAAATATTC
GGGTTGCAAAGTGCAGCAGGCGGAGTGCTTTCCTCGGTAGGGTGCAGCCA
CCGCGGTTTCGATTTGTACCATTGGATGAAAAACCAGCTCATGCCTTCCA
CGTCAACTTTGTCTTATCTATCTTAATGTCTTATTTTGCTTTGAACGAGT
ATCTTTCATGAGGTCGGCATCGTCGCTCATGATCGTGCACAGCTTAGCTG
AGTGAGGCTTCGAGTGGCTTGACACCGAACGGCTTCCATGAGAGACAGAG
AGTAGAGGGAGAGCGAGAGAGCGAGAGAGGGAGAGAGAGATAAATGTACC
ACAAATGAAAATATAAAAAAGAAGGAACCGTCGTCGAGTGCATAGCATTG
AACTGCGCGGCGACAGGTGAGGTCCGTTCGTCGAAGAGTCAGTGTATTTC
GGGCCATTTTTCTGATAGGGGGAGTATGAAAATCGCGTAACCCCATTATT
TGAGTAGCCACAACCCAGTGTACCGGGCAGAAAAGTGGCCAGCAATAGGT
GACGGCCTGCCTTGGCCAATGGCACGGCGTCCGGGGGTCATTTCGGTCTC
GCTAAAAGAAGGGTATCCGGAATGACCGAAACGTAGTCGGATACGCCTGA
TATTGTCTACTGCTCCCGTTGATATTGCTGTTCGTATTCTATTCCTGGCT
CCATCTCGAGGATATAATTTGTTGCCCTCGTCCTCGTCGTCGTCCTTCCT
GTTGATATTGGTATCGCTGTTGTTGTGCTGTTGTTGTTTCGTTTATTGTC
CATCACAAGGAATTCATTCGGCGAACCGGAGACTTCGCCGTCATGATTGG
TCTGTCCGTGCACGGCAAGGCCGTGCTCGGCGTCGTGCACGCACCTGCGC
AGGACACACCGAAGACGTACTACGCCGTCGCAGAGAAGGGCGCCTTCGTT
TTGCCGGGTGGTGAAGAGATATGCGGGGATGGACTGGCGGGTAGCGAACG
CATCAGGTAAAAATGTGGTGTGCCCTTATCATTTCAACGGTGCACGCCAC
GCTGGCCAGCCCTTTGTCCGGCCAACAATGCATGCCATGCTCGCTAGTCC
GCCACCCTATCCTACCAGCCATGATGCGATGGCTAGCCCTCTCCCTAACC
ATCCAGTTGACTAGCCCTTTTACTACCGCCCATACACGCCACGCTGACTA
TCATAGCCCTCAATCTCATGGACTATGAGCACCTCGCCGGCCACCGCAGC
CGTGAAACCGTCGACCACAGCCACCGAGCTGGCTAGCTATTTTATATACC
GATATATTACCCCGCGATTTGTATAGCAGTAGCCCTATACCATTAACCTT
TCTTACACGCGTCCAGTGCTCGAGCCTTCGGAGTGCAGGACGCCGGGCTG
AGGCTGGCGATATCCAGCACGAGGCCCCCGAAGAGCTTCATCGCCGCCTG
CAAAGATCCAGTGGTGAGGGAAACGAAACGACGCCACGTCACGCCATGAT
ACGCGAGGCCACGGCTGTCTTGCTGCAGCTTTCACTTCCAAGCCTTTGCA
TTCAGACTTTCAGCCCTTGGTGTTCAGACTTGAGGCTCATCAGACACAGA
CAGACTCATCCAAACATAAGGCCCCGCGGCAGGGAAATGGAAGGCCACGC
CAAGCCACGCTGCGCCAGCTTAGAGCTGTAAATATGACCCCGGTACCCAA
CTCATCAAACGCAAATATCCCGAGCTTGCGAGACGAAGCACTGCTACGCC
ACGCCACCCCTGTCTTTTCGGTCACGCAACAGGTTATCTACTAAACCTGT
TACTGAAAAGTATCTACTCACGAGATCCCGAGGCAAGCAAACAATGGGCC
ACGCCACGCTCCTTCTTCTGCCGTACAGCCATGTACTATTCCTTGTGCTT
GAATCCGCCGAAAAACAAAATGCACCATTCTGGCATGCGCGCTCTGGTGA
TGTTGATCAAACACTCGACGCGACATTTGTGTGCTGCCTTTATGAGACGG
TCGACTACAGAAGGGCTATCACTGAATATTCCATATATCAAACAAGGATT
AGCGGAAAATTCAACCGCCTGTCATGCCTACAACGTGTCCTCGTTCAGGG
CCCTTGAGTTGACTTGCATTCCTATAATAAACGGTGAAGGAACTCCCCGG
CGGATGGCATTTCCACGGCTTTAAGGTGGAAATGCTCCACTATGTGAATC
CGGGCGAAGATACAGTCCCCTCCCCCACTACCCCTACGGACAATCCCCTC
CCTCTTCCCACGAACCCCTGCATACGATGCAGGCATGCAGCATCCATCGG
ATCGGCCGCTTTCAAGGCGATCGCCGCGGCAGACGCTTTTTGCACTTACC
AACCTTCGCTCCCTTTCGACCCCTATCATACGCCCTGCCAATAGATTCCC
CCTCCATTTCACGAAATCCTCCTGTGCAGACGTGCAGCATCGGATCAGCC
GCTCTGAAGGCGGTCGCCGTGGCAGACGGGACGGCGGACTTGTTCCCTTG
CTTGTACCCCACGAGCGAGTGGGACACGTGCGCCCCCCAGATCATCGTGG
AGGAAGCAGGCGGGTCCGTCTTCCCCTACCACGGCTCGGGAGAAGGCGGC
ATGGCCGACGTAGCAGAGCTGTTGCGTTCTAGAGACGTGGCTGCTATCGC
CGCCGCCGCTACCGCTGGTGCTGCCGGTGCTGCTTCTACCAATGTTGGTG
GCGGTGCTGGTGCTGCTAGTGCTGCTGGTGATGCCCCCAGTTCGGGAGAT
ATGGGAGAAGAATTGCCACCCTCATCAATCGTCAACAACCCTGGTATTCT
TTCGTACAACAAGGCCGACCTGTCGAGCCCGTCTTGCTTGTTTTTGGGGC
GCTGCAGCACCCACTAGGGATGTACTTCGAAGTAGTAGGCAAGAAGAGAG
GCTTTGACGTGCGTATGCATCTCATTCAGAGCGATTGGCATGTAGAGCGT
TTGTGTAAACCGTTTTTTTTCTGGTGATTTGGTTGTTGTAGGGCTTTTCT
GAAATTAAGGTTTCATAATGAGGGGGCTATACTGTACCACATTTGGTTTT
TATCATATTTTCAGACATACGCCACTCTGTGTTTACATACAAGACGTATC
GCAGCCTAGTGCTCCCCTGCCGGCTGACTATTTGCGCTCTCCCTGACATA
ACACAAGGTTTGCATTTGGTGGAATATTTTGTAGAATTACGGCTGTTGTC
TGACTTGATGCTCATCAAGCGCCGGGTTGTCCGCTGCACAAACGCTGCAG
GTGTGTGTGCATGTTTGTGTTTTATGTGTGTCCCGCCGGCTGTGATACAC
CGTCGTGCCGCTCGCTGTCTGCCGATTTGCACAGCATGTATATTTTTCTT
CAAAAATATTTCGTTTGCTCGAAATGCTCGTATGAATATTGTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig178:434071..441913+

>mRNA_P-littoralis_Contig178.96.4 ID=mRNA_P-littoralis_Contig178.96.4|Name=mRNA_P-littoralis_Contig178.96.4|organism=Pylaiella littoralis U1_48|type=CDS|length=1128bp|location=Sequence derived from alignment at P-littoralis_Contig178:434071..441913+ (Pylaiella littoralis U1_48)
ATGAGCTCACCTTTAGGTTCGAGCAGCATGTATCTCCAGCGTCGTACAGG
GCTACCGGCTATCAAGGTTGAAGAAATTGTTGACATCGCCCGTGCTGCAG
GGCGAGTGATTATGGACGTGTACAGGACAGACCCCGAGACGTGGGACAGT
CGTTCCAAAACGGACGACACGCCCGTCACGAAGGCAGATATTATGGCGGA
CAAGCTCATCCGCACTGGGCTGCTCAATGCCTACCCGGACATACCAATAA
TATCGGAGGAAAGCGAGCAGCTGCCGTTCGAAGAGCGGCGGGATTACGAG
TATTGCTGGGTGGTCGACCCTTTGGACGGGACAAAGGTTAGAAAGCCGAG
GCCGGATGTTGTGGGTGCTGATTGCGTCAGTCACATGGATACTGTGGAAT
TCATTCGGCGAACCGGAGACTTCGCCGTCATGATTGGTCTGTCCGTGCAC
GGCAAGGCCGTGCTCGGCGTCGTGCACGCACCTGCGCAGGACACACCGAA
GACGTACTACGCCGTCGCAGAGAAGGGCGCCTTCGTTTTGCCGGGTGGTG
AAGAGATATGCGGGGATGGACTGGCGGGTAGCGAACGCATCAGTGCTCGA
GCCTTCGGAGTGCAGGACGCCGGGCTGAGGCTGGCGATATCCAGCACGAG
GCCCCCGAAGAGCTTCATCGCCGCCTGCAAAGATCCAGTGACGTGCAGCA
TCGGATCAGCCGCTCTGAAGGCGGTCGCCGTGGCAGACGGGACGGCGGAC
TTGTTCCCTTGCTTGTACCCCACGAGCGAGTGGGACACGTGCGCCCCCCA
GATCATCGTGGAGGAAGCAGGCGGGTCCGTCTTCCCCTACCACGGCTCGG
GAGAAGGCGGCATGGCCGACGTAGCAGAGCTGTTGCGTTCTAGAGACGTG
GCTGCTATCGCCGCCGCCGCTACCGCTGGTGCTGCCGGTGCTGCTTCTAC
CAATGTTGGTGGCGGTGCTGGTGCTGCTAGTGCTGCTGGTGATGCCCCCA
GTTCGGGAGATATGGGAGAAGAATTGCCACCCTCATCAATCGTCAACAAC
CCTGGTATTCTTTCGTACAACAAGGCCGACCTGTCGAGCCCGTCTTGCTT
GTTTTTGGGGCGCTGCAGCACCCACTAG
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