mRNA_P-littoralis_Contig178.9.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig178.9.1
Unique NamemRNA_P-littoralis_Contig178.9.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig178.9.1 vs. uniprot
Match: A0A835YTB4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTB4_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 5.110e-15
Identity = 50/89 (56.18%), Postives = 59/89 (66.29%), Query Frame = 1 
Query:   43 MKFIFALSFVLVAAATAFVPTASVGRVGSTASRTRSNVVLLRAKEDGEKHVGTGGMADTRDPEPRDDPDPRKSISAAPSFEEYLKQKQA 309
            MKF+  L+ +L  AATAFVP     R G          + +RA++  EKH G GGMADTRDPEP D  DPRKSIS AP+FEEY+KQKQA
Sbjct:    1 MKFVIVLAAML-GAATAFVPATMPARAG----------MAVRAED--EKHRGVGGMADTRDPEPVDHEDPRKSISKAPTFEEYMKQKQA 76
[Close]
BLAST of mRNA_P-littoralis_Contig178.9.1 vs. uniprot
Match: A0A835YLE0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLE0_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 2.430e-14
Identity = 50/90 (55.56%), Postives = 60/90 (66.67%), Query Frame = 1 
Query:   43 MKFIFALSFVLVAAATAFVPTASVGRVGSTASRTRSNVVLLRAKEDGEKHVGTGGMADTRDPEPRDDPDPRKSISAAPSFEEYLKQKQAE 312
            MKF+ AL+ VL + A+AFVP           + T +  + L A+E   KH G GGMADTRDPEP D  DPRKSIS AP+FEEY+KQKQAE
Sbjct:    1 MKFLLALALVL-SVASAFVP-----------ATTPARSMALSAEE---KHRGVGGMADTRDPEPVDHEDPRKSISKAPTFEEYMKQKQAE 75
[Close]
BLAST of mRNA_P-littoralis_Contig178.9.1 vs. uniprot
Match: K0TRG6_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TRG6_THAOC)

HSP 1 Score: 72.0 bits (175), Expect = 2.230e-11
Identity = 44/83 (53.01%), Postives = 54/83 (65.06%), Query Frame = 1 
Query:   58 ALSFVLVAAATAFVPTASVGRVGSTASRTRSNVVLLRAKEDGEKHVGTGGMADTRDPEPRDDPDPRKSISAAPSFEEYLKQKQ 306
            AL   LVA+A+AF P +   R  +  S             +GEK +G+GGMADTRDPE  +D DPRKSISAAPSFEEYLKQ++
Sbjct:   62 ALLAALVASASAFAPASQFSRTTALNS-------------EGEKKLGSGGMADTRDPEAFEDEDPRKSISAAPSFEEYLKQRE 131
[Close]
BLAST of mRNA_P-littoralis_Contig178.9.1 vs. uniprot
Match: D7G2R1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2R1_ECTSI)

HSP 1 Score: 70.1 bits (170), Expect = 5.150e-10
Identity = 34/42 (80.95%), Postives = 36/42 (85.71%), Query Frame = 1 
Query:  181 GEKHVGTGGMADTRDPEPRDDPDPRKSISAAPSFEEYLKQKQ 306
            GEKH+GTGGMADTRDP+  D  DPRKSISAAPSF EYLK KQ
Sbjct:  167 GEKHIGTGGMADTRDPDALDHEDPRKSISAAPSFAEYLKSKQ 208
[Close]
BLAST of mRNA_P-littoralis_Contig178.9.1 vs. uniprot
Match: B8LEA0_THAPS (Predicted protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8LEA0_THAPS)

HSP 1 Score: 68.9 bits (167), Expect = 2.870e-9
Identity = 45/92 (48.91%), Postives = 59/92 (64.13%), Query Frame = 1 
Query:   43 MKFIFALSFVLVAAATAFVPTASVGRVGSTASRTRSNVVLLRAKEDGEKHVGTGGMADTRDPEPRDDPDPRKSISAAPSFEEYLKQKQAERG 318
            MKF+ ALS  L+A+A+AF P+A + R  +                   +H+G+GGMADTR+PE   + DPRKSISAAPSFEEYLKQ+ A+ G
Sbjct:    1 MKFV-ALS--LIASASAFAPSAQLSRTSAL-----------------NQHIGSGGMADTRNPEASVNEDPRKSISAAPSFEEYLKQRAAQDG 72
[Close]
BLAST of mRNA_P-littoralis_Contig178.9.1 vs. uniprot
Match: A0A1E7F0Y3_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F0Y3_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 3.420e-9
Identity = 43/92 (46.74%), Postives = 52/92 (56.52%), Query Frame = 1 
Query:   43 MKFIFALSFVLVAAATAFVPTASVGRVGSTASRTRSNVVLLRAKEDGEKHVGTGGMADTRDPEPRDDPDPRKSISAAPSFEEYLKQKQAERG 318
            MKF  A+  +  +   AF P A  GR         + VV     E     +G GGMADTR+P+  D+ DPRKSIS APSFEEYLKQ+ AE G
Sbjct:    1 MKFTLAVVALCFSGVAAFAP-APAGRA--------TTVVFNEGPE-----IGAGGMADTRNPDAADNEDPRKSISEAPSFEEYLKQRDAEAG 78
[Close]
BLAST of mRNA_P-littoralis_Contig178.9.1 vs. uniprot
Match: A0A7S2JSU5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JSU5_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 4.520e-9
Identity = 43/90 (47.78%), Postives = 50/90 (55.56%), Query Frame = 1 
Query:   58 ALSFVLVAAATAFVPTASVGRVGSTASRTRSNVVLLRAKEDGEKHVGTGGMADTRDPEPRDDPDPRKSISAAPSFEEYLKQKQAERGETP 327
            A+   LVA+A AF P  S  R          +V++          +G GGMADTRDPE   D DPRKSISAAPSFEEYLKQ+     E P
Sbjct:    2 AIFTALVASAAAFAPQPSFSR---------GSVIVFNG-------LGAGGMADTRDPEEYSDDDPRKSISAAPSFEEYLKQRSGAVAEKP 75
[Close]
BLAST of mRNA_P-littoralis_Contig178.9.1 vs. uniprot
Match: A0A835YPW3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPW3_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 5.250e-9
Identity = 30/40 (75.00%), Postives = 36/40 (90.00%), Query Frame = 1 
Query:  190 HVGTGGMADTRDPEPRDDPDPRKSISAAPSFEEYLKQKQA 309
            H+GTGGMADTR+P+P+D  DPRKSIS AP+FEEYLKQ+ A
Sbjct:  147 HIGTGGMADTRNPDPKDHEDPRKSISRAPTFEEYLKQRAA 186
[Close]
BLAST of mRNA_P-littoralis_Contig178.9.1 vs. uniprot
Match: A0A7S2BTZ6_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BTZ6_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 1.270e-8
Identity = 32/50 (64.00%), Postives = 37/50 (74.00%), Query Frame = 1 
Query:  163 LRAKEDGEKHVGTGGMADTRDPEPRDDPDPRKSISAAPSFEEYLKQKQAE 312
            ++ K    +HVG GGM DTRDPE     DPRKSISAAPSFEEY+KQ+ AE
Sbjct:   67 MKIKPVNTEHVGKGGMVDTRDPEVMTHEDPRKSISAAPSFEEYMKQRAAE 116
[Close]
BLAST of mRNA_P-littoralis_Contig178.9.1 vs. uniprot
Match: D7G2R0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2R0_ECTSI)

HSP 1 Score: 68.2 bits (165), Expect = 1.810e-8
Identity = 33/41 (80.49%), Postives = 35/41 (85.37%), Query Frame = 1 
Query:  184 EKHVGTGGMADTRDPEPRDDPDPRKSISAAPSFEEYLKQKQ 306
            EKH+GTGGMADTRDP+  D  DPRKSISAAPSF EYLK KQ
Sbjct:  373 EKHIGTGGMADTRDPDALDHEDPRKSISAAPSFAEYLKSKQ 413
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig178.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YTB4_9STRA5.110e-1556.18Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YLE0_9STRA2.430e-1455.56Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
K0TRG6_THAOC2.230e-1153.01Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
D7G2R1_ECTSI5.150e-1080.95Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
B8LEA0_THAPS2.870e-948.91Predicted protein n=1 Tax=Thalassiosira pseudonana... [more]
A0A1E7F0Y3_9STRA3.420e-946.74Uncharacterized protein n=1 Tax=Fragilariopsis cyl... [more]
A0A7S2JSU5_9STRA4.520e-947.78Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
A0A835YPW3_9STRA5.250e-975.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2BTZ6_9STRA1.270e-864.00Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
D7G2R0_ECTSI1.810e-880.49Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig178contigP-littoralis_Contig178:52729..62753 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog159749.K0TRG6
Model size1849
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorychloroplast
Exons3
Evalue6.55e-14
EggNOG OGs2D5RA@1|root,2SZDG@2759|Eukaryota
Cds size288
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789853.8412848-UTR-P-littoralis_Contig178:52728..531171680789853.8412848-UTR-P-littoralis_Contig178:52728..53117Pylaiella littoralis U1_48UTRP-littoralis_Contig178 52729..53117 -
1680789853.8532305-UTR-P-littoralis_Contig178:53150..542801680789853.8532305-UTR-P-littoralis_Contig178:53150..54280Pylaiella littoralis U1_48UTRP-littoralis_Contig178 53151..54280 -
1680789853.8804777-UTR-P-littoralis_Contig178:62711..627531680789853.8804777-UTR-P-littoralis_Contig178:62711..62753Pylaiella littoralis U1_48UTRP-littoralis_Contig178 62712..62753 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789853.8625185-CDS-P-littoralis_Contig178:54280..544451680789853.8625185-CDS-P-littoralis_Contig178:54280..54445Pylaiella littoralis U1_48CDSP-littoralis_Contig178 54281..54445 -
1680789853.8715897-CDS-P-littoralis_Contig178:62588..627111680789853.8715897-CDS-P-littoralis_Contig178:62588..62711Pylaiella littoralis U1_48CDSP-littoralis_Contig178 62589..62711 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig178.9.1prot_P-littoralis_Contig178.9.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig178 54281..62711 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig178.9.1

>prot_P-littoralis_Contig178.9.1 ID=prot_P-littoralis_Contig178.9.1|Name=mRNA_P-littoralis_Contig178.9.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=96bp
MKFIFALSFVLVAAATAFVPTASVGRVGSTASRTRSNVVLLRAKEDGEKH
VGTGGMADTRDPEPRDDPDPRKSISAAPSFEEYLKQKQAERGETP*
back to top

mRNA from alignment at P-littoralis_Contig178:52729..62753-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig178.9.1 ID=mRNA_P-littoralis_Contig178.9.1|Name=mRNA_P-littoralis_Contig178.9.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=10025bp|location=Sequence derived from alignment at P-littoralis_Contig178:52729..62753- (Pylaiella littoralis U1_48)
CGACGTACACTCCCGTACACTACCGCAAGGACAAATAGTGAGATGAAGTT
TATCTTTGCCCTCTCCTTTGTCCTAGTGGCTGCGGCCACCGCTTTCGTGC
CCACTGCGTCCGTCGGCCGTGTCGGCAGCACCGCTTCTCGCACGCGCTCA
AACGTCGTCCTGCTGGTGAGAAAGAAAGAGTTGCCTTTGTTTTTGAAATT
TTACTCTAAAAAACTAAAAAACGACATCATGCTATCATACAGCAGTGCTT
CGAGGTACAGCAGTACCTGTTGCGCATTGCACGCCACTGCTGTGCAGCAG
CGTGAGGTGTATCTACTCCACAGCGAGACTAGTTATCAAGTCCTGGTAAT
GATGGCGGTAGAAAGGTCTTGCCCAAGAGCTTTCCGAACACACGTCGTTT
AGCATTGGCACCCTCCTCGTTTTACGGGGTACGGCATACAGCAGTAGTAG
TAATCGACGTGTAAAAGTCGGCCAAGGGGGTGTGGTATCTTGTATCACCC
AGGGTACACTCCTGTACGGCAGCACGGCACAGGCAGCAGTGCATATGAAA
TGATACGAAGTATATCATACGTGTAGGTTGCGCAAGAAAGCATACCCCGG
TGGTGACGTTTTGTTTTTGTTTTACCTTTTTATTGAAAATGCTACACTGC
TGCTGTATGACACCAAGTACCTCGTCAGTAATCGTATTACGGTGAATAAG
GGGGTGTGATGTCGGATCTCACCAGTGTGTTCAAGTGCGCGGTGCACACC
CGCCCAACTAAAGGGAGGAGACAACAAAGAACAACGGTGTCTGCTTTTGA
TATTGTGGTGTGGGGGGGGTGATACCGCAGGTGACATGAGTACCACGCCC
CCTGGGCCAATATTATTATTTACTTCGAAGTACTATTTACAGGGCGATTA
TTCCGTAACGAACAGGATCAGAATACCAAACGATTTGATTTACGTCGAAG
TACTATTTACACGGCGATTATTCCGTAACGAACAGGATCAGAATACCAAA
CGATTTGCAATCGGAGAACTCTCAACGATCCTTTTACGTGTCGCCACCAT
CATCGACACCGAAACTCGCCTTGCTGTGAAGTACCTAACCAAGCTTCCAA
AATCAGTCAACTTCATCTACCGTGTGGCTGACCTGGCTGTCGGACGCCGC
TCCTTCTCCCACAGGCTTGTGTTACAGAGAAGGCGGCTCCGCCAGGGTGT
CAGGACCCTTGATGGAAACCCTGAAAAATCGCCGGGGCGCGCGGGTGTGA
TATATTCCGTCACGTACGGTATCTTGGGAGGAAAAAAATTGCTGCCGCCA
CACTCATTCCGACAGGGTTGCGATAACAAGGGATTGTGCTATCTCTGCTG
GCCAGTATTCTGAGAAAGACAAAAAAGATAAGAAAATCACGACAGGAAAC
AGGGGGGGGCGGTTCATAGCATCGCTTCGTAGGTCAGAGGTCACGATTCT
TCATGCACAAGAAAGAGTTCATACAAACTGTACAGACACCCTGCAAACTT
TTTCGGGCATGCGTTATTTTTGATATCGAAGACCGTATGCAGCAGTATAC
CCCTGCTCCTCCAAGAGGTTATGCTATGTCAGATTGAAGGAGATGCCGGT
CCTCGAAGAAATGGCCGCGGTCAACCACAAAGAAGGGTGCACACCCCGCG
GTATGATAGCGTGCATACCGGTGTACAGCTTTGTATAACACGTAATGCAA
AAAAAAGAACCGCTGCTTCTTGTTGTTTGCAGCAGTAAGAATACGGGAAC
CCCTGTACTAACAGCAGTTGTGCACGGGGCGCCATGTGCAGTTGTTGTTG
TTTGTTGTTGATTCTCACATTAGCTCACTACCGCCGCAGTCTAGCCCGTG
GTCACAAACCAGGCACATATCGTGCTAGGAGGAAAATGAAAAAAAATAAA
AAAAAATGGACTATGATCACCCACAGTCAAATTAGAGGTTGGGGTACCAT
CTGTGGTGGCCAAAGTACCAAACAAAACACAGAAAAAATACAGAAAATAA
CAGGTTCGAAAGGAAGAAAAAAGAATGGAAACAGTACAAAAACCAAGGCA
AACCTTAATCATATGCTTCGAAGCACTTCGTATACCGAACCAGAGCCCAG
GGCCATGAGACACCAAGGCAAAGGCAAACCAGGGCGCATGGACCAGTAAA
TACATGATCGAAAGACGAAAGACAAATAAATAGAAGAAGACACAGGGAGG
GCACAAAGACTGAGGGAGTGTACTCGTACACAAACACATGGTATATTTTA
TTTTTTATTTTTTTCCTCCTAGCACGATATGTGCCTGGTTTGTGACCACG
GGCTAGACTGCGGCGGTAGTGAGCTAATGTGAGAATCAACAAAAACAACA
ACAAACAAACACAAAAAAATAGGCCGCCAAATAAAGAGGAAGCAGGGAAA
CGAAAGGGAAAAGAAAAGAGACAAAACAGGAAAAAATACACTGAGTGCAG
AGGAGAAACCGGAAGTCGGGGGAGGGGGGGGGGGGTGATAAAAAATAAAA
TAAAAAGGGATGCAATCAGTCGCAAACATGTCTCGCCACGAGGTCTGCCT
GTTCACGCTTGCTCTCCTCAGTCGCACTCATGACTCCTGCTACTGGCACC
ACCGTACCCAGTTGTTTCTGCCCCACATCTTTGGCGGCAGCTACACCACC
GCTCCGTGATTTCCGCCCTGCAGGTTTTCCAATCCGGCCACCCCGTAGCT
TGGCTTTGGGCTGCTTCTTCTGCAGCGCAACTTCAACCCTACTACCATGC
TGCCCTTGTCCCCCCCCGTACTCCTCCTCTTGTTTATCCCCGCCATCCGG
TCTCACTCTTTTGGCCAAGGCCTGCCCCTCAGCCGCGTCCCTCTCCCTTT
TCAGTCGACTTGTCTCTGATACGTCTACCTCTTTCTTGAGCCACTTGTGC
GTAAACCGCCGCGCACCCTCGTCGATCCTGTCGTGCCACTCATCAACTCT
CTTGGCACTTGCCTCCCACCCCTCTTTCTTGTCGATAGCGATGTCGAACA
CTTCGAGGTCCTCCTGCATTCGCCTCAGCCAGTCAAACTCTTGTCCCCCC
AAATACCTAGCACCCCCCTGCAATGCTCCCAAAAGAGCAATTTTCGGGAG
TCTCTCGTCTCTCATGCGCGCAACGAATCCTGCGAAGCACAGTCGCCGCT
TGCGCACGGTGGCTTCAATGCTCTCGTCGCCACCCGCGGTGGCCAGGGCT
TTGGCGTGGGAGAGAGGGGTCGGTCTGTTCTCTCCCTCTTTTTCCATCCG
ATGCAGCGAAGGAGGAAGAAGTGGTGGGCTGACCGAAGCTTGCGGTACTC
CGCTGGCTTCAGGTTCCATGTAACACGCCCGTAGAGTAGGGTCTCCACGA
CTTCGGCAGTATGACCCTTTGATAGCCCATTGTGCACGGGGCGCTTGCTG
TTCATAGCAGTAAGACTACGGGAACCCCTGTACCAACAGCAGTTGTGCAC
GGGGCGTCATGTGCAGTATGACCCTATGACAGACCATTGTGCACGGGGCG
CCATGTGCAGTATGACCCTATGACAGCTCATTGTGCAGGGGGCGCCATGT
GCAGTATGACCCTACGATAGCCCATTGTGCACGGGGCGCCCTGTGCAGTA
TGACCCTATGATAGCCCATCGTACACGGGGCGCCATGTGCAGTATGACCC
TATGATAGCCCATCGTACACGGGGCGCCCTGTGCAGTATGACCCTATGAT
AGCCCATCGTGCACGGGGCGCCATGTGCAGTATGACCCTATGATAGCCCA
TCGTACACGGGGCGCCCTGTGCAGTATGACCCTATGATAGCCCATCGTGC
ACGGGGCGCCATGTGCAGTATGACCCTATGACAGCCCGTTGTGCAGGGGG
CGCCATGTGCAGTATGACCCTACGATAGCCCAACCCCCACGCCCCCCTTC
CCGATTTTCAAAGCTCGGCGATGTCGAGGAGTGAGTGTTGGTGCCGAAAC
GGGGGAGGGAAGGACGTCGGAAAGGTCTTGTCGAGAGCAGCCCCCAAAAG
CAATCATGCCGTTCTGATGCTGGTACTCTTTTTTCTCTTCTTCTCTTTCG
GTGGTGGTACAGTAGTCGAGCCGGCTGTGAGAGAAATTTGGTCCAGAAGC
AGAGTTGTTGATTGATTCTCACATTATGTGTGATAGCTAAAACCCGTGGT
GTCACAAGCCAGACACGTATGTATCGTGTGGCGGGGGGGGGGGGCAGTGG
GTCGCATGAGTCAGGCGGTGTGTACGGAGTTCAGCAGTGATGACATAAGA
AAACAATACGTACTGTACAAGTAGAGATGTTAAGAATAATCGAAGTGCGA
AGATAATTCTACAAGAGCACTCGTCGGCTTTTCTCTCTTGTCAAAACCCC
GAACATTGTCGCGAGCTCCCCCTTTTTCATGCGCGTCCAGGATTGTGGCC
GTGAATCATTCTCTGAACTATTTATTCAGGACTTCTTCTTGTCTGTGTGA
CCCCCGCTGATTGATGCACCCACACACAGGCACTCGGAGTTGTAGACCGG
CGTCCAGAATAGATGGTATACAGCACACACGCACACACACGTGCACAGAC
ACTATTTGGGCCGAAAAACGTTGTGATTGTTCTGCAAATGTCTGCCTCCT
TTTCGTTGTATCATATGAACAAGGGATTTTCCTGTGCTTGCGCCTTCTTA
CCCGGAAACCCCAAGGGGGACCGTCCGCCTTTTGTTGCGGTGGCGACGCT
GCCCCGGTACGAACAGCAGCGACGTTGAGAGAGAGAGAGAGAGAGAGAGA
GAGAAGGAAGGCGAGAGAGAGAAAGAAAAGGAGAGGCCGCGACCACCACC
GGCAACTATCTGTATGAGTCTTCTACAGCAGTGTCACGTACGCGATGAGC
GGTGTTTTATCACAGGACCGTCTGAAACTACGAAGGAAACCCCCCTTTTC
ATAGTTACACAATACTCGGAGTACAATACTACAGCAGGCCCCCGCGAGAA
GCCGCTCCCGGAATACATTTTGTTTCTTTTGTATGGCTTAAAAATGTGTG
CGCGTGTGCGCGTGTGCGTGTGTGTGTCTCTCTGTGTGTGTCTCTCTCTA
TGTGTGTATGTGTGTGTATGTGTGTGTTGTGTGTTGTGTTGTCACCCCAT
ATTCTCTGGCACACTAGTCTGCACCCTGCGGTTCAAACTACAGGCTAGGC
CCATCGACGGGGTCACACAGGAGGAAGGTCAACACAGGAGGAGTTACCCC
CACCTTCCTTCTGCGGTACATGCGTGAGATTGTTTCTCGCGAGCAGGGAT
CCGCGGTCCCTACCCTCGTCTGCGAAGCCGAATCTGCTTTTACTAACAGC
ATAGCCGCTTTCAAAAGAGCAAAGGAACACATTCACCGGGAATCGAACCC
CCGTTCCTCTGCATCTAGTGTGTGTATGTGTGTGTATGTGTGTGTGCGTG
CGTGCGTGTTGTCAACCCAGCTATTCTCGACGCCAGCCTTTTTCATCTCT
CCGAACAGGTTGGGCGCATCAAGCAGCCGGGGCCACACGGACAGGAAATT
GAACACAGGACTTCATTTTTTTTTTTTTTTGTCACGCTCGTTTGACACGG
CAAGATGCACGTGCACGTACACATGGAAAGTTAGAAAGAATGGGTGAAAT
ATTATGTTCTGGACATCGTACAGTACCTCGTATGATATGATACTTGTACA
CGGAAGTTATCGCACCCTCCCCCCCCCCGGAGAGAGTGTACACACGTGAT
CACAGGGTCGCAAACGATACCACAGCTCAATTTTTTGCGCCGAGGTTTCC
GAGCCCCATCACATCAATCTACGACCGACGAGGGTGCTACAACCGGTAAC
TCTCAAACGGTGCGTGTTGCGTGTGGGGGGGATTCGGAAATGCTTTCGAC
GAAACAGCAGTTTCAAAGCCAAAGCCTCTTCTCATTTTCGGCACCGACAC
GCCTCTTCTCATTTTCGGCGCCGACACGCCTCTCCTCATTTTCGGCGCCG
ACACGCCTCTTATCATTTTCGGCGCCGACACGCCTCTCCTCATTTTCGGC
ACCGACACGCCTCTTATCATTTTCGGCGCCGACACGCCTCTTATCATTTT
TGGCAACGACGCACCTCTGTTCGTTGTCGGCTCAGGCCTGCTGTTTCTGT
GTGTTGTCTTCACGTCAGCGTGCGTTTGATTAAAAGGGTGAACAGCAGCA
AGCGGTAGTACACTTACTATGGATGACAGTTCCGATCTCTGCATAGTACC
TTCTATTGTCCGTGCTGCTGACTCATCCGATATGGGACGTCTTCCGTGGT
CACAGTCTATAAACCTACCCAAAAAAGGGGTATGCCAGTACGCGAGGAAA
TCCTTGCTATCCCATCAAGGTACACTCGGGAACATCCGACGAAATAAAAC
GGACCCCGAAAGATCACACAACGCTATAAAATTACTAGTGGATCGGGATT
GAGAAGCAGTGTGCGTTGGAGGGCCACTTCTCAAATAGCTGCGTTAAGTC
GTTTGCGTTGCTGTTGGGTGGCGTATGTATACCGTGGCTGCAGCGCTACT
GCTGCGGCAGAACAGCTGTGGTGTTCCGCCAGCACAACGAACGCAAAACG
CCTCTCATCATTTTCACAAGAAAGGGACACCAATAATAACGCGCCTCCGA
CAATATAGCTGTGCGTACAGGACACGGGCTGCGGTGAACCTAGCAGCAAT
GGGTAGGTGCCATCTACCTCATCAGTTAAAGCCGTTGGTCGTAACGATCT
GTGCTGAACTGGTGCCAAAGTGTTGCAAAATGTGCTCATTATCTCGGACG
GACACACAGACACCAAACCTCGAAAATTAAATAAAGGCACCCGTCTCAGT
TTTTTTTTTTCTATTCGCACATGCGCTCACACCTGCACATCACGACCAAG
TCGGTATGAATTCGAAGCAGTTCGACAACGAACTTCCAGTTCGCTACGCT
CGTGGACTGCTTCTCAATATAAGAAGAAGAGCACTTCGGTACATGGTAGC
AAAAGTCCAACGAAAATATCAGTAGAGTAGGCGAGCTCTGACAACATTTC
ATTCAACCCCTTCGTTCGAACGTCCCTTTCTCTCATAGTCATTCATGTGG
CCACGGGAAGCGTCCCCTATCGAATGAGTCATCAGCACGGATATTAAAAA
GGTACCATGTACCTTTTTTTGGGTAGTTATAACCTGTGACCACGGAAAAC
GTCCCCTATCGGATGAGTCTGCAGCACGGACATTAAAAGAGTACCACGTA
CCTGGGTATTTATAGCCTGTGCCCACGGGAAACGTCCCCTATTGGATGAG
CCAGCAGCGCAGTCATTTGAAGGTACTGAGCAGAGATCGGCATGGTTTTT
TAATGTGGAGACAACACACACAGAGATCGATCGCCCTCTTATTTTCGCTG
TCGACTGAGTCAGCAGGGGGGACATAATAAAGTACTGAGCAGAGATCGGG
ATGTTTTTTTTATGTGAAGACAACACACACATAGATCGATCGCCCTCCTA
TTTTCGCTGTCGGATGAGTCAGCAGGGGGACATAATAAGGTACAGAGCAG
AGATCGGGATGTTTTTTTTTATTTTAAGTGAACACACGCATACTCTCACG
AACCGATCTCCTTTTTCTCCTCGCCGAAGGGTGCGGCACAAGGCTCACGG
AATTGCATTTATAGACCAAAGCCTCTAAAAATGTCGCAACAAGCTTTCCG
AGAAAAAGCTTTCCGAGAAAACATGTTGGCGGCCGGGGATCCCGGGGGAT
GGCATGATTTCAGCCACGGGTTGGCACGACGTCGTGGCGAAGAGCGCCGT
TAAAGCGAAGCACATTTTTAGCAGCGACGAGAACATCGGAGACACTGGTG
CTTCGTCCAACTGGCTCATTTTTGTGGGAAAAGAAAGTCCAGAACGAGAC
AGAGCCTCTCTCTTGTCCATGGGCCGCAACTTCTGGCTGCCTGGCTGCCT
GTCTATGTGTATGTATGTACGTACGTGTGTCGTTACGCTTGTTCGCGTGT
GTCTAGAAAACCAAGGAAGCTGGTGAGAAACACATCGGCCGCAACTCCTG
GCGGCCTGTCTTCGTGTATGATATACAGCAGACGTATGATGTGTCGTTGC
TCTCCTCTTCGCGTGCGTCCCTAGAAGAGCCGAGGAGGATGGCGAGAAAC
ACGCTGGCCGCAACTACTGGCGGCCTGTCTGTGTGTACGTTTCATACATA
TGAGACGTACCTGGTATGTCATTGCTCTCGTGCTCGCGTGCGTGTCTAGA
GAGCCGAGGAGGATGGCATGAGAAACAAGCCGGCCGCAACTACTGACGGC
CTGTCTGTGCGTGCGTACGTATGTCATTGCGATTGTTCTTACTCGCGTGC
GTTTCTAGAGAGCCAAGGAGGACGGCGAGAAACACGTCGGGACCGGCGGC
ATGGCGGACACGCGCGACCCGGAGCCCAGGGACGACCCCGACCCCCGCAA
GTCCATCTCCGCCGCCCCTTCCTTCGAGGAGTACCTCAAGCAGAAGCAGG
CCGAGCGGGGGGAGACCCCCTGACCGAGCATCGATCCGTCAGTCAATCGA
TCGGTCAATCGAGAGCGTACAGTACGCGACACATGTTGAAAAAACCCTCA
TCATACTTCGAAGTATTTCGGCTAAGGCTCGCGGCTTATTTCTTCCGTGA
GCGAGCGTAACCGAATAGCCACTAGGTAGATTTTAGGGTAGGATACTAGA
ATAGACTGCGCACACAAATGCTCACCTGTGGGTGCTTAAATTTCCAAAAA
CCTCAGGCTGGATTTCTTGTCTGTGAGTTCCTCAACATGTGTCGCGTACT
GCACGCACGTGCGACGCAGAAGGGGGGGGGAGACCCCCTGGGCGTTCTTC
AATCATCAAATCAATCGGTGTAAATCGAGAGCAAACACGCACGTGCGACA
CAGCCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAACGCGGGGAAAAACAC
ACGTTCGGCCCAGTGCGCTGCTGCTGTTGTTGCAGGCGTTTGATACCAGA
AAAAAAAACAGGAGAAAGAGAAGCAGGCAGAGAGGACTAGAGTGGAGAGG
GCTGTTGTAAGCACCCCAAGAAGCTCGCGTTATGCAGTAGTAATCGGGAA
TAACTGAATTGAAGGAATGTACTTGTAGCTCACAAGAGTGTAATCCTTCG
GTCTTGTGTAGTGATTTTTGCGTGCTGTCGGTTTCGGTGTGATGTTTGAT
AGATAGAGGGAGGCACACGTGCGTACTACTACTGTACAGTAGTATTGTCT
ACGGTATATATGTCACACACACCCTGTTGGCCGGTTGGGAAGAAGCTCGC
ATCTGTGTCTGTGGTGCAGGCAATATCCGTGCGTCCGACCTCGCGCCACA
CGTAGCACCATAATTATCATCAGGATTATTATCATTGCTGCTTTGCTTTT
TTTTTTGTGTAAAGCGATATTCTTGTTTGTTCCTTGAAACTGAATACGCC
AGTCATGATAGAGACCCCGTTGTTGGCACTCGACATACAGCATGATACTT
GTAGATGTGTGGTGACCTGGTTCGTGAGGGCTCAGATCCAGGAGGTAAAA
CCCAGCTGGTAAAACCTAAATGACTGCACACATGACATGTCTGTCTCTGG
CTTTTTCTTTTCTGGGGATCTGAGGTGTGCTACTGCGACTGTTGTTGTTG
TTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGGTATTGGTGTTGGT
GTTGGTGTTATTGTTGATGTTGTTATTGTATTTCACGTTGTCAGTGGTAA
CGTGTTGCACTTTTACTCATGCTCCGAACGAACAAACAGCCTTCCTTGAG
TCTCGCCCCCATCTGGTTTCCTCTGTGGGCCGGTGTGTCAAGTCTCTCAC
CTTCACCCCTCTCTGTGGCGATTTTACGGGGCGCACAGAGAGAGGGCCAC
AAGAAACAAGGAGCTTTTGACCTGCATGGGGCGAACGAGTATGGCATCAG
GTCAAGAGTCATTGTGGGTTTATTTTTGCGTAGCCTCTGTTGGTGCAAAC
ATGCAAGCGAGATGTCTCTCTGGCGAAACATGAAATATGATAACATCTGT
TACTTGGTTAACAAGTACGACTTGG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig178:52729..62753-

>mRNA_P-littoralis_Contig178.9.1 ID=mRNA_P-littoralis_Contig178.9.1|Name=mRNA_P-littoralis_Contig178.9.1|organism=Pylaiella littoralis U1_48|type=CDS|length=288bp|location=Sequence derived from alignment at P-littoralis_Contig178:52729..62753- (Pylaiella littoralis U1_48)
ATGAAGTTTATCTTTGCCCTCTCCTTTGTCCTAGTGGCTGCGGCCACCGC
TTTCGTGCCCACTGCGTCCGTCGGCCGTGTCGGCAGCACCGCTTCTCGCA
CGCGCTCAAACGTCGTCCTGCTGAGAGCCAAGGAGGACGGCGAGAAACAC
GTCGGGACCGGCGGCATGGCGGACACGCGCGACCCGGAGCCCAGGGACGA
CCCCGACCCCCGCAAGTCCATCTCCGCCGCCCCTTCCTTCGAGGAGTACC
TCAAGCAGAAGCAGGCCGAGCGGGGGGAGACCCCCTGA
back to top