mRNA_P-littoralis_Contig178.2.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig178.2.1
Unique NamemRNA_P-littoralis_Contig178.2.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig178.2.1 vs. uniprot
Match: D7G4F1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4F1_ECTSI)

HSP 1 Score: 249 bits (636), Expect = 2.950e-73
Identity = 168/389 (43.19%), Postives = 221/389 (56.81%), Query Frame = 2 
Query:    5 ERGEGGGTSPVSRAEACAAWVVLTTQALCYVELIVVSNNKALRESKLSSGSQEFSLQTTPDYSILAIAVAMYLLLSIAAADLWSGIALVLEGRGSGN-FVWFQPRRIFGVCLLITFGALLVASMRVLFSSSFENADLVLGAAAVLFIADIDEKGMVPLSNVGGEWRLFWVLELVGLSLGLAVLVAKLTGSDEAI--REGHRCEWVWETAG--CGIYSWWFILYAYPVTATAFALLATRAISRPASSAVVRVFCPPSPSWVLFSVILSCLVSYTALIYSLGGFRLWEYVSPSMVGITVCGGFAFTVAGSEYFRKLKTAYTTGALRWRSVDRRRRRWLFLSGVVISLAIFVLNLALLVIRERENISDEFEEVFYYSVYEPCLEVLDALQSL 1156
            ER +  G +PV+  EA AAWV+L TQA+CY  L  V  N+   +S  SS         T DYS+LAIAV+MYLLLSIA ADL  G ALV+EGRGSG+ FVWF  RR+FGV L+ T   L+ AS+RVLF SS +N +LV+GAAAVLFIAD+DEK    L NV G+WRLFWVLE++G+S  LA    K TG+D  +  RE  R      T G  C I++W +I    P+T T  ALL T  +S P S   VR F      W +FS++  C VS          F  W  V   ++ + V       V     FR+L  A+T GA R+ + D+RRR +LF +G+V+ L    L+     + + +   D+    F  SVY P +  +  L +L
Sbjct:   60 ERDQDDGEAPVTVPEAVAAWVILLTQAICYARLWYVGGNE-FTDSDTSS--------ETIDYSMLAIAVSMYLLLSIAVADLCGGCALVVEGRGSGDEFVWFTGRRLFGVFLVATLLTLIGASVRVLFFSSEDNVNLVIGAAAVLFIADVDEKAHTVLKNVSGKWRLFWVLEVIGMSFVLATFSVKATGNDGRVAGREPDRAACAAWTDGDDCDIFTWPYIFLELPLTVTVCALLITSEVSEPISPIHVRRFHDRPCQWSMFSLLALCWVSMPY-------FWRWTIVYALVIVLFVV--VVALVIACRSFRELYRAFTRGAERFSATDKRRRFYLFWAGMVVQLLWVTLDAISFSLSDDDE--DDDSHFFPDSVYSPAVNAIITLDTL 428
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BLAST of mRNA_P-littoralis_Contig178.2.1 vs. uniprot
Match: A0A6H5JP75_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP75_9PHAE)

HSP 1 Score: 196 bits (497), Expect = 2.290e-52
Identity = 155/422 (36.73%), Postives = 226/422 (53.55%), Query Frame = 2 
Query:   83 ALCYVELIVVSNNKALRESKLSSGSQEFSLQTTPDYSILAIAVAMYLLLSIAAADLWSGIALVLEGRGSGN-FVWFQPRRIFGVCLLITFGALLVASMRVLFSSSFENADLVLGAAAVLFIADIDEKGMVPLSNVGGEWRLFWVLELVGLSLGLAVLVAKLTGSDEAI--REGHRCEWVWETAGCGIYSWWFILYAYPVTATAFALLATRAISRPASSAVVRVFCPPSPSWVLFSVILSCLVSYTALIYSLGGFRLWEYVSPSMVGITVCGGFAFTVAGSEYFRKLKTAYTTGALRWRSVDRRRRRWLFLSGVVISLAIFVLNLALLVIRERENISDEFEEVFYYSVY--EPCLEVLDALQSLHFLALDAWLMFGMESTKLFSPGFLVVDPSWALPSLLRSLLIGF**FVPVHASLTSVCKW 1333
            A+CY  L  V  N+   E   SS         T DYSILAIAV+MYLLLSIA ADL  G ALV+EGRGSG+ FVWF  RR+FGV L++TF  L+ AS+RVLF SS +N  LV+GAAAVLFIAD+DEK    L N  G+ RL WVLE++G+S  LA    K T +   +  ++ ++ +       CGI++W +I +  P+T T         +SRP  +                  +L   + + ++ Y       + ++    V I +       V     FR+L  A+T GA R+ + D+RRR +LF +G+V+ L    L +AL  +    ++SD  + VF  S++  E  +  LDAL  +H LA+ +W + GM  ++  S   + +DP       L+ +L+G+  +  V   LT V +W
Sbjct:   72 AICYAGLWYVGGNQ-FTEGDTSS--------ETVDYSILAIAVSMYLLLSIAVADLCGGSALVVEGRGSGDDFVWFTGRRLFGVFLVVTFLTLIGASVRVLFFSSQDNVTLVIGAAAVLFIADVDEKAHTVLKNFSGKSRLCWVLEIIGMSFVLATFSLKATDNYGRVAGKDAYKSDCAGWGNDCGIFTWQYIFFELPLTVT---------VSRPTLA---------------MEHVLLLALCWVSMPY------FFRWIILLAVAIVLFVVVVAVVIARRSFRELYRAFTQGAERFTATDKRRRFYLFWAGIVVQL----LRVALTAMYF--SLSDNDQLVFSESIFSAEDAISFLDAL--VH-LAIFSWWICGMGISEGPSRD-IAIDPP------LQPMLLGWGLYYGVLIVLTLVFEW 438
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BLAST of mRNA_P-littoralis_Contig178.2.1 vs. uniprot
Match: A0A6H5KBY2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBY2_9PHAE)

HSP 1 Score: 170 bits (430), Expect = 5.680e-45
Identity = 92/149 (61.74%), Postives = 111/149 (74.50%), Query Frame = 2 
Query:    5 ERGEGGGTSPVSRAEACAAWVVLTTQALCYVELIVVSNNKALRESKLSSGSQEFSLQTTPDYSILAIAVAMYLLLSIAAADLWSGIALVLEGRGSGNFVWFQPRRIFGVCLLITFGALLVASMRVLFSSSFENADLVLGAAAVLFIADI 451
            ERGEG    PVSR+EA AAWVVL +QA+CY  L V++ N+   +S+ S+   +F    +PDYSILAIA AMYLLL+I AADLW G AL LEG GS +F W   RR FGVC+L TF AL+ AS+RVLF SSFEN +LV+GAAAVLFIAD+
Sbjct:  138 ERGEGDAPYPVSRSEAVAAWVVLISQAVCYAGLWVITGNQPPTQSQTSAIDDDFYADRSPDYSILAIAGAMYLLLTIVAADLWGGCALCLEGLGSADFAWCTRRRAFGVCMLGTFVALIGASIRVLFYSSFENMELVIGAAAVLFIADV 286
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig178.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G4F1_ECTSI2.950e-7343.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JP75_9PHAE2.290e-5236.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KBY2_9PHAE5.680e-4561.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig178contigP-littoralis_Contig178:16483..18836 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1660
Hectar predicted targeting categorysignal anchor
Exons4
Cds size1074
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig178.2.1prot_P-littoralis_Contig178.2.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig178 17095..18464 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789853.5131946-UTR-P-littoralis_Contig178:16482..165581680789853.5131946-UTR-P-littoralis_Contig178:16482..16558Pylaiella littoralis U1_48UTRP-littoralis_Contig178 16483..16558 +
1680789853.5246553-UTR-P-littoralis_Contig178:16956..170941680789853.5246553-UTR-P-littoralis_Contig178:16956..17094Pylaiella littoralis U1_48UTRP-littoralis_Contig178 16957..17094 +
1680789853.5657008-UTR-P-littoralis_Contig178:18464..188361680789853.5657008-UTR-P-littoralis_Contig178:18464..18836Pylaiella littoralis U1_48UTRP-littoralis_Contig178 18465..18836 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789853.538141-CDS-P-littoralis_Contig178:17094..173311680789853.538141-CDS-P-littoralis_Contig178:17094..17331Pylaiella littoralis U1_48CDSP-littoralis_Contig178 17095..17331 +
1680789853.5491257-CDS-P-littoralis_Contig178:17568..183991680789853.5491257-CDS-P-littoralis_Contig178:17568..18399Pylaiella littoralis U1_48CDSP-littoralis_Contig178 17569..18399 +
1680789853.557423-CDS-P-littoralis_Contig178:18458..184641680789853.557423-CDS-P-littoralis_Contig178:18458..18464Pylaiella littoralis U1_48CDSP-littoralis_Contig178 18459..18464 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig178.2.1

>prot_P-littoralis_Contig178.2.1 ID=prot_P-littoralis_Contig178.2.1|Name=mRNA_P-littoralis_Contig178.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=358bp
MYLLLSIAAADLWSGIALVLEGRGSGNFVWFQPRRIFGVCLLITFGALLV
ASMRVLFSSSFENADLVLGAAAVLFIADIDEKGMVPLSNVGGEWRLFWVL
ELVGLSLGLAVLVAKLTGSDEAIREGHRCEWVWETAGCGIYSWWFILYAY
PVTATAFALLATRAISRPASSAVVRVFCPPSPSWVLFSVILSCLVSYTAL
IYSLGGFRLWEYVSPSMVGITVCGGFAFTVAGSEYFRKLKTAYTTGALRW
RSVDRRRRRWLFLSGVVISLAIFVLNLALLVIRERENISDEFEEVFYYSV
YEPCLEVLDALQSLHFLALDAWLMFGMESTKLFSPGFLVVDPSWALPSLL
RSLLIGF*
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mRNA from alignment at P-littoralis_Contig178:16483..18836+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig178.2.1 ID=mRNA_P-littoralis_Contig178.2.1|Name=mRNA_P-littoralis_Contig178.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2354bp|location=Sequence derived from alignment at P-littoralis_Contig178:16483..18836+ (Pylaiella littoralis U1_48)
CAACGAGCGTGGCGAGGGAGGCGGCACGTCTCCCGTCTCGCGCGCTGAGG
CTTGCGCAGCGTGGGTCGTCCTCACTGTGAGCGCCGAGTTTCTCCACCTT
TGAGCCGCTTGATCTGTGCTATACCTCCATCTGTGGGGAAAAAATGGATG
GGTTTTGCGTTTGCATTATTACTTGAATGGAACCTACTCCGTATGTGTGT
GAAATGGAACATCTCACCACCCTTTTGAATTATTTTGGCTGTGGGCGAGT
TGGGCTCGAGCCTTCTATAAGTTTGTTCTGCTGTCGTGTATTTCAAATAA
CACATAGATGTGGCCGCTGCCCTCTCTGCCTACAGTTTGGGCAGGAACGG
GCAGTGTCTTCCACTGATCACAATAGCGAGATTGGGGCACCCGGGAGGGC
GTTCGAATTTCCTCACAGGCCCTTTGACCACCTACTACGCGCTCTCTGCA
TACCCTATTTGAACCTTCCGGCAGACTCAGGCGCTGTGCTACGTTGAGCT
AATAGTGGTCTCCAATAATAAAGCTCTTCGGGAAAGTAAGCTCTCTTCCG
GCAGTCAAGAATTTTCCCTGCAGACCACTCCCGACTATTCGATCTTAGCC
ATCGCCGTGGCCATGTACCTGCTGCTGTCAATAGCTGCGGCAGATCTATG
GAGCGGAATAGCTCTCGTCTTGGAAGGGCGCGGCTCGGGGAACTTCGTGT
GGTTCCAGCCTCGAAGAATTTTCGGCGTGTGTCTCTTGATAACGTTTGGC
GCACTGCTCGTGGCTTCCATGCGGGTGCTGTTCTCCTCCTCTTTTGAAAA
CGCGGATCTGGTTCTAGGCGCTGCCGCGGTCCTATTCATCGCCGACATCG
TGAGAGGTTTTCCGATGTTTTCTCCGTGTTTGTTGCTTCAGAATTTATTA
TGTATCTCACGGCTTGCTCAAACTGAGCAAGAAACCTCATGTACCGTACT
TGCATCGGCTGGATCCACCACTTTATCTAGCTGGCTATAAAATCGTCTCC
TCGATGAGAACGTGCAGCAGTAAAAAACGTTTAACTACTGCTAAAAATGG
AACTCAGTTCGCACGGTGTAATTGACTCTGGCACAGGACGAAAAGGGCAT
GGTGCCACTCAGCAATGTCGGCGGGGAATGGCGCTTGTTCTGGGTCCTCG
AACTCGTCGGCTTAAGCTTGGGGCTCGCGGTGTTGGTTGCGAAACTGACG
GGTAGCGATGAAGCAATCCGAGAGGGCCACCGCTGCGAGTGGGTTTGGGA
AACAGCGGGTTGCGGCATCTACAGCTGGTGGTTTATCTTGTACGCCTACC
CAGTCACTGCGACAGCGTTCGCCTTGTTGGCGACAAGAGCAATTTCCAGG
CCGGCCTCTTCCGCCGTTGTTCGAGTGTTTTGCCCCCCTTCCCCTAGCTG
GGTGTTGTTCTCGGTTATCCTGTCATGCTTGGTCTCTTACACTGCTTTGA
TTTACTCGCTAGGTGGATTCCGGCTGTGGGAATATGTAAGCCCGTCGATG
GTTGGAATAACTGTTTGTGGAGGATTCGCATTCACTGTTGCTGGCTCTGA
GTACTTTCGTAAGCTGAAAACGGCGTACACTACGGGAGCGCTCAGATGGC
GCTCGGTAGACCGCCGACGGCGACGTTGGCTGTTTTTGTCGGGGGTTGTT
ATTAGCCTGGCAATATTTGTCCTCAACCTTGCTTTACTTGTAATACGCGA
ACGTGAAAATATTTCGGACGAGTTCGAAGAGGTATTCTACTATAGCGTGT
ATGAACCGTGCTTAGAAGTGTTGGATGCGCTCCAGTCACTACATTTCTTG
GCTCTGGATGCATGGTTAATGTTCGGGATGGAGTCGACGAAATTATTCTC
ACCTGGCTTCCTAGTCGTTGATCCAAGCTGGGCTCTACCGTCTCTATTGA
GGTCCCTGCTCATCGGCTGGGGCATACGTGACGGTTCCGTCGTCGTACAC
CACTGGTTGTCTGATGGAGCCTGGGATTTTGATGATTTGTCCCCGTACAT
GCATCTCTTACTTCCGTATGCAAGTGGTATGGTATGGTTAGTGTGGCCGT
TCACGGCGGGGACACTGTTGTGGGGTTGGACGCTCGAAGTCCGGGCCATA
GCGTATTGGTACGCGGCCAGCAACCTTATCGAAACAAGCGTGGCTGCCGC
GGCAATCTGGATTCACGCCGCGAATGAAGGGGTCATTACATGACAGGCCT
ATCTGTTCGTATGTAGCCATCGATGGCGGGCAGATATAATTTATAGCAAA
ATCGCTTGATGAGCGGCAGTCAGTATGTCTGTACTGTACTATCATACAGC
AGCAGGGTTCTGCTGTTGGTTGTTACAGTGTAGGGCGACAATGGAAAAAA
CAGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig178:16483..18836+

>mRNA_P-littoralis_Contig178.2.1 ID=mRNA_P-littoralis_Contig178.2.1|Name=mRNA_P-littoralis_Contig178.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1074bp|location=Sequence derived from alignment at P-littoralis_Contig178:16483..18836+ (Pylaiella littoralis U1_48)
ATGTACCTGCTGCTGTCAATAGCTGCGGCAGATCTATGGAGCGGAATAGC
TCTCGTCTTGGAAGGGCGCGGCTCGGGGAACTTCGTGTGGTTCCAGCCTC
GAAGAATTTTCGGCGTGTGTCTCTTGATAACGTTTGGCGCACTGCTCGTG
GCTTCCATGCGGGTGCTGTTCTCCTCCTCTTTTGAAAACGCGGATCTGGT
TCTAGGCGCTGCCGCGGTCCTATTCATCGCCGACATCGACGAAAAGGGCA
TGGTGCCACTCAGCAATGTCGGCGGGGAATGGCGCTTGTTCTGGGTCCTC
GAACTCGTCGGCTTAAGCTTGGGGCTCGCGGTGTTGGTTGCGAAACTGAC
GGGTAGCGATGAAGCAATCCGAGAGGGCCACCGCTGCGAGTGGGTTTGGG
AAACAGCGGGTTGCGGCATCTACAGCTGGTGGTTTATCTTGTACGCCTAC
CCAGTCACTGCGACAGCGTTCGCCTTGTTGGCGACAAGAGCAATTTCCAG
GCCGGCCTCTTCCGCCGTTGTTCGAGTGTTTTGCCCCCCTTCCCCTAGCT
GGGTGTTGTTCTCGGTTATCCTGTCATGCTTGGTCTCTTACACTGCTTTG
ATTTACTCGCTAGGTGGATTCCGGCTGTGGGAATATGTAAGCCCGTCGAT
GGTTGGAATAACTGTTTGTGGAGGATTCGCATTCACTGTTGCTGGCTCTG
AGTACTTTCGTAAGCTGAAAACGGCGTACACTACGGGAGCGCTCAGATGG
CGCTCGGTAGACCGCCGACGGCGACGTTGGCTGTTTTTGTCGGGGGTTGT
TATTAGCCTGGCAATATTTGTCCTCAACCTTGCTTTACTTGTAATACGCG
AACGTGAAAATATTTCGGACGAGTTCGAAGAGGTATTCTACTATAGCGTG
TATGAACCGTGCTTAGAAGTGTTGGATGCGCTCCAGTCACTACATTTCTT
GGCTCTGGATGCATGGTTAATGTTCGGGATGGAGTCGACGAAATTATTCT
CACCTGGCTTCCTAGTCGTTGATCCAAGCTGGGCTCTACCGTCTCTATTG
AGGTCCCTGCTCATCGGCTTTTGA
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