mRNA_P-littoralis_Contig178.52.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig178.52.1
Unique NamemRNA_P-littoralis_Contig178.52.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig178.52.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig178contigP-littoralis_Contig178:289127..289516 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size390
Hectar predicted targeting categoryother localisation
Exons1
Cds size306
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789853.435473-UTR-P-littoralis_Contig178:289126..2891491680789853.435473-UTR-P-littoralis_Contig178:289126..289149Pylaiella littoralis U1_48UTRP-littoralis_Contig178 289127..289149 +
1680789853.4535728-UTR-P-littoralis_Contig178:289455..2895161680789853.4535728-UTR-P-littoralis_Contig178:289455..289516Pylaiella littoralis U1_48UTRP-littoralis_Contig178 289456..289516 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789853.4452152-CDS-P-littoralis_Contig178:289149..2894551680789853.4452152-CDS-P-littoralis_Contig178:289149..289455Pylaiella littoralis U1_48CDSP-littoralis_Contig178 289150..289455 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig178.52.1prot_P-littoralis_Contig178.52.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig178 289150..289455 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig178.52.1

>prot_P-littoralis_Contig178.52.1 ID=prot_P-littoralis_Contig178.52.1|Name=mRNA_P-littoralis_Contig178.52.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=102bp
MHTQIVAKRAPLSSGVDQHGRAREIRVVSTSTTKTSDGDTGEPYGQDSTL
NALPHWEHSPSCYGGVRACLIIADFCPETENRSWKPKISDNMQAFFSVSL
K*
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mRNA from alignment at P-littoralis_Contig178:289127..289516+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig178.52.1 ID=mRNA_P-littoralis_Contig178.52.1|Name=mRNA_P-littoralis_Contig178.52.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=390bp|location=Sequence derived from alignment at P-littoralis_Contig178:289127..289516+ (Pylaiella littoralis U1_48)
GATATCGTCAACGATATCGCCCCATGCACACACAGATTGTTGCCAAGCGG
GCCCCCCTGAGCAGCGGGGTCGATCAGCATGGACGAGCACGAGAAATACG
GGTTGTATCAACCTCGACCACGAAAACGTCGGATGGGGATACTGGGGAAC
CTTACGGGCAAGACTCAACACTCAACGCGCTGCCTCACTGGGAACATAGC
CCGTCATGCTACGGCGGTGTTAGGGCCTGTCTAATCATTGCGGATTTTTG
CCCGGAAACAGAGAACCGTTCCTGGAAACCTAAAATCTCCGACAATATGC
AGGCGTTCTTCTCGGTTTCCCTGAAATGAGCACTGCCCAAAAAATCCCGA
AATACTCATTTCAGGGTTCCAGGAAATTTGAACCCGCATT
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Coding sequence (CDS) from alignment at P-littoralis_Contig178:289127..289516+

>mRNA_P-littoralis_Contig178.52.1 ID=mRNA_P-littoralis_Contig178.52.1|Name=mRNA_P-littoralis_Contig178.52.1|organism=Pylaiella littoralis U1_48|type=CDS|length=306bp|location=Sequence derived from alignment at P-littoralis_Contig178:289127..289516+ (Pylaiella littoralis U1_48)
ATGCACACACAGATTGTTGCCAAGCGGGCCCCCCTGAGCAGCGGGGTCGA
TCAGCATGGACGAGCACGAGAAATACGGGTTGTATCAACCTCGACCACGA
AAACGTCGGATGGGGATACTGGGGAACCTTACGGGCAAGACTCAACACTC
AACGCGCTGCCTCACTGGGAACATAGCCCGTCATGCTACGGCGGTGTTAG
GGCCTGTCTAATCATTGCGGATTTTTGCCCGGAAACAGAGAACCGTTCCT
GGAAACCTAAAATCTCCGACAATATGCAGGCGTTCTTCTCGGTTTCCCTG
AAATGA
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