mRNA_P-littoralis_Contig178.42.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig178.42.1
Unique NamemRNA_P-littoralis_Contig178.42.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig178.42.1 vs. uniprot
Match: A0A6H5K1G2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1G2_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 7.280e-13
Identity = 28/48 (58.33%), Postives = 40/48 (83.33%), Query Frame = 2 
Query:    2 QAAFDASISLGAKGGGVQLTRKDCFTQACRAVWPGEDSISAAIAEVLL 145
            +A+FD SI + A+G G+Q+TR DCFTQACRAVWPG++ + AAI++ +L
Sbjct:   29 KASFDTSIQMNARGRGMQITRSDCFTQACRAVWPGDEPVPAAISDAVL 76
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BLAST of mRNA_P-littoralis_Contig178.42.1 vs. uniprot
Match: A0A6H5JN25_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN25_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 7.620e-13
Identity = 29/47 (61.70%), Postives = 38/47 (80.85%), Query Frame = 2 
Query:    5 AAFDASISLGAKGGGVQLTRKDCFTQACRAVWPGEDSISAAIAEVLL 145
            A+FD SI + A+G GVQ+TR DCFTQACRAVW G++S+ AAI++  L
Sbjct:    4 ASFDTSIQMNARGRGVQITRNDCFTQACRAVWAGDESVPAAISDAFL 50
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BLAST of mRNA_P-littoralis_Contig178.42.1 vs. uniprot
Match: A0A6H5JPZ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPZ3_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 4.170e-10
Identity = 28/47 (59.57%), Postives = 37/47 (78.72%), Query Frame = 2 
Query:    5 AAFDASISLGAKGGGVQLTRKDCFTQACRAVWPGEDSISAAIAEVLL 145
            A+FD SI + A+G GVQ+TR DCFT+AC AVW G++ + AAIA+ LL
Sbjct:  149 ASFDTSIQMNARGRGVQITRSDCFTEACPAVWVGDEPVPAAIADALL 195
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BLAST of mRNA_P-littoralis_Contig178.42.1 vs. uniprot
Match: A0A6H5K8I9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8I9_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 4.700e-10
Identity = 27/47 (57.45%), Postives = 35/47 (74.47%), Query Frame = 2 
Query:    5 AAFDASISLGAKGGGVQLTRKDCFTQACRAVWPGEDSISAAIAEVLL 145
            A+FD SI + A+G  VQ+TR D FTQACRAVWPG++ + AAI +  L
Sbjct:   28 ASFDTSIQMNARGRDVQITRSDFFTQACRAVWPGDEPVPAAIPDAFL 74
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BLAST of mRNA_P-littoralis_Contig178.42.1 vs. uniprot
Match: A0A6H5JP65_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP65_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 1.840e-9
Identity = 26/47 (55.32%), Postives = 36/47 (76.60%), Query Frame = 2 
Query:    5 AAFDASISLGAKGGGVQLTRKDCFTQACRAVWPGEDSISAAIAEVLL 145
            A+FD SI + A+G GVQ+T+ D FTQACRAVW G++ + AAI++  L
Sbjct:   28 ASFDTSIQMNARGRGVQITKSDYFTQACRAVWLGDEPVPAAISDAFL 74
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BLAST of mRNA_P-littoralis_Contig178.42.1 vs. uniprot
Match: A0A6H5JXX9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXX9_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 6.920e-8
Identity = 23/44 (52.27%), Postives = 32/44 (72.73%), Query Frame = 2 
Query:    2 QAAFDASISLGAKGGGVQLTRKDCFTQACRAVWPGEDSISAAIA 133
            QA +D  +++  +G GVQL R DCFT ACRAVWPG + + A++A
Sbjct:  116 QACYDGGMAMNTRGKGVQLKRADCFTHACRAVWPGNEEMEASVA 159
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BLAST of mRNA_P-littoralis_Contig178.42.1 vs. uniprot
Match: A0A6H5KJS7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJS7_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 8.460e-8
Identity = 25/47 (53.19%), Postives = 33/47 (70.21%), Query Frame = 2 
Query:    2 QAAFDASISLGAKGGGVQLTRKDCFTQACRAVWPGEDSISAAIAEVL 142
            QA +DA  +L A+G GVQL R++CFTQACRAVWP +  +  A+   L
Sbjct:  150 QACYDAGTALNARGRGVQLRRQECFTQACRAVWPDDQPLPVAVLAAL 196
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BLAST of mRNA_P-littoralis_Contig178.42.1 vs. uniprot
Match: A0A6H5JI26_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI26_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 9.070e-8
Identity = 24/47 (51.06%), Postives = 33/47 (70.21%), Query Frame = 2 
Query:    2 QAAFDASISLGAKGGGVQLTRKDCFTQACRAVWPGEDSISAAIAEVL 142
            QA +DA ++L A+G GVQL  ++C TQACRAVWP +  + AA+   L
Sbjct:   19 QACYDAGMALNARGRGVQLRSQECSTQACRAVWPDDQPLPAAVLAAL 65
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BLAST of mRNA_P-littoralis_Contig178.42.1 vs. uniprot
Match: A0A6H5JXC7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXC7_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 3.340e-7
Identity = 24/47 (51.06%), Postives = 33/47 (70.21%), Query Frame = 2 
Query:    2 QAAFDASISLGAKGGGVQLTRKDCFTQACRAVWPGEDSISAAIAEVL 142
            +A +DA  +L A+G GVQL R+ CFT ACRAVWP +  + AA+ + L
Sbjct:  131 KACYDAGTALNARGRGVQLRRQKCFTHACRAVWPDDQPLPAAVLDAL 177
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BLAST of mRNA_P-littoralis_Contig178.42.1 vs. uniprot
Match: A0A6H5K3W2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3W2_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 4.370e-6
Identity = 23/36 (63.89%), Postives = 29/36 (80.56%), Query Frame = 2 
Query:    2 QAAFDASISLGAKGGGVQLTRKDCFTQACRAVWPGE 109
            QA +DA  +L A+G GVQL R++CFTQACRAVWP +
Sbjct:  254 QACYDAGTALNARGRGVQLRRQECFTQACRAVWPDD 289
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig178.42.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A6H5K1G2_9PHAE7.280e-1358.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN25_9PHAE7.620e-1361.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JPZ3_9PHAE4.170e-1059.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K8I9_9PHAE4.700e-1057.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JP65_9PHAE1.840e-955.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXX9_9PHAE6.920e-852.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJS7_9PHAE8.460e-853.19Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JI26_9PHAE9.070e-851.06Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXC7_9PHAE3.340e-751.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K3W2_9PHAE4.370e-663.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig178contigP-littoralis_Contig178:259098..259584 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size487
Hectar predicted targeting categoryother localisation
Exons1
Cds size312
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789853.3814023-UTR-P-littoralis_Contig178:259097..2591061680789853.3814023-UTR-P-littoralis_Contig178:259097..259106Pylaiella littoralis U1_48UTRP-littoralis_Contig178 259098..259106 -
1680789853.4011257-UTR-P-littoralis_Contig178:259418..2595841680789853.4011257-UTR-P-littoralis_Contig178:259418..259584Pylaiella littoralis U1_48UTRP-littoralis_Contig178 259419..259584 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789853.3928676-CDS-P-littoralis_Contig178:259106..2594181680789853.3928676-CDS-P-littoralis_Contig178:259106..259418Pylaiella littoralis U1_48CDSP-littoralis_Contig178 259107..259418 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig178.42.1prot_P-littoralis_Contig178.42.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig178 259107..259418 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig178.42.1

>prot_P-littoralis_Contig178.42.1 ID=prot_P-littoralis_Contig178.42.1|Name=mRNA_P-littoralis_Contig178.42.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=104bp
MFCRWLRPRVFMGLDDPASLTLFRERRPVCGPCTYWGLFVRKPSRTERAD
VERFLFRKDCEKMRQKTTCWRSRRTTRRSLFARGSSVCKVYFVVANMSHE
RLR*
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mRNA from alignment at P-littoralis_Contig178:259098..259584-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig178.42.1 ID=mRNA_P-littoralis_Contig178.42.1|Name=mRNA_P-littoralis_Contig178.42.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=487bp|location=Sequence derived from alignment at P-littoralis_Contig178:259098..259584- (Pylaiella littoralis U1_48)
GCAGGCTGCTTTTGACGCGAGCATTAGCCTGGGAGCCAAAGGGGGAGGCG
TTCAGCTAACGAGGAAGGACTGCTTTACCCAGGCGTGCCGTGCGGTATGG
CCTGGGGAAGATTCCATTTCGGCGGCCATAGCTGAGGTCCTCCTGCTGTA
ACTTTTATTGAGCACCATGTTTTGCCGATGGCTCCGTCCTCGAGTGTTCA
TGGGTTTGGATGACCCGGCGTCGTTGACACTGTTTAGAGAACGCCGACCT
GTGTGCGGGCCTTGTACTTACTGGGGGCTTTTCGTGAGAAAGCCGTCCCG
GACCGAGCGTGCGGACGTAGAACGTTTCCTATTTCGGAAGGACTGTGAAA
AAATGCGCCAAAAAACAACGTGTTGGCGGAGTCGGCGCACTACGAGAAGG
AGTCTGTTCGCGCGCGGAAGTAGTGTTTGCAAGGTCTATTTTGTCGTGGC
AAATATGAGCCATGAACGTCTCCGGTGATAATTCGCT
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Coding sequence (CDS) from alignment at P-littoralis_Contig178:259098..259584-

>mRNA_P-littoralis_Contig178.42.1 ID=mRNA_P-littoralis_Contig178.42.1|Name=mRNA_P-littoralis_Contig178.42.1|organism=Pylaiella littoralis U1_48|type=CDS|length=312bp|location=Sequence derived from alignment at P-littoralis_Contig178:259098..259584- (Pylaiella littoralis U1_48)
ATGTTTTGCCGATGGCTCCGTCCTCGAGTGTTCATGGGTTTGGATGACCC
GGCGTCGTTGACACTGTTTAGAGAACGCCGACCTGTGTGCGGGCCTTGTA
CTTACTGGGGGCTTTTCGTGAGAAAGCCGTCCCGGACCGAGCGTGCGGAC
GTAGAACGTTTCCTATTTCGGAAGGACTGTGAAAAAATGCGCCAAAAAAC
AACGTGTTGGCGGAGTCGGCGCACTACGAGAAGGAGTCTGTTCGCGCGCG
GAAGTAGTGTTTGCAAGGTCTATTTTGTCGTGGCAAATATGAGCCATGAA
CGTCTCCGGTGA
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