mRNA_P-littoralis_Contig178.36.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig178.36.1
Unique NamemRNA_P-littoralis_Contig178.36.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig178.36.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig178contigP-littoralis_Contig178:232485..233615 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size397
Hectar predicted targeting categoryother localisation
Exons2
Cds size348
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789852.6112638-CDS-P-littoralis_Contig178:232484..2327661680789852.6112638-CDS-P-littoralis_Contig178:232484..232766Pylaiella littoralis U1_48CDSP-littoralis_Contig178 232485..232766 +
1680789852.6201885-CDS-P-littoralis_Contig178:233501..2335671680789852.6201885-CDS-P-littoralis_Contig178:233501..233567Pylaiella littoralis U1_48CDSP-littoralis_Contig178 233502..233567 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789852.6349201-UTR-P-littoralis_Contig178:233567..2336151680789852.6349201-UTR-P-littoralis_Contig178:233567..233615Pylaiella littoralis U1_48UTRP-littoralis_Contig178 233568..233615 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig178.36.1prot_P-littoralis_Contig178.36.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig178 232485..233567 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig178.36.1

>prot_P-littoralis_Contig178.36.1 ID=prot_P-littoralis_Contig178.36.1|Name=mRNA_P-littoralis_Contig178.36.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=116bp
KKGVYRRLGRQRPHRVWWLAFCGEGNPAPNISPPRDFDERVRIGLLVAGE
DAVAEDRSAAAQEKETWASGGIARAQDEEGCCCWGGSDRQSSPKVILSSP
TGVNNSSTADRGNGL*
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mRNA from alignment at P-littoralis_Contig178:232485..233615+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig178.36.1 ID=mRNA_P-littoralis_Contig178.36.1|Name=mRNA_P-littoralis_Contig178.36.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1131bp|location=Sequence derived from alignment at P-littoralis_Contig178:232485..233615+ (Pylaiella littoralis U1_48)
AAAAAGGGCGTGTATCGACGCCTTGGTAGACAGAGACCACATAGGGTTTG
GTGGCTTGCGTTTTGTGGAGAGGGGAACCCTGCCCCAAATATTAGCCCTC
CACGGGACTTCGACGAAAGGGTTAGGATAGGATTGCTGGTTGCTGGAGAG
GATGCCGTAGCTGAGGATCGCAGTGCCGCTGCTCAGGAGAAGGAGACATG
GGCGTCTGGCGGTATCGCCAGAGCACAAGATGAGGAAGGCTGCTGCTGCT
GGGGAGGAAGTGACCGACAAAGTTCGCCAAAGGTGCGGTTCTCGTCGAAA
TGGTTCATTTTTTGTGTATGATTGATAAGTCTGTCCTGCGTTGGCAATGG
TACGTTGATGTTACGCTTTCGTGTCCGTAATTTGGTTATTTGTAGAGCTT
CCCCTCTAATATCAAGTACTTGTAGAATAGCGAGAGACAGCGAGAGACAT
TGCCGTATGATAGGGTTAGTAAGATACGACACCTGCTGAAGCGATTTAAA
ATCACAGATACTTCCACACCCAAGAGAGCATCACCATCAAACGATACGTT
TACTCTCGATACGTTTCCAACACGCCCTTTACGGCACCGACATATGTAAT
GAATCGTGCTTTACAAATCGGTCCAGCGGGGTCCGTCGTATCTTACGGCA
CCCGCGGAACACACGCGTCACGCCGCCACGCACACCACGCTGTAGAGCTG
TATTCTGCTGTACAGCTGTATTCTACTGTACTGCTGCTGCTTTACTGCTG
CTGCTGTACTGCTGCTGCTGCTTCGCTGCTTATTCTGCTGTACTGCTGCT
GCTACTTCGCTGCTGTTGCTGCTGTACTGCTGCTGCTGGGATGTGAAATG
ATGTTTCATCTCCAAGTATCATACTCTCACTCGAGACGGAAAGCATAACA
GTGGCACAGTTACGACAGCACAAGAACAGAAGTACAGCAAGACAAGAGCG
TTGTGTGTGCGGCAGGCTGCGGCGTGATGTGGAAATGCTGTGATGCGATA
TTTTAACACGAAAACAGGTCATATTATCATCACCTACAGGCGTCAACAAC
AGTAGTACAGCCGACCGTGGGAACGGACTGTAGACATGCTCGTAATGCTG
GTGTGGTGTCGCTGGCGTAGGGGTGGAAGGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig178:232485..233615+

>mRNA_P-littoralis_Contig178.36.1 ID=mRNA_P-littoralis_Contig178.36.1|Name=mRNA_P-littoralis_Contig178.36.1|organism=Pylaiella littoralis U1_48|type=CDS|length=348bp|location=Sequence derived from alignment at P-littoralis_Contig178:232485..233615+ (Pylaiella littoralis U1_48)
AAAAAGGGCGTGTATCGACGCCTTGGTAGACAGAGACCACATAGGGTTTG
GTGGCTTGCGTTTTGTGGAGAGGGGAACCCTGCCCCAAATATTAGCCCTC
CACGGGACTTCGACGAAAGGGTTAGGATAGGATTGCTGGTTGCTGGAGAG
GATGCCGTAGCTGAGGATCGCAGTGCCGCTGCTCAGGAGAAGGAGACATG
GGCGTCTGGCGGTATCGCCAGAGCACAAGATGAGGAAGGCTGCTGCTGCT
GGGGAGGAAGTGACCGACAAAGTTCGCCAAAGGTCATATTATCATCACCT
ACAGGCGTCAACAACAGTAGTACAGCCGACCGTGGGAACGGACTGTAG
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