mRNA_P-littoralis_Contig178.22.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig178.22.1
Unique NamemRNA_P-littoralis_Contig178.22.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig178.22.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig178contigP-littoralis_Contig178:145477..146064 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size211
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size144
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789852.5558121-UTR-P-littoralis_Contig178:145476..1455241680789852.5558121-UTR-P-littoralis_Contig178:145476..145524Pylaiella littoralis U1_48UTRP-littoralis_Contig178 145477..145524 +
1680789852.5820055-UTR-P-littoralis_Contig178:146045..1460641680789852.5820055-UTR-P-littoralis_Contig178:146045..146064Pylaiella littoralis U1_48UTRP-littoralis_Contig178 146046..146064 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789852.564643-CDS-P-littoralis_Contig178:145524..1455641680789852.564643-CDS-P-littoralis_Contig178:145524..145564Pylaiella littoralis U1_48CDSP-littoralis_Contig178 145525..145564 +
1680789852.573149-CDS-P-littoralis_Contig178:145941..1460451680789852.573149-CDS-P-littoralis_Contig178:145941..146045Pylaiella littoralis U1_48CDSP-littoralis_Contig178 145942..146045 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig178.22.1prot_P-littoralis_Contig178.22.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig178 145525..146045 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig178.22.1

>prot_P-littoralis_Contig178.22.1 ID=prot_P-littoralis_Contig178.22.1|Name=mRNA_P-littoralis_Contig178.22.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=48bp
MASKSTPGLRIPAAVAVSRATITETSVSKESGLGRSPSSVGALCCEV*
back to top

mRNA from alignment at P-littoralis_Contig178:145477..146064+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig178.22.1 ID=mRNA_P-littoralis_Contig178.22.1|Name=mRNA_P-littoralis_Contig178.22.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=588bp|location=Sequence derived from alignment at P-littoralis_Contig178:145477..146064+ (Pylaiella littoralis U1_48)
AGCGGAGTAGACAGGCAAAGAAAGATCAGGGCACCAAAGGCAAACACTAT
GGCAAGCAAATCCACCCCTGGCCTGCGCATTCCAGCAGGTGTGGCGATAC
GTGTGGTGAAAATATACAGCAGCAGCGACCACTTGAATCGGAATCCTTTA
TTTCGCCGCTTGTCTGCCTCTTTTTTCTTGCTGCACCAACCTACACCCTC
TTCTGGCAACTCTTTTTAAGCCAGCGACCGAGCCGTGACAACCTTGTAGC
GGGAGCGCTGTCGAGGGCCACTATCACGTAGACCTCTGCTTCGAAAGAAT
CGGACTTCGGGGGCTTTGTAGCTCGGATGCTGTCTGATGCCGTGAATTAT
TGTTTGTGATTGGCACCAAAAAACATCGCCTTCTCAATTTGGGGTCGCAT
CAACAACACACACCCTCTCCTTGCGACCCTCTTTTCTCCTCACACAACCT
GTGACAACTGCTTAGCGGTGGCGGTATCGAGGGCCACCATCACGGAGACT
TCTGTTTCGAAAGAATCAGGACTTGGGAGGTCTCCAAGCTCCGTTGGTGC
CCTGTGTTGTGAAGTGTAGTTTGTTCGGATTTCTCACG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig178:145477..146064+

>mRNA_P-littoralis_Contig178.22.1 ID=mRNA_P-littoralis_Contig178.22.1|Name=mRNA_P-littoralis_Contig178.22.1|organism=Pylaiella littoralis U1_48|type=CDS|length=144bp|location=Sequence derived from alignment at P-littoralis_Contig178:145477..146064+ (Pylaiella littoralis U1_48)
ATGGCAAGCAAATCCACCCCTGGCCTGCGCATTCCAGCAGCGGTGGCGGT
ATCGAGGGCCACCATCACGGAGACTTCTGTTTCGAAAGAATCAGGACTTG
GGAGGTCTCCAAGCTCCGTTGGTGCCCTGTGTTGTGAAGTGTAG
back to top