mRNA_P-littoralis_Contig178.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig178.1.1
Unique NamemRNA_P-littoralis_Contig178.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig178.1.1 vs. uniprot
Match: A0A6H5KBY2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBY2_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 3.710e-18
Identity = 56/107 (52.34%), Postives = 63/107 (58.88%), Query Frame = 2 
Query:  272 PRFRSLPARAPSNTV------SDANVAPGTSTTSSAVASTPWPGPDFKVSQVLPGSVYLWACNERGEGGGTSPVSRAEACAAWVVLTVSAEFLHL*AA*SVLYLHLW 574
            PR  S PARAP +TV      S+AN  PGT T      +TPWPG DF++ +VLP SVYLWAC ERGEG    PVSR+EA AAWVVL   A          V Y  LW
Sbjct:   81 PRSDSFPARAPVHTVGRGHDASEANNRPGTLT------ATPWPGKDFRLKKVLPDSVYLWACGERGEGDAPYPVSRSEAVAAWVVLISQA----------VCYAGLW 171
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig178.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KBY2_9PHAE3.710e-1852.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig178contigP-littoralis_Contig178:13297..16627 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size583
Hectar predicted targeting categoryother localisation
Exons2
Cds size528
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789852.4894073-UTR-P-littoralis_Contig178:13296..133091680789852.4894073-UTR-P-littoralis_Contig178:13296..13309Pylaiella littoralis U1_48UTRP-littoralis_Contig178 13297..13309 +
1680789852.5271416-UTR-P-littoralis_Contig178:16585..166271680789852.5271416-UTR-P-littoralis_Contig178:16585..16627Pylaiella littoralis U1_48UTRP-littoralis_Contig178 16586..16627 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789852.5029268-CDS-P-littoralis_Contig178:13309..135001680789852.5029268-CDS-P-littoralis_Contig178:13309..13500Pylaiella littoralis U1_48CDSP-littoralis_Contig178 13310..13500 +
1680789852.514001-CDS-P-littoralis_Contig178:16248..165851680789852.514001-CDS-P-littoralis_Contig178:16248..16585Pylaiella littoralis U1_48CDSP-littoralis_Contig178 16249..16585 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig178.1.1prot_P-littoralis_Contig178.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig178 13310..16585 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig178.1.1

>prot_P-littoralis_Contig178.1.1 ID=prot_P-littoralis_Contig178.1.1|Name=mRNA_P-littoralis_Contig178.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=176bp
MAESDNGGDSADATFTAQQQAHNAHHVVGSMNHSGSRLAAQIQDPVQATA
GGRDEGERRAEATSDDPGEEVPELTMLLARDRCPLLPRFRSLPARAPSNT
VSDANVAPGTSTTSSAVASTPWPGPDFKVSQVLPGSVYLWACNERGEGGG
TSPVSRAEACAAWVVLTVSAEFLHL*
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mRNA from alignment at P-littoralis_Contig178:13297..16627+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig178.1.1 ID=mRNA_P-littoralis_Contig178.1.1|Name=mRNA_P-littoralis_Contig178.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3331bp|location=Sequence derived from alignment at P-littoralis_Contig178:13297..16627+ (Pylaiella littoralis U1_48)
GAGCGCACGAAGCATGGCGGAGAGTGATAACGGCGGCGATTCCGCCGATG
CTACTTTTACTGCTCAACAGCAAGCCCACAACGCACACCATGTGGTCGGC
TCGATGAATCACTCGGGCTCTAGGCTGGCGGCGCAAATCCAGGATCCTGT
GCAGGCCACAGCGGGAGGGAGAGACGAGGGCGAGCGCAGAGCAGAAGCTA
CCAGGTATGCCACAACCATTGATCACGGCCGGTGAGAGAAACCGTGCTTA
TACTACACGGTGGCCCGTCTGAGACTTTCATTCTCTTGCCTCTTCTCTCT
TTTCTCTCTTGTACTGCCGTACATCGTGCATGTTCATCTGTCGTGCGTTC
TATTCACCGTCTCTCCTCTGCATCTGGCATCACCGCCTCTTAATATTATT
CAATATTGCTGGTTTCCTCTCTCTTCTCTGTTTTCTCTCTTATCTCCTGC
CATTCTCTCATTTCACACGATATTCTCCGCCCGGCGCCTTTGCGCCGGTG
CACACGTATGTGCGTGTGAAAGTGTGTGTCTTATTTTATTTTTTTCCGAC
TTTTTCTGAGAATACGCTCCATCACTCAATGGACCGGTGGCGCGAAGCCC
CTAAAACCTGTGTTGTCGTGTCCATGTTTCGAACTATACATCCCCCAACT
TCACTGCATCCCACTCTTTCTCAGACCCTCGCAGGGCAGCAGTAAAAAAG
AGAAGCGCTCAGGGGCCTACGTGAAGGAACGGGGGTATCTCCATAGTTTC
CATTTCCACGATCGTTGAAATAGTAATGTTTCAACGTTCATCAAAATGTA
GCAGGCCATTATATTTTGGCCTTCTCTCTGCGTTATGATTTTCATTTACG
TGACTATACGAAGTATTACTATAATATGTGAAAATATTGCGTTTGTATCG
CTCCGATAATCGAGCGGGGGCACGATGCGCCTAAAACCTTTTTTTCCTAT
GACAAATTGCCTTTCCGCCAGAATCGCTCGGATTTAGCCTCTCGGCTCTG
ATGGGGCTTCGTTGGCATTTTGTTTTTACCGAGCGCCCACAGGCCTCCGT
TGCGCCATTCTTTGCCGGCATCACCCGGCTCTTCTACAAGTACCGATTGT
TCAGACAAGCACAGCGAAATATGCAAGGTGGAGAACAAATATGTATTGTC
CAGACTGGCGTCCAAAACAAATGACATGACAACACGCATACACAGACAAC
TGTAATTGATACACACGGCGAATTATCGTGGCATGTTGTTCGCGGCACAA
ACGGAAATTTCAACTGGTAGCGACCAGTTCGGCAGAATATTCCCCGACCG
AAATCGAAGCATGTATGTACGCAGATCAAATTTAATCGAATCCATTTGAA
CTTATGCACGACATACGGGGCCATATTTTTGAAGCAGTGGCCATTTTGTC
CCATCAGGTGGTGACCAATGCTCCTGCGCAGTCAAGTGTGTTCCCGAAGG
TTTGCCGATTGATCAAATTCAACCGGGTGACGTTGTGCACGGGAGCGGTA
GGCGAATCTAGGCACTTGGCTCATCGCGAAGGTGTAGCCCGTGGGCACGA
AACGGGTCGAGCCCTGCAGGTGTTGCTGGCACAGCACTCCGGACTCGTTA
CTTTCGTAACATCTTCTTCAAGTGTTGTTCGCACCTGGTCAAATGCTTAA
CGCAGTGATGGATTCGCTCGCCAGTGTGTTCTCGTACGGAGGCCTTTTTT
GAGACGAATTCTCCACTGCTGTTTTTCGTGGAAGGAATATTTTCATGATT
ATTGCTGTTCCAACGATATTTGAAATGCTCTCACGTTCGTCGAAAAACGT
TGCCGTGAGAGAGAGTCTCCAAGAGAATACTTCGTACTACAGAAGTCAAA
AATGGTTGTCGAATGGGAAAAAAGAGTTGATGTGGCCGACGATAAATCAC
GGAGAGATACTTTTTCGACACGCAACTATCGAGAACTTCATTAAAATATG
TGTCTTGAGTCTTGTTTTGCGCGAGGACGGCCAGTAGATAGAGTGTGATG
GCATCCGTGCCCTTCAGAGCGTTCAAGAGGAAGCTAACGCGGGAAGGAGG
CGCACTGACTTCAGCCGTTTGTCGGCTGGAAATTTGTTTCACTTATCGAA
ATTAAGTGAAAAGAACGCTTGTTCGAGCACATCCTGGCTGTGCAAAGTTA
TCTCGTTAGAAAGACACATCCCATCTGCTGCTGAGGAAAACTTTGAAAAT
CAAAAACGGGTTCACGATCCGCCACGCGGGGAAAAAAGCTTATCTCTTTA
CGGCCGCGCTGGCTGCAATTTAAAGTAAGGGGTTGGAACGTTGGGGCATT
TTGCGAGAGGTAAACAACACAAGACTTGAACATAGGCCCGGAATTCGCAC
AAATGAGTGCAGCTGTACTTTGAGGGGGCAACAAAATCGTGAAAAACTTC
TCTTGAGGAGCTATTTGGGGCTTCAATTGAAAGGTGCTCCTCCAGGGCAT
TTTCGAAAGCCTCTGTATTTTGTTGACTTAAAGCATCGCTTGCTCGCTTC
CTCTACGAAAGTAATCGAAACAACGAATCGAAACATGAGGTAGTTTTGTA
ATTTCGGATATCGGGCAGAGGGACGGGGAGACTGGCGAAGGGGCAAGCGT
CAAGTTCGCATTAGCGTGAGGTTGCGAAGGCTCGGCAAATGTAAGAGTGG
TAACAACAAACATCTCAGCAGCATTGTTTCAGATAGGAAGAGAAAAATCT
CCTTCAGATGATGTTTTATTCATTGATGGAAAGCCATGAATTCCGCTTCG
GATTTGTATTTTGTAAGCTTGCAAGTAGCCAACATTGTCATCGGGTGGCA
CAATGCACACGTAACATTCGCTTCGGGCGCAACTACTCGAATACTCTCTT
TTGCGTCACGATTGTCTGCTAAAGGTCTCCCATCCTGAATGTTGCATGTG
TGTTCTACGGGCCATCCCGACCTACTACGGGCGATATATATTTCTGATAC
AGCGACGATCCCGGGGAGGAGGTGCCTGAGCTGACAATGTTGCTGGCGAG
GGATCGCTGCCCGTTGCTGCCGAGGTTCAGATCCTTACCTGCGCGTGCAC
CCAGTAATACGGTCAGTGACGCAAACGTCGCGCCAGGGACAAGCACCACA
TCGAGTGCAGTTGCAAGTACGCCCTGGCCTGGACCCGATTTCAAGGTTTC
GCAGGTTCTGCCCGGCTCAGTGTATCTCTGGGCATGCAACGAGCGTGGCG
AGGGAGGCGGCACGTCTCCCGTCTCGCGCGCTGAGGCTTGCGCAGCGTGG
GTCGTCCTCACTGTGAGCGCCGAGTTTCTCCACCTTTGAGCCGCTTGATC
TGTGCTATACCTCCATCTGTGGGGAAAAAAT
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Coding sequence (CDS) from alignment at P-littoralis_Contig178:13297..16627+

>mRNA_P-littoralis_Contig178.1.1 ID=mRNA_P-littoralis_Contig178.1.1|Name=mRNA_P-littoralis_Contig178.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=528bp|location=Sequence derived from alignment at P-littoralis_Contig178:13297..16627+ (Pylaiella littoralis U1_48)
ATGGCGGAGAGTGATAACGGCGGCGATTCCGCCGATGCTACTTTTACTGC
TCAACAGCAAGCCCACAACGCACACCATGTGGTCGGCTCGATGAATCACT
CGGGCTCTAGGCTGGCGGCGCAAATCCAGGATCCTGTGCAGGCCACAGCG
GGAGGGAGAGACGAGGGCGAGCGCAGAGCAGAAGCTACCAGCGACGATCC
CGGGGAGGAGGTGCCTGAGCTGACAATGTTGCTGGCGAGGGATCGCTGCC
CGTTGCTGCCGAGGTTCAGATCCTTACCTGCGCGTGCACCCAGTAATACG
GTCAGTGACGCAAACGTCGCGCCAGGGACAAGCACCACATCGAGTGCAGT
TGCAAGTACGCCCTGGCCTGGACCCGATTTCAAGGTTTCGCAGGTTCTGC
CCGGCTCAGTGTATCTCTGGGCATGCAACGAGCGTGGCGAGGGAGGCGGC
ACGTCTCCCGTCTCGCGCGCTGAGGCTTGCGCAGCGTGGGTCGTCCTCAC
TGTGAGCGCCGAGTTTCTCCACCTTTGA
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