prot_P-littoralis_Contig177.84.1 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig177.84.1
Unique Nameprot_P-littoralis_Contig177.84.1
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length162
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig177.84.1 vs. uniprot
Match: A0A6H5KVP2_9PHAE (PX domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVP2_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 2.550e-16
Identity = 73/140 (52.14%), Postives = 85/140 (60.71%), Query Frame = 0 
Query:   28 GNVRLQHNLRNDGRNDPWGDQ--NHSGNAPVTNQQHQRPQQDQPDLLGSGALSGLVVDPQ-LGDFRGGDGEAAAAP-RGLLFKTFQLEQXXXXXXXXXXXXXXXXXXXXLQQGISRFGS-GLDGLLGAAPP-RDDPSFFD 161
            G   ++++ R D R DPWGDQ  N+SGN       +  P+ DQ  L GSGALSGL +DPQ LG F GG  EAA +P RGLLFKT Q + XXXXXX               QQG+SRFGS GLDG LG  PP RDD  F+D
Sbjct: 1772 GGAVVRNDPRLDQRLDPWGDQGSNNSGN-------NSHPRHDQ-QLQGSGALSGLGIDPQRLGGFGGGLSEAAPSPPRGLLFKTLQSQXXXXXXXKP-------------QQGVSRFGSSGLDGFLGGMPPPRDDSLFYD 1890
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig177.84.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KVP2_9PHAE2.550e-1652.14PX domain-containing protein n=1 Tax=Ectocarpus sp... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 110..130
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..19
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 45..72
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..101
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 139..161

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig177contigP-littoralis_Contig177:413502..413987 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig177.84.1mRNA_P-littoralis_Contig177.84.1Pylaiella littoralis U1_48mRNAP-littoralis_Contig177 412410..414050 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig177.84.1 ID=prot_P-littoralis_Contig177.84.1|Name=mRNA_P-littoralis_Contig177.84.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=162bp
MRGSRLSSDQSQQHKQLQRDLGELSGGGNVRLQHNLRNDGRNDPWGDQNH
SGNAPVTNQQHQRPQQDQPDLLGSGALSGLVVDPQLGDFRGGDGEAAAAP
RGLLFKTFQLEQQQQQQRQQQQQQQLLLQQQQLQQGISRFGSGLDGLLGA
APPRDDPSFFD*
back to top