mRNA_P-littoralis_Contig177.84.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig177.84.1
Unique NamemRNA_P-littoralis_Contig177.84.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig177.84.1 vs. uniprot
Match: A0A6H5KVP2_9PHAE (PX domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVP2_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 4.470e-14
Identity = 86/178 (48.31%), Postives = 104/178 (58.43%), Query Frame = 1 
Query:   37 VIGG-GQDTDMRGSRLSSDQSQQH-KQLQRDLGELSGGGNVRLQHNLRNDGRNDPWGDQ--NHSGNAPVTNQQHQRPQQDQPDLLGSGALSGLVVDPQ-LGDFRGGDGEAAAAP-RGLLFKTFQLEQXXXXXXXXXXXXXXXXXXXXLQQGISRFGS-GLDGLLGAAPP-RDDPSFFD 546
            V+GG G D +     L ++++  H K+LQ    +  GG  VR  ++ R D R DPWGDQ  N+SGN       +  P+ DQ  L GSGALSGL +DPQ LG F GG  EAA +P RGLLFKT Q + XXXXXX               QQG+SRFGS GLDG LG  PP RDD  F+D
Sbjct: 1738 VVGGXGGDLNAMWDDLQAERALPHAKKLQNQ--QQMGGAVVR--NDPRLDQRLDPWGDQGSNNSGN-------NSHPRHDQ-QLQGSGALSGLGIDPQRLGGFGGGLSEAAPSPPRGLLFKTLQSQXXXXXXXKP-------------QQGVSRFGSSGLDGFLGGMPPPRDDSLFYD 1890
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig177.84.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KVP2_9PHAE4.470e-1448.31PX domain-containing protein n=1 Tax=Ectocarpus sp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig177contigP-littoralis_Contig177:412410..414050 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1641
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionnucleotidyltransferase family protein
Ec32 orthologEc-15_003420.2
Cds size486
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789852.179099-UTR-P-littoralis_Contig177:412409..4135011680789852.179099-UTR-P-littoralis_Contig177:412409..413501Pylaiella littoralis U1_48UTRP-littoralis_Contig177 412410..413501 -
1680789852.2008166-UTR-P-littoralis_Contig177:413987..4140501680789852.2008166-UTR-P-littoralis_Contig177:413987..414050Pylaiella littoralis U1_48UTRP-littoralis_Contig177 413988..414050 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789852.1904638-CDS-P-littoralis_Contig177:413501..4139871680789852.1904638-CDS-P-littoralis_Contig177:413501..413987Pylaiella littoralis U1_48CDSP-littoralis_Contig177 413502..413987 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig177.84.1prot_P-littoralis_Contig177.84.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig177 413502..413987 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig177.84.1

>prot_P-littoralis_Contig177.84.1 ID=prot_P-littoralis_Contig177.84.1|Name=mRNA_P-littoralis_Contig177.84.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=162bp
MRGSRLSSDQSQQHKQLQRDLGELSGGGNVRLQHNLRNDGRNDPWGDQNH
SGNAPVTNQQHQRPQQDQPDLLGSGALSGLVVDPQLGDFRGGDGEAAAAP
RGLLFKTFQLEQQQQQQRQQQQQQQLLLQQQQLQQGISRFGSGLDGLLGA
APPRDDPSFFD*
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mRNA from alignment at P-littoralis_Contig177:412410..414050-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig177.84.1 ID=mRNA_P-littoralis_Contig177.84.1|Name=mRNA_P-littoralis_Contig177.84.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1641bp|location=Sequence derived from alignment at P-littoralis_Contig177:412410..414050- (Pylaiella littoralis U1_48)
GGGGTGGAAGGAGATCTCGGCCACCTCGGGGTTGGTGTTATCGGAGGGGG
GCAAGATACAGACATGAGGGGGTCGCGATTAAGCTCAGACCAGTCGCAGC
AACACAAGCAGCTTCAACGTGATTTGGGAGAGCTAAGTGGCGGTGGGAAC
GTAAGGCTGCAGCACAACCTGCGGAATGATGGGCGAAACGATCCCTGGGG
GGACCAGAACCACAGTGGCAACGCCCCTGTCACCAACCAGCAGCACCAGC
GGCCGCAGCAGGATCAGCCGGACCTGCTAGGCAGCGGCGCCCTGTCTGGC
CTAGTCGTCGACCCCCAACTTGGGGATTTTCGAGGTGGAGATGGCGAAGC
GGCGGCTGCTCCTCGCGGACTCTTGTTCAAGACGTTCCAGTTAGAGCAAC
AGCAGCAGCAGCAGCGGCAGCAGCAACAGCAACAGCAGCTGCTGCTCCAA
CAGCAGCAGCTGCAGCAGGGTATCTCGCGCTTTGGTTCGGGGCTGGATGG
TCTTCTGGGGGCTGCGCCGCCGAGAGACGACCCATCGTTCTTCGACTAAA
ACCAAAACTATGCCGCGACATCGATCCGATGATGAACAGCGTGCGTACGC
ACGTGTGTTTTTCAACCGATGGAAGGAAGGGGGCGTCGGGGCACGAGGTA
TATGCATGCATTACATTTCTCCGCCCGGTTGTGCCGGCTTTGATAGAGAA
CGCTAGTGGTTTGGGAGGCCAAGCGCGAAACGACTGGATGAAGTGAACTA
AGGAGGACAGCGAGCAGTGGATATAGTGAGTGAGAAGAACGAGGCCGCAG
AAACCGCAGAGGAAGCGGCGGAAGGAGTCCACGTTCGTCGATGAGAACGG
GATTTTTTTAGGGAATGTTCGCCTAGAATGTAGTGGTGTTTTTGGGGAAG
ACACAATTGATTTGCTGTCGGGCTTGGAGCTTGTCAACTGTAAAGAATAT
CGACGTGAAACATTTAAGTTCATATCTGGTACGTAAAAAGCGGAAATCCT
AGAGGATGATATGCGAGGTTAGTCTTACACGTGCAGCACCAACATTGGTG
CTACGCGAGGGGGGGGGGGTAGACACATTCCCGCGATCGCGCACGTGGAA
CTGGGTCTGTACTTGTACGTTTTTTGTACAAGAATTTTGTGTCGCATCTG
CTGTGCATTTGGTGTGTGTGGTGTCTTTTTGTGGGATTTGTTTTCCACGT
TCACTGCACCTTTGGCTATTTTGCGTGTGGACCGCACATGTCCCCCTGCG
CGTAAGGTTGGGATATTTCTTAGCAGCGGGGCAGTGGCAGGGATGGGCAG
GAGGGAGGGAGGGCGAGGGAGGGCAGGATAGTATGTCGATGTTGGTTGCT
GTTGGTTGCAAGTAACGAAGACTAGATTTTCCTGTGTGAACATCGACAGA
GTTTCTCGAAAGGAACTGCCATTTAGATCTTTCGGTATTTGTACGCAGCT
TTGCGGCAGTTGAGCACGAGACAAAAAGCATAGGCGGCCACCTTTTCCCG
TCGCTCGCTTCTCCTGCGTGCGCCTTGCTCTCTTGCCTTTCGCAGATCGG
GCAGCACTTTTTTTTTTTTTTTTTCGGGAAAGCGTTGTTGTTGGCCGTGC
ATATTTTTCACAATTTCAGACTATTGTAGAGGGTAGGGTTT
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Coding sequence (CDS) from alignment at P-littoralis_Contig177:412410..414050-

>mRNA_P-littoralis_Contig177.84.1 ID=mRNA_P-littoralis_Contig177.84.1|Name=mRNA_P-littoralis_Contig177.84.1|organism=Pylaiella littoralis U1_48|type=CDS|length=486bp|location=Sequence derived from alignment at P-littoralis_Contig177:412410..414050- (Pylaiella littoralis U1_48)
ATGAGGGGGTCGCGATTAAGCTCAGACCAGTCGCAGCAACACAAGCAGCT
TCAACGTGATTTGGGAGAGCTAAGTGGCGGTGGGAACGTAAGGCTGCAGC
ACAACCTGCGGAATGATGGGCGAAACGATCCCTGGGGGGACCAGAACCAC
AGTGGCAACGCCCCTGTCACCAACCAGCAGCACCAGCGGCCGCAGCAGGA
TCAGCCGGACCTGCTAGGCAGCGGCGCCCTGTCTGGCCTAGTCGTCGACC
CCCAACTTGGGGATTTTCGAGGTGGAGATGGCGAAGCGGCGGCTGCTCCT
CGCGGACTCTTGTTCAAGACGTTCCAGTTAGAGCAACAGCAGCAGCAGCA
GCGGCAGCAGCAACAGCAACAGCAGCTGCTGCTCCAACAGCAGCAGCTGC
AGCAGGGTATCTCGCGCTTTGGTTCGGGGCTGGATGGTCTTCTGGGGGCT
GCGCCGCCGAGAGACGACCCATCGTTCTTCGACTAA
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