mRNA_P-littoralis_Contig177.77.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig177.77.1
Unique NamemRNA_P-littoralis_Contig177.77.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig177.77.1 vs. uniprot
Match: D7FN93_ECTSI (Type-4 uracil-DNA glycosylase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN93_ECTSI)

HSP 1 Score: 363 bits (932), Expect = 3.230e-118
Identity = 188/273 (68.86%), Postives = 211/273 (77.29%), Query Frame = 2 
Query:  134 IAVLALSSRLCLAWQAPTSPHSSRPCFVGVSSP---RRCGSAVPFMGRSRFGATRQSRTRVAV--GDVVVPVRDDTKDHRDFVDKLLRLTGDPLEQEGGRIVVFRGNPEAQLMLIGEAPGAEEDRLGVPFVGRSGQLLDDVLRAVGLDPDVDVYVSNIVRRRPIDNRAPTPEEMEFYLPLLLEEIRLVAPKVIVTLGASSTKALLPFETRGITKVRGQWADPGTVAQIHGGALRDKWIMPWFHPSYLLRNAGERSRQEGGVRWHTRNDLHHVK 937
            +AV  L S + LAWQAPTSP SS    V  +S     R  SA PFM R R   T+Q+    A       + +R D + HR FV+KLL LTGDPLE++GGR+VVFRG+P A LMLIGEAPGAEEDRLGVPFVGRSGQLLDD+LRAVG DP+ +VYVSNIVRRRPIDNR PTPEEM+FYLP LLEEI LV P VIV LGASSTKALLP+ETRGIT+ RGQWADP  +A+IHGG L D  IMPWFHPSYLLRN+GERSRQEGGVRWH RNDL  V+
Sbjct:   62 VAVFTLFSGISLAWQAPTSPRSSTNSLVSRASSCCRTRSRSAAPFM-RRRCATTQQNMAIKAATTSGFGMSMRGDAEGHRAFVEKLLTLTGDPLEEDGGRVVVFRGDPSASLMLIGEAPGAEEDRLGVPFVGRSGQLLDDMLRAVGFDPEREVYVSNIVRRRPIDNRTPTPEEMDFYLPFLLEEIGLVDPHVIVLLGASSTKALLPYETRGITRARGQWADPVALAEIHGGRLADMLIMPWFHPSYLLRNSGERSRQEGGVRWHARNDLREVR 333
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BLAST of mRNA_P-littoralis_Contig177.77.1 vs. uniprot
Match: A0A835YMS9_9STRA (Type-4 uracil-DNA glycosylase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMS9_9STRA)

HSP 1 Score: 232 bits (591), Expect = 1.920e-68
Identity = 118/202 (58.42%), Postives = 141/202 (69.80%), Query Frame = 2 
Query:  347 KDHRDFVDKLLRLTGDPLEQEGGRIVVFRGNPEAQLMLIGEAPGAEEDRLGVPFVGRSGQLLDDVLRAVGLDPDVDVYVSNIVRRRPIDNRAPTPEEMEFYLPLLLEEIRLVAPKVIVTLGASSTKALLPFETRGITKVRGQWADPGTVAQIHGGALRDKWIMPWFHPSYLLRNAGERSRQEGGVRWHTRNDLHHVKIALDE 952
            KDH +    LL LTGDPLE  GGRIVV+RG+P+A+LM++GEAPGA ED  G PFVGRSGQLLD +L+A G DP+ D+YVSNIVRRRP +NR PT  E+ +Y P LLEEIRLV P +I+T G  S +A+L  E RGITKVRGQW  PGT   +        W MPWFHPSYLLRN    ++ EGG +W T  D   V+   DE
Sbjct:   58 KDHAEMTAALLALTGDPLEPAGGRIVVYRGDPQAKLMVVGEAPGAMEDETGKPFVGRSGQLLDAILKAAGFDPETDLYVSNIVRRRPPENRDPTTAEIAYYRPWLLEEIRLVNPAIIITTGRWSMRAVLN-ERRGITKVRGQWYAPGTTPDLPAAT----WAMPWFHPSYLLRNP---TKDEGGPKWLTWVDAQEVRRKYDE 251
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BLAST of mRNA_P-littoralis_Contig177.77.1 vs. uniprot
Match: A0A3M1EZS2_9CHLR (Type-4 uracil-DNA glycosylase n=1 Tax=Caldilineae bacterium TaxID=2420332 RepID=A0A3M1EZS2_9CHLR)

HSP 1 Score: 209 bits (533), Expect = 1.500e-60
Identity = 109/200 (54.50%), Postives = 135/200 (67.50%), Query Frame = 2 
Query:  353 HRDFVDKLLRLTGDPLEQEGGRIVVFRGNPEAQLMLIGEAPGAEEDRLGVPFVGRSGQLLDDVLRAVGLDPDVDVYVSNIVRRRPIDNRAPTPEEMEFYLPLLLEEIRLVAPKVIVTLGASSTKALLPFETRGITKVRGQWADPGTVAQIHGGALRDKWIMPWFHPSYLLRNAGERSRQEGGVRWHTRNDLHHVKIALDE 952
            H+  V+ L  LTGDPLE  GG +V++RGNP A+LM+IGE PGAEEDRL  PFVGRSGQLLD +LRAV  DP+ DVY++N+V+RRP +NR PTPEE+ FY P L EEIRLV PK+I+  G  +   +L  E RGITKVRGQW + G            +WIMP FHP+YLLRN     R  G  +  T +D+  V+   DE
Sbjct:   30 HQALVEALENLTGDPLEPWGGNMVIYRGNPAAKLMVIGEGPGAEEDRLRKPFVGRSGQLLDKILRAVHFDPETDVYITNVVKRRPPENRDPTPEEINFYAPYLFEEIRLVDPKIIMLTGRYAMLTILG-EKRGITKVRGQWFERG-----------GRWIMPMFHPAYLLRNP---QRTPGSPKALTWDDIRAVRARYDE 214
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BLAST of mRNA_P-littoralis_Contig177.77.1 vs. uniprot
Match: A0A7C3BN30_9CHLR (Type-4 uracil-DNA glycosylase n=2 Tax=Chloroflexi TaxID=200795 RepID=A0A7C3BN30_9CHLR)

HSP 1 Score: 205 bits (521), Expect = 4.520e-59
Identity = 106/200 (53.00%), Postives = 134/200 (67.00%), Query Frame = 2 
Query:  353 HRDFVDKLLRLTGDPLEQEGGRIVVFRGNPEAQLMLIGEAPGAEEDRLGVPFVGRSGQLLDDVLRAVGLDPDVDVYVSNIVRRRPIDNRAPTPEEMEFYLPLLLEEIRLVAPKVIVTLGASSTKALLPFETRGITKVRGQWADPGTVAQIHGGALRDKWIMPWFHPSYLLRNAGERSRQEGGVRWHTRNDLHHVKIALDE 952
            H++ V+ L  L GDPLEQ GG IV++RGNP A+LM+IGE PGA EDRL  PFVGRSG+LLD +L AV  +P+ DVY+SN+VRRRP  NR P P+E+ FY P L EEIRL+ PK+I+ +G  +   +L  E RGITKVRGQW       Q  G     +WIMP FHP+YLLRN G+R      + W   +D+  V+   DE
Sbjct:   11 HQELVEALNNLGGDPLEQWGGNIVIYRGNPAAKLMIIGEGPGANEDRLRKPFVGRSGKLLDQILSAVNFNPEQDVYISNVVRRRPPKNRDPLPKEIAFYAPYLFEEIRLLDPKIILLIGRHAMMTILK-EKRGITKVRGQWF------QKDG-----RWIMPMFHPAYLLRNPGKRPGSPKSLTW---DDIRAVRAKYDE 195
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BLAST of mRNA_P-littoralis_Contig177.77.1 vs. uniprot
Match: A0A1W9W486_9CHLR (Type-4 uracil-DNA glycosylase n=1 Tax=Anaerolineaceae bacterium 4572_78 TaxID=1972460 RepID=A0A1W9W486_9CHLR)

HSP 1 Score: 192 bits (489), Expect = 2.660e-54
Identity = 97/202 (48.02%), Postives = 130/202 (64.36%), Query Frame = 2 
Query:  353 HRDFVDKLLRLTGDPLEQEGGRIVVFRGNPEAQLMLIGEAPGAEEDRLGVPFVGRSGQLLDDVLRAVGLDPDVDVYVSNIVRRRPIDNRAPTPEEMEFYLPLLLEEIRLVAPKVIVTLGASSTKALLPFETRGITKVRGQWADPGTVAQIHGGALRDKWIMPWFHPSYLLRNAGERSRQEGGVRWHTRNDLHHVKIALDEWR 958
            H+  V+ L  LT DPLE  G  +V++RG P+A LM+IGEAPGAEED++G PFVGRSGQLLD +L+AV  + + D+Y++N ++RRP +NR P  EE+E+Y P L EEIRLV PK+I+  G  +   +L  E RGITKVRGQW + G            +W+MP FHP+YLLRN  +       + W    D+  V+   DE R
Sbjct:   15 HQALVETLKNLTDDPLESTGSNMVIYRGYPKADLMIIGEAPGAEEDKIGKPFVGRSGQLLDKILQAVHFNIETDIYITNTLKRRPPNNRNPKQEELEYYFPFLAEEIRLVDPKIILLAGKYAMLTILQ-EKRGITKVRGQWVEQG-----------GRWVMPIFHPAYLLRNPRKTPGSPKALMW---EDIRAVRAKYDELR 201
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BLAST of mRNA_P-littoralis_Contig177.77.1 vs. uniprot
Match: W7TG57_9STRA (Type-4 uracil-DNA glycosylase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TG57_9STRA)

HSP 1 Score: 192 bits (488), Expect = 5.930e-53
Identity = 102/202 (50.50%), Postives = 135/202 (66.83%), Query Frame = 2 
Query:  353 HRDFVDKLLRLTGDPLEQEGGRIVVFRGNPEAQLMLIGEAPGAEEDRLGVPFVGRSGQLLDDVLRAVGLDPDVDVYVSNIVRRRPIDNRAPTPEEMEFYLPLLLEEIRLVAPKVIVTLGASSTKALLPFETRGITKVRGQWADP--GTVAQIHGGALRDKWIMPWFHPSYLLRNAGERSRQEGGVRWHTRNDLHHVKIALDE 952
            H DFV  L  L GDPL+ EG R+V+ RGN  A++M+IGEAPG  ED  G PFVGR+G+LLD +L +VGLD +  VY++N+V RRP +NR P+  E+ +YLP L+E +RLV P +I+  GA + KALLP E +GIT++RGQW +   GT   + G   R   +MP FHPSYLLRN    SR+  G +W T  D+  V+   DE
Sbjct:   83 HADFVQALQGLRGDPLQAEGTRVVIHRGNAGAKIMVIGEAPGETEDVEGKPFVGRAGKLLDAILASVGLD-ESSVYITNVVLRRPPNNRTPSASEVAWYLPYLMENVRLVDPLIILLAGACACKALLPLEKQGITRIRGQWFERRFGTEGGLDGQGSR--LVMPIFHPSYLLRNP---SRKVEGPKWLTWQDIQAVRRRYDE 278
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BLAST of mRNA_P-littoralis_Contig177.77.1 vs. uniprot
Match: C1FF23_MICCC (Type-4 uracil-DNA glycosylase n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1FF23_MICCC)

HSP 1 Score: 188 bits (478), Expect = 3.840e-52
Identity = 111/259 (42.86%), Postives = 150/259 (57.92%), Query Frame = 2 
Query:  218 GVSSPRRCGSAVPFMGRSRFGAT--------RQSRTRVAVGDVVVPVRDDTKDHRDFVDKLLR-LTGDPLEQEGGRIVVFRGNPEAQLMLIGEAPGAEEDRLGVPFVGRSGQLLDDVLRAVGLDPDVDVYVSNIVRRRPIDNRAPTPEEMEFYLPLLLEEIRLVAPKVIVTLGASSTKALLPFETRGITKVRGQWADPGTVAQIHGGALRDKWIMPWFHPSYLLRNAGERSRQEGGVRWHTRNDLHHVKIALDEWRMVE 967
            G++ PR   SA+P +G  R            R  R R    D     R  +    D +   LR LTGDPLE +GGRIV FRG+  A++M+IGEAPGAEED+LGVPFVGR+G+LLD++  +V L  D   YV+N+V+RRP++NR PT  E+E+Y   L EEIRL+ P +IV  G  S + LL     GITK+RG+W D           +  + +MP FHPSYLLRN  +       + W   +D+  VK  +DE  ++E
Sbjct:    4 GLALPRALASALP-LGNHRSSPRSVPPRAPPRWVRPRALASDA--DARSPSFSSLDELAHHLRSLTGDPLESDGGRIVTFRGDTNARVMIIGEAPGAEEDKLGVPFVGRAGKLLDEIFASVTLSTDRHCYVTNVVKRRPLNNRDPTAREIEWYRGYLREEIRLLDPAIIVCTGRHSMRTLLGKNCEGITKIRGRWFD-----------VDGRVVMPMFHPSYLLRNPQKTPGSPKALTW---DDIREVKRKVDELSLIE 245
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BLAST of mRNA_P-littoralis_Contig177.77.1 vs. uniprot
Match: A0A7C3CIK3_9CHLR (Type-4 uracil-DNA glycosylase n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A7C3CIK3_9CHLR)

HSP 1 Score: 186 bits (472), Expect = 9.180e-52
Identity = 103/200 (51.50%), Postives = 126/200 (63.00%), Query Frame = 2 
Query:  353 HRDFVDKLLRLTGDPLEQEGGRIVVFRGNPEAQLMLIGEAPGAEEDRLGVPFVGRSGQLLDDVLRAVGLDPDVDVYVSNIVRRRPIDNRAPTPEEMEFYLPLLLEEIRLVAPKVIVTLGASSTKALLPFETRGITKVRGQWADPGTVAQIHGGALRDKWIMPWFHPSYLLRNAGERSRQEGGVRWHTRNDLHHVKIALDE 952
            H   +  +  LT DPL   G R+V++RGNP+A L+++GE PGA EDRLG P+VGRSGQLLD +L A G D    VYV+N V RRP DNR PT  E++FYLP LLE IR+V PKVI+  G  S + +L  E RGITKVRG W       Q H     D+WIMP FHP+YLLRN    SR  G  +  T  D+  V+   DE
Sbjct:   15 HAAIIRAMEALTDDPLYPTGNRMVIYRGNPQADLLIVGEGPGANEDRLGKPYVGRSGQLLDKILEAAGFDSQNGVYVTNTVFRRPPDNRDPTQAELDFYLPYLLELIRIVDPKVILLTGRFSMRQILG-EKRGITKVRGTWY------QRH-----DRWIMPMFHPAYLLRNP---SRAVGKPKSLTWQDIQAVRRKYDE 199
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BLAST of mRNA_P-littoralis_Contig177.77.1 vs. uniprot
Match: A0A7S2S1J0_9STRA (Type-4 uracil-DNA glycosylase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S1J0_9STRA)

HSP 1 Score: 186 bits (472), Expect = 1.400e-50
Identity = 92/178 (51.69%), Postives = 123/178 (69.10%), Query Frame = 2 
Query:  374 LLRLTGDPLEQEGGRIVVFRGNPEAQLMLIGEAPGAEEDRLGVPFVGRSGQLLDDVLRAVGLDPDVDVYVSNIVRRRPIDNRAPTPEEMEFYLPLLLEEIRLVAPKVIVTLGASSTKALLPFETRGITKVRGQWADPGTVAQIHGGALRDKWIMPWFHPSYLLRNAGERSRQEGGVRW 907
            L  L+GDPLE+ GGR+V +RGNP A+++++GEAPGA ED LGVP+VGR+G+LLD +L A G D + DVY +N+V+RRP +NR PT  E+ +Y PLLLEE+RLV P ++V  G  S + LL  + +GITKVRGQW     + +IHG        MP FHPSYLLRN   ++     + W
Sbjct:   35 LAGLSGDPLEEFGGRVVHYRGNPGAKVVVVGEAPGATEDELGVPYVGRAGKLLDQILTAAGFDVEEDVYFTNVVKRRPPENRDPTAAELRYYSPLLLEELRLVDPWIVVCTGRFSMRTLLDVK-QGITKVRGQWFPLPGLPEIHG--------MPMFHPSYLLRNPSRKAGSPKSLTW 203
[Close]
BLAST of mRNA_P-littoralis_Contig177.77.1 vs. uniprot
Match: A0A7S2V4W6_9STRA (Type-4 uracil-DNA glycosylase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4W6_9STRA)

HSP 1 Score: 184 bits (467), Expect = 1.460e-50
Identity = 102/194 (52.58%), Postives = 130/194 (67.01%), Query Frame = 2 
Query:  359 DFVDKLLRLTGDPLEQEGGRIVVFRGNPEAQLMLIGEAPGAEEDRLGVPFVGRSGQLLDDVLRAVGLD--PDVDVYVSNIVRRRPIDNRAPTPEEMEFYLPLLLEEIRLVAPKVIVTLGASSTKALLPFETRGITKVRGQWADPGTVAQIHGGALRDKWIMPWFHPSYLLRNAGERSRQEGGVRWHTRNDLHHV 934
            +F      + GDPL+  GG +VVFRGNP  ++M++GEAPG EED+  +PFVG++GQLL+ +L   G D  P  +VY++N+V+RRP +NR PTPEE+ FYLPLL EEIRLV P +IV  G+ S KALL  E RGITKVRG W D            + K  MP FHPSYLLRN   RS+++   RW T NDL +V
Sbjct:   63 EFFQVTQSMEGDPLDG-GGSVVVFRGNPRGRVMVVGEAPGEEEDKQKLPFVGKAGQLLEKMLTEAGFDTGPQGEVYITNLVKRRPPNNRNPTPEEVSFYLPLLQEEIRLVDPDIIVCAGSFSMKALLE-EDRGITKVRGTWYD-----------YKGKKCMPIFHPSYLLRN---RSKEKNQPRWLTWNDLLNV 240
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig177.77.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FN93_ECTSI3.230e-11868.86Type-4 uracil-DNA glycosylase n=1 Tax=Ectocarpus s... [more]
A0A835YMS9_9STRA1.920e-6858.42Type-4 uracil-DNA glycosylase n=1 Tax=Tribonema mi... [more]
A0A3M1EZS2_9CHLR1.500e-6054.50Type-4 uracil-DNA glycosylase n=1 Tax=Caldilineae ... [more]
A0A7C3BN30_9CHLR4.520e-5953.00Type-4 uracil-DNA glycosylase n=2 Tax=Chloroflexi ... [more]
A0A1W9W486_9CHLR2.660e-5448.02Type-4 uracil-DNA glycosylase n=1 Tax=Anaerolineac... [more]
W7TG57_9STRA5.930e-5350.50Type-4 uracil-DNA glycosylase n=2 Tax=Monodopsidac... [more]
C1FF23_MICCC3.840e-5242.86Type-4 uracil-DNA glycosylase n=1 Tax=Micromonas c... [more]
A0A7C3CIK3_9CHLR9.180e-5251.50Type-4 uracil-DNA glycosylase n=1 Tax=Anaerolineae... [more]
A0A7S2S1J0_9STRA1.400e-5051.69Type-4 uracil-DNA glycosylase n=1 Tax=Rhizochromul... [more]
A0A7S2V4W6_9STRA1.460e-5052.58Type-4 uracil-DNA glycosylase n=1 Tax=Fibrocapsa j... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig177contigP-littoralis_Contig177:388884..397492 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FN93
PFAMsUDG
Model size1789
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal peptide
Exons5
Evalue1.7e-123
EggNOG OGs2EIJQ@1|root,2SNYZ@2759|Eukaryota
Ec32 ortholog descriptionUracil-DNA glycosylase-like
Ec32 orthologEc-15_003440.1
DescriptionUreE urease accessory protein, C-terminal domain
Cds size909
COG categoryS
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig177.77.1prot_P-littoralis_Contig177.77.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig177 388957..396685 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789852.0763195-UTR-P-littoralis_Contig177:388883..3889561680789852.0763195-UTR-P-littoralis_Contig177:388883..388956Pylaiella littoralis U1_48UTRP-littoralis_Contig177 388884..388956 +
1680789852.143431-UTR-P-littoralis_Contig177:396685..3974921680789852.143431-UTR-P-littoralis_Contig177:396685..397492Pylaiella littoralis U1_48UTRP-littoralis_Contig177 396686..397492 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789852.0870297-CDS-P-littoralis_Contig177:388956..3891801680789852.0870297-CDS-P-littoralis_Contig177:388956..389180Pylaiella littoralis U1_48CDSP-littoralis_Contig177 388957..389180 +
1680789852.0982857-CDS-P-littoralis_Contig177:392320..3924291680789852.0982857-CDS-P-littoralis_Contig177:392320..392429Pylaiella littoralis U1_48CDSP-littoralis_Contig177 392321..392429 +
1680789852.1134193-CDS-P-littoralis_Contig177:394553..3947321680789852.1134193-CDS-P-littoralis_Contig177:394553..394732Pylaiella littoralis U1_48CDSP-littoralis_Contig177 394554..394732 +
1680789852.1241918-CDS-P-littoralis_Contig177:395828..3959501680789852.1241918-CDS-P-littoralis_Contig177:395828..395950Pylaiella littoralis U1_48CDSP-littoralis_Contig177 395829..395950 +
1680789852.1342912-CDS-P-littoralis_Contig177:396410..3966851680789852.1342912-CDS-P-littoralis_Contig177:396410..396685Pylaiella littoralis U1_48CDSP-littoralis_Contig177 396411..396685 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig177.77.1

>prot_P-littoralis_Contig177.77.1 ID=prot_P-littoralis_Contig177.77.1|Name=mRNA_P-littoralis_Contig177.77.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=303bp
MALPQRPRSLMLDYVGALATIAVLALSSRLCLAWQAPTSPHSSRPCFVGV
SSPRRCGSAVPFMGRSRFGATRQSRTRVAVGDVVVPVRDDTKDHRDFVDK
LLRLTGDPLEQEGGRIVVFRGNPEAQLMLIGEAPGAEEDRLGVPFVGRSG
QLLDDVLRAVGLDPDVDVYVSNIVRRRPIDNRAPTPEEMEFYLPLLLEEI
RLVAPKVIVTLGASSTKALLPFETRGITKVRGQWADPGTVAQIHGGALRD
KWIMPWFHPSYLLRNAGERSRQEGGVRWHTRNDLHHVKIALDEWRMVERP
PP*
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mRNA from alignment at P-littoralis_Contig177:388884..397492+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig177.77.1 ID=mRNA_P-littoralis_Contig177.77.1|Name=mRNA_P-littoralis_Contig177.77.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=8609bp|location=Sequence derived from alignment at P-littoralis_Contig177:388884..397492+ (Pylaiella littoralis U1_48)
CTTGAATGTGTTGCTGTGCGCCCCCTATGGCCCCAGGGTGAGACATTTTG
CGGAGTTGGCATCCAACGATATCATGGCCTTGCCACAACGACCCCGATCG
TTGATGCTTGATTATGTGGGTGCTCTCGCTACCATTGCAGTTCTCGCTCT
CTCCTCGCGCCTCTGCCTAGCTTGGCAAGCTCCAACTTCTCCGCACAGCA
GCAGACCATGTTTCGTTGGTGTATCCTCACCACGGCGGTGTGGATCCGCC
GTCCCTTTTATGGGCCGCAGCAGGTTTGGTGCGACACGTCAAAGCAGGTG
AGGTGCTGAGGCTGTCGTTGTAAGACGCCCAGGGCTGCTGCGGATGCAAA
ACCCTGCTGGACGTGTATCGTGGTTCATACTTGTGATATTGCCCCGCCTT
TTGCGTCGCGAATCTCCGTAGATTCATGCATTTCTCTTGCGCCCTCTTTC
TTCTCTGTATATCTAAGTGTATTATTTTTAGCGATCTAGTGTACATATAT
ACAGTACATTTCCTGAATTGTACGCCAACCGGGGTTCCTGCAGCCTGTGG
AGAAATTGTGTTTTCGTTTCGAATTGTGGAATTCCCTGCTGGTTCATGGG
TCGTGTCTCGTGTTTCGTTGTTCATCCTTGTTGTGGTATTGCCCCGCCTT
TTCCGTCGAATCTCCTTAGATTCGTGTATGTCTCTTGCGCCCTTCTACTC
TGTGTTCTGCTATGATATGATATCATATGTACGTATATGTACATGTACGC
TTTAGCAATCTGCATTCATAGCTTTTCCAGACATGCTGTGAATTGGACGC
CGTCAGGGGTTCCCTCAGCTGTGTAGAAATCGCGTCTTCGTTTTGAATCG
TGGACATGTGGATGAGCACGAAGTGTATCGTGTGTCGCACATGACTGCCA
AGTTGTCTCGTTGAGCCTGATAATCTAGGTGGAGCTGCGACTTTTTTGTT
GTTGTTGTGTTTGTTCCTGGATGACCTCATTGCCGACATCTAGCCCGTGG
TCACGAAAGTGCTGAGGGAGGGTGGATCTTGTCGCAAAAATATCTGGATC
GAATATCGACAAGGAGGACGAACAACCAGCAAGCCAAAAGATGATCGTGA
AACGCATGCTGTGACAATTCCAAGACCGGCACGAGAGCTACCGTGCCTCA
AAAGCAGTGCGCGATGGTGCCCCGCATCGGCCTGACCTGGCGCGTTCGTA
ACCCTTGGTTTGGGATTGATGACCGAAAAACTCGGCAAGAGATGTGTGAT
TGCGTGTTGCACACCCTACCGAACATGCCCCCCTAGAGGTCACAAAGCCC
AAAAAGTCAGCCGTTCAAGCAACAACTTTTCACCCTAGGATGAGTGCTCC
TCGCTCAGTTTTTAGCACACCCCTCTCGAAGAAAGCTCTCTGTGCTCTAA
AGGATATGAGCTTTGTGTGTAGGCAACGCCTGTATACGGAAGGTCCCGAC
AAAACGCATACACTGTATACCCAAAATGCACAGCAGCAGCGTCGCTGTTC
TTTCAGTTCCGTGGCCATCCGTTCGGCGTTATATTATTTTCGCACACTCT
ATACTTTTGAGTGCTGTTCTCCTGATTGCCATCAAAACCCGCTCGAACAA
AGGACTCTGTACCCTCCGGGGTTTCAGGTTGTGCTGTGACCAACGATGCA
CAGACATACCGATGCCCACCGATGTGCTCCAGCGGAATACACAGAGACGC
ACAACGAACAACAAACACCTCTCTTTCGCTCCTTGTGGTCTAATCGTTTT
TGAGCCGCGTTTTCGATCTATCCCTTCCTCGGATTCGATTTCGAGGTTCC
CAAAAAGGATCGGAATACAAAAGTTGAAATCGAAAATGTGGCGCTGGCAG
ATCAAATTATGGCCAGCCAGTCATTGAATTTTTTTTTTCGATTTTCGATT
TTAAAGCGGTGACAAGACCCACCCTGAACCCTAAACAAGAATATCCACAA
AAGGTACAGGAAGTAAAAGGGAGGATAAACAAAAGACAAAATACCAAAGA
TGGGTACGCACTCTCATACTACTGTAGTGGTGGTGTGCAATAACGCTACT
TACCTCAGGTATCCATTGGATACAACATCGTGATCTGTCTCCGCCCGCCC
CACTATTAAGGAAGAGAGTTGGCAGACGATGTTCTTGATGATGATGATGA
TGACGTCCGGAGTGCTGTCAGAATGACGAGACCCGCAGGGAGTGATGTGA
AATTAATTCATCGACAATCGCCAAGTCTCTCCGAGTCGATTGAATCGGAC
CCAGGATGAGCACGCCGTTGATATTGCGAAGGAGTCGTTCCACAACAAAG
GGCACAACACAACGCAGTTTATGATAGGAAGGCCACATAATTAAGGTAAT
ACATGTCCTGCGTCTCTCTTCTCTGTCTTAAAAACCAAGGGATGGAGGCC
AAGAGTCAGCTCCCTCGGAAGATTCAAAAAAAAAATTCTGAAGGTCGTGA
TGGATGTCGAGGACGGTCGCGATGCTGTCACTGTGCTGATGATGTTGCCT
ATAGTGACCTCCAGTCATTCTGAATCCACTTCGCTGCCGACGTTGCCCTT
GGCCATCCCCAGCAGCTCCACTCCCGTTCACATGTTCTCGTTGTTCTCCC
TTTCAGTCGGTCCCCTTGAGCTCCCTTCGTCACTTGAGGTTCGAATCTTG
CTCAGAAAAAATGACCCTCAGGGTCAGGACGACCCGTTCCTTGCGGCTAA
TTTCCCTCCGGCTTTGCTTGCGAATCTATCTACTGCTGTATCATCTGATG
AGTTGTAGAAACATGGGTAGAGGTTTTACACTGTGTTGGTTGGCAATCTG
CTCTAGATCCTCATCGAGAGTGAGAGACGAACATATTGATATCTTTGCGG
AGGTATTAAAAAAGATAAAGACATACGCGTAGCAATATATCACTATCACT
GCAGCATAGAATCGCTCACTGGTATGTTGGCAACGGCTGAATCTCCCACG
ATAGCTTGGACAGTGTGGCACTTACACTTACTGAGGTCAACCACACCATA
ATTTATCATTTATAGTTTTCCTGAGATATGGAAACGCCTCCGTTTGTCAC
CTACTTACTCCAAGAGTCAATCATTTCTCATTCTATGCTTGTTGTACCAG
ATTTTGCTGTTCATCGTTCATCCACCGCCGTGGAAAGCCTCGTGATAGTC
CGCATTCCATCTAGGTGTGTTCACAAAAGTGAGCAGCTGGATCCCAGCCT
TCTTTCACGATGATCTCAAGCTGCAGCGGCTGATCGCAATCCGCAGCAGC
TCAAGCTGTCAGTCCAGGGGCTAGCGGCCAAAGCAGACCTCTGGAAGCGG
ACCATCTACAAGGGTTTGGGGAGATTGTCTGCGAAATCTCGATCCCCCGG
CAATCGCATAGAGGCAATCAAATTTTACAGTACCATATGCTTTGATCCAC
GTGCCTCGATCGAACCGTTTTTCGTTTGGTGCAAAAGGACCCGGGTGGCA
GTTGGCGACGTCGTTGTTCCGGTGAGAGATGACACGAAAGACCACCGCGA
CTTCGTCGACAAGTTGCTGAGACTAACCGGGGATCCTCTCGAGCAGGTAC
GACGTTGCGTCGATGAGTCGGATGCGAAATGTAGTGCCAGCGAGAGCTTG
GTGTGACCTTTCTTCCACTGCCTTCGGACGAGCATTAATAACTAGTTCTA
CGAACACACCACCAATTTCGCGATTTTGTGCTACAGGTATGTTTAATGGG
TGAGTGAGTGCAGCATTCGCCGGGCGTGTTAGTTTCTTGTGCTCCATGTT
TTTTTCGTGAAGAAGTTTATTCGCTGAATGAGCGGTCAAATAGAGAAGGG
AGTCTTAATCTCGCCAAGTGCCGCCTCTGTTGATGTTAAATGAATGAGTG
CAACGAGCGAGTTCGCAGGCGGGGTTGAAGGTGCATCACCAGAAGCGAGG
AACGAAGAGCTCCTTTCCAGTACGTTAGACTGAAGGCCTTCGATAGAGAT
TATTCCTGGAGAGACGCTGCCAAGCCTTACACTGCTGTATGCCGTGTTTC
TTTGGCGGAGGAAAACGACACAATTTGGTGCACCCTGGTCATTTTGCGAC
ACAGTAAGGTGCACACGTTTTTCTAGCGTGAAACGAGCTGAGCTGATTGG
TTGACGCTGGTTATTACCCTGCTGAACCGGAAAATGGGCTGGGTGCACCC
TTCGGGGGCTGCCTGTCTGCAGAACTGCGCCCTGATTTTGGATTTGTCCC
CTGTTTTGTCGGAAAATGAGACCTTCCACCGGCCATTCCTCGCACAGGAA
CCACTTTCCGCCCCCACCAAAGGAATCAATAATGCAGATCTTCCTGCGCG
AAACATACAGTGGGAACAGGCAGGACGTACCTGCCTCCAACCCTTCCGTA
TTGTCCTTGTTTGCTGTAGACAGCCATCACTGAAAATTCGAGGACCAAAC
ACCACACACAGGAGACCCGAGAGGGATATCGAGCGGGGCGAGAGCTGCAG
CGGCGGGCTTGTTCGTGAATGTTCGCCAGTCGCGAGAGACTGAGATAATT
GCGGCAGACCGAGATTGATATCACTATCTGGTTGCGCCTTTCATGCCGCC
TTTCTTTGTGTCCCTCTATTCAAACATCGTTTTGTCTCTCTGCCTGCCAA
CGTCAACCGGCTCTGCGCATCCGGTTTTCTATTCTGTATGTCTGTCTGTT
GTTGCATTTGGTGCGCTCTACAGCCAGCTGTTATGCTTAACAGCAGCAGT
AGTCTCTACAGCAGCAGTACTGTACCAACAACGTGTTTTTCGTGAGGTCT
TTACAAAACGTAGGTGTTCCTGTTGGTTGATTTTCAGTCTGCCTGCCAAC
GTCTCTTTGCCGTCTTTTGGGTAAACCAGACATTGTACGTTTCGAGCTGA
AAAGTCGATGTGGAAGGGTGGGGTTAGGCCCGTTCTGCCGTTGTGTGACC
ATCGTATGTTTCGCGCGGGAAGATCTGCGTTTTGGATTCCTTTGGCGGGA
GCGGAAAGTGGTTCCTGCGGGGGGAATGGCCGGTGGAAGGTCCCGCTTCC
CCACAAAACAGGGTACATGTCTAAAGTCGGGGTGCGGTCCAGCAGAAAAG
TAGCCCCCGCGGGGTGCATCCAGCCCAGTTGCCGACTCAGCAGGGTTAAA
ACGAGCGTTGGCCAGTTCGCTCAGTTCGTTTGACGGTGGAAAAAAATGTG
CATCGTGCCATGTCTCGAAATGATCAGGGTGCACCCATTTGTGTCGTTTC
CCTTTTTATTTGGCTTATCCACGGGATGAATCAGTCAGCGATTTATCTTA
TCGTAGGTTAGTTATTGTTTGGAAGTGGTACATTTCGTGAACGTATCGGT
ACTCGTTGCATATTTAACGCTTGGTTCCAGACTCGAGCTTCAACTTCGCA
CAATCCCCATAAACAATCCTATTCTTTGATCATGCCCCAAATATCTAACG
GTATCTCGGTATCTTGCGACCTCATTCTGCACATCGCCTTTATTCTGGAC
CAGAGGAAGAATATATGTTCAATCTCTCCGGTGCTTTGTAGACATTTCGA
AGTAGTTGCCACCGCTGAATTGTTCAACTTTTCTACGAAACCAGTTTGAG
CGCAACCGTTGTCGGTCTCTCACGAAAACGGCGCCACGGTCATTTTCTCT
GCGTGAAGACGAAGGAAAAACACGACTTTGTTCATTCTGCGTGCTTCCAA
AACGGTAAACAAATAAACAGGAAGGCGGGAGAATCGTCGTCTTCCGCGGC
AACCCTGAGGCGCAACTGATGCTGATCGGGGAGGCGCCCGGCGCTGAGGA
GGATAGGCTGGGGGTGCCGTTCGTGGGTCGCTCGGGGCAGCTTTTGGACG
ACGTCCTTAGGGCGGTCGGTCTCGACCCCGACGTTGACGTTTACGTTAGG
TAAGAGTCAGGCCCTGTGACAGCCGTAAGGCCGTCCGCGCTTGTTGGCGA
CCCAACTCAGATGGAATTCGTTTGGAGTGGTCATTACTTCGAGGCGCTGC
AAAGTGGTGTTGGTGATATCTCGTCTGTGGGCGCTAGGATCGCACGTAAG
ACTATCGACTCCGTGTGATCAGTCGAAGTGGCGTTTCGATCGGCCATCGA
TCTCAGTCCACGATCCAATAGACTATGTCGTGCCGTGGTGGGGGGCAGCC
TCCAACGTGTTCGGCCTCGATTGAAATAAATAACATATTTTGAGCTTACT
GCGCCCCACGATATCTCGGCTCGGCAATACTCTATCGACAACTACTGAAG
TCTCCCTGCCGAAAGGGTACCTTTAGCTACTCGGACTGGGCCTCACAGAT
CACAGATAATCCAGCCAGCTAGTCGGGCGACTGGCACATCCCAGTAGCGG
GTTGTATCAGTGGCGCTTCCTTTCGTGAGTAGAACACTAGTGTTATCAGT
ATTGGTCCAGGTCACGCCCTCATCAAGCCCTATTTTGTGTTCATCGCAAT
CTGCTCCAAGCGGGCTACCATCATGCGTCCCGCCCAAAACTGTCACCTGC
ACTTCACAAACAAGCGTGTCTCTCTCTTACTTCGCTGTGCTTGAAAACGA
TACTCGTTTTTCCAACACGGATAAGATAAGCGGGAGCAATCACGAGTGTG
ATGGCCAAGAGTGTGCGCCATGTCTAATACCAATCGATGTCGTGTGTCTT
TATGAGTGTCTCTGTGTTGCCATCCTAATTGCATGCCCGGTATTCTGGAC
GCCGGTCTACACCCAAGGCGTAGTACACGGTCGCATCAGCCGGGGTCACA
CAGGAGGCCTGTTTTCTTCCTTCTCTCGGCGCGTGCTGTTTGTAACTGCA
ATGAAAAATGAAAGTATACAAGTCACCTCTCATCCATCATGCACCATTTT
GCGGCAACAACCGATCAATCACAGCCTCTCGCAACCGCTCGTGACCTTCC
CTGACTCTACCCCCTGCAAAAGTGTACCGTACCGAGGTCCATATTTCTCG
TGTGACGTCGCTTTGCGTCCCTTCCTCCTTTACTTTGAACCCAAGCAACA
TCGTGCGACGGAGGCCGATCGATAACCGGGCGCCGACCCCGGAGGAGATG
GAGTTCTACCTGCCGCTACTCCTTGAAGAGATTCGACTGGTCGCTCCCAA
AGTCATCGTAACGCTCGGTAATTATTCGTTGCTTTTCGTTGTGTTGTTGA
TTCTTAAAGTAGCGCACAATTTTGAGTAACGAGGCTGCCATTGGTGTTGA
TATTCCGTTTGTCTTGCTTCTAGTGTTGATCTGACCCGCAGAGATCGATC
CAATCAGAGCACCGAACAGAGTTGAAGACTCCACAAACCCATAACGCACG
TTTGATAGCTTCGACGAGTATCTCCAACCCTGATCTGCTTTGTTTCGCCA
TGGAGTCTCAATGGCCGCAGTGCAACCGCGCTCCTATCCTTCGTGCATGA
TAGTCGGGAATCTGGGCCCCTGATCAGATCTTCCCAGGGACACGCTCTCA
ATAGTTATTAATGGCCTGGGGCTTCTGACCGGGCATTTTTCACAAGAGCA
ACGATAAACGGTGAACGCAACAATAAACCGGTATCAGCAATACCATTTGT
TGTTTACTCCCCCTTGGCGAGGTCCAGGTGCTAGCTCGACGAAGGCACTC
CTGCCCTTCGAAACCCGAGGCATCACCAAAGTGCGAGGGCAGTGGGCCGA
CCCTGGCACTGTGGCCCAGATCCACGGTGGTGCGCTAAGGGATAAGTGGA
TCATGCCGTGGTTTCACCCCAGCTACTTGCTTCGGAACGCAGGCGAGCGC
AGTCGACAGGAAGGGGGAGTACGGTGGCACACGAGGAACGACCTGCACCA
CGTCAAGATAGCGCTTGACGAATGGCGAATGGTCGAAAGACCGCCCCCGT
GACGTGTAAGGTCAAGCCCGCGCGCGCTCGATACCCTCACAAGGGTCCAT
TCCCGTTGAGAAGCAGTTACACGCTGTTTTTTGTTCGTTGTGTACGATTC
TAACGGATCGATTTTATGGAGTACTTGTATTTCGTGTATATCTTAGGATC
TCGGCAGATAGACGGTTGTTGTTAGTTTTGAGGACGTGAAACTGGAGAAG
GTGTGCCGACGTTCGCGATACACGGATCAGTGCGGAATTCAGCTGCAAGG
GGCAAACAAGGATTATGGTCAATACGGCAGTGACTGGTTCAGAATGCAAG
AACGACTTGACCACGTGGGAAGAAGTACGAACTACTGTGTTGTACCAAGT
ACCAGGTGTATATCATATGTATCAGTTGATTTTACGATTGTGGTCAAGTC
GTAAGTGTGGGTCGTCATGGCTTGGTTGCCGCTCACGGAGAGGTCACGCC
AGTTTTGAACGTGAAGGCATCGAAACCAACCGGGCCTTGAGGGAGGCATT
CCACAGAGAGAGGTGAAGGGCTGCTGGTACTACGACTGTTGCTGCTGCTG
CTTTAGTCAGGGTTGCACCGGTCTGGAGAAAAAGGCGTGTGGGTCCGGGG
CCGTTTGACCTGTATCCCCGGGTTACTACTGGAGAATACTTCGAAGTATC
ATACGTGTTTCTTGCAGAGCGAGGGTCAGCTTGGCTCACCCGCATGTGAT
CAGAAGAGGTTTTGACGTCCTGAGAGCTGCTGCTGTACCAGAGAGGAGAC
TGCTGTAAGTGTGGCTGATGAGGAAGGTGTGGCGATAATAACGAAATATT
GGTGTGTAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig177:388884..397492+

>mRNA_P-littoralis_Contig177.77.1 ID=mRNA_P-littoralis_Contig177.77.1|Name=mRNA_P-littoralis_Contig177.77.1|organism=Pylaiella littoralis U1_48|type=CDS|length=909bp|location=Sequence derived from alignment at P-littoralis_Contig177:388884..397492+ (Pylaiella littoralis U1_48)
ATGGCCTTGCCACAACGACCCCGATCGTTGATGCTTGATTATGTGGGTGC
TCTCGCTACCATTGCAGTTCTCGCTCTCTCCTCGCGCCTCTGCCTAGCTT
GGCAAGCTCCAACTTCTCCGCACAGCAGCAGACCATGTTTCGTTGGTGTA
TCCTCACCACGGCGGTGTGGATCCGCCGTCCCTTTTATGGGCCGCAGCAG
GTTTGGTGCGACACGTCAAAGCAGGACCCGGGTGGCAGTTGGCGACGTCG
TTGTTCCGGTGAGAGATGACACGAAAGACCACCGCGACTTCGTCGACAAG
TTGCTGAGACTAACCGGGGATCCTCTCGAGCAGGAAGGCGGGAGAATCGT
CGTCTTCCGCGGCAACCCTGAGGCGCAACTGATGCTGATCGGGGAGGCGC
CCGGCGCTGAGGAGGATAGGCTGGGGGTGCCGTTCGTGGGTCGCTCGGGG
CAGCTTTTGGACGACGTCCTTAGGGCGGTCGGTCTCGACCCCGACGTTGA
CGTTTACGTTAGCAACATCGTGCGACGGAGGCCGATCGATAACCGGGCGC
CGACCCCGGAGGAGATGGAGTTCTACCTGCCGCTACTCCTTGAAGAGATT
CGACTGGTCGCTCCCAAAGTCATCGTAACGCTCGGTGCTAGCTCGACGAA
GGCACTCCTGCCCTTCGAAACCCGAGGCATCACCAAAGTGCGAGGGCAGT
GGGCCGACCCTGGCACTGTGGCCCAGATCCACGGTGGTGCGCTAAGGGAT
AAGTGGATCATGCCGTGGTTTCACCCCAGCTACTTGCTTCGGAACGCAGG
CGAGCGCAGTCGACAGGAAGGGGGAGTACGGTGGCACACGAGGAACGACC
TGCACCACGTCAAGATAGCGCTTGACGAATGGCGAATGGTCGAAAGACCG
CCCCCGTGA
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