mRNA_P-littoralis_Contig177.48.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig177.48.1
Unique NamemRNA_P-littoralis_Contig177.48.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig177.48.1 vs. uniprot
Match: A0A6H5JU73_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU73_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 1.280e-18
Identity = 44/70 (62.86%), Postives = 54/70 (77.14%), Query Frame = 1 
Query:    1 NWLRGEGGYFLKGPDGVPKRLPPGMRLAEVPDFSLLLLSRLIELREHPWKYFPELLYFAMQKLDDEEFEA 210
            NW+RGEGGY L+G  GV +RLP GMRLA++ DFSLLL+ RL ELR HP KYFP+LL +A + L +EE  A
Sbjct:  390 NWIRGEGGYLLEGRGGVAERLPAGMRLADIADFSLLLVERLEELRMHPKKYFPDLLAWAEKTLSEEEVSA 459
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BLAST of mRNA_P-littoralis_Contig177.48.1 vs. uniprot
Match: D7FIQ1_ECTSI (Uncharacterized protein n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIQ1_ECTSI)

HSP 1 Score: 75.1 bits (183), Expect = 6.960e-13
Identity = 40/82 (48.78%), Postives = 53/82 (64.63%), Query Frame = 1 
Query:    1 NWLRGEGGYFLKGPDGVPKRLPPGMRLAEVPDFSLLLLSRLIELREHPWKYFPELLYFAMQKLDDEEFEAFLQNFEEGGGFF 246
            NW+RG+GG+FLKG +GV ++L PGMRL EV DFS LLL +L  +R+ P  YF  +L      L +   + F+ NF E  GFF
Sbjct:  143 NWIRGKGGFFLKG-EGVGRQLFPGMRLVEVADFSRLLLVKLETIRKDPKTYFAAVLERVQTTLSEAMAKLFMTNFSEDKGFF 223
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BLAST of mRNA_P-littoralis_Contig177.48.1 vs. uniprot
Match: A0A6H5JSZ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSZ3_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 8.040e-12
Identity = 30/43 (69.77%), Postives = 33/43 (76.74%), Query Frame = 3 
Query:  252 MEQRWIKWTDRHQHLPLSMARLGCSSFYEGKWAGSEKAFDQQI 380
            M  RW  W D HQHLP SMARL CSSF+EGKWAGSEKAF+  +
Sbjct:    1 MIARWTIWMDMHQHLPYSMARLACSSFFEGKWAGSEKAFEHAV 43
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BLAST of mRNA_P-littoralis_Contig177.48.1 vs. uniprot
Match: A0A6H5L8G1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8G1_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 3.320e-11
Identity = 39/82 (47.56%), Postives = 51/82 (62.20%), Query Frame = 1 
Query:    1 NWLRGEGGYFLKGPDGVPKRLPPGMRLAEVPDFSLLLLSRLIELREHPWKYFPELLYFAMQKLDDEEFEAFLQNFEEGGGFF 246
            NW+RG+GG+FLKG +GV +RL PGMRL EV D S LLL +L  +R+ P  YF  +L      L +   + F+ NF E   FF
Sbjct:  103 NWIRGKGGFFLKG-EGVGRRLFPGMRLVEVADCSRLLLLKLETIRKDPKTYFAAVLERVRTTLSEPMEKLFMTNFSEDKVFF 183
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BLAST of mRNA_P-littoralis_Contig177.48.1 vs. uniprot
Match: A0A6H5JN38_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN38_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 6.840e-11
Identity = 31/41 (75.61%), Postives = 35/41 (85.37%), Query Frame = 1 
Query:    1 NWLRGEGGYFLKGPDGVPKRLPPGMRLAEVPDFSLLLLSRL 123
            NW+RGEGGYFL+G  GV +RLPPGMRLAE  DFSLLL+ RL
Sbjct:  117 NWIRGEGGYFLEGTGGVAERLPPGMRLAEAADFSLLLVKRL 157
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BLAST of mRNA_P-littoralis_Contig177.48.1 vs. uniprot
Match: A0A6H5KP72_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP72_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 5.140e-9
Identity = 32/56 (57.14%), Postives = 41/56 (73.21%), Query Frame = 1 
Query:    1 NWLRGEGGYFLKGPDGVPKRLPPGMRLAEVPDFSLLLLSRLIELREHPWKYFPELL 168
            NW+RG+GG+FLKG +GV +RL PGMRL EV D S LLL +L  +R+ P  YF  +L
Sbjct:  103 NWIRGKGGFFLKG-EGVGRRLFPGMRLVEVADCSRLLLLKLETIRKDPKTYFAAVL 157
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BLAST of mRNA_P-littoralis_Contig177.48.1 vs. uniprot
Match: A0A6H5JQF6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQF6_9PHAE)

HSP 1 Score: 54.7 bits (130), Expect = 7.620e-6
Identity = 27/59 (45.76%), Postives = 35/59 (59.32%), Query Frame = 3 
Query:  204 RGIFAKFRRRWRLFWEMEQRWIKWTDRHQHLPLSMARLGCSSFYEGKWAGSEKAFDQQI 380
            +G FA F++RW          IKW +RHQ LPLSMAR+GC SFY      +E A +Q +
Sbjct:  134 KGFFALFKKRW----------IKWMERHQQLPLSMARIGCPSFYARTGIMAEGAVEQAV 182
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BLAST of mRNA_P-littoralis_Contig177.48.1 vs. uniprot
Match: A0A6H5KH75_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH75_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 1.590e-5
Identity = 22/31 (70.97%), Postives = 26/31 (83.87%), Query Frame = 3 
Query:  243 FWEMEQRWIKWTDRHQHLPLSMARLGCSSFY 335
            F E+++RWIKW  RHQ LPLSMAR+GC SFY
Sbjct:  354 FAEVKKRWIKWMQRHQELPLSMARIGCPSFY 384
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BLAST of mRNA_P-littoralis_Contig177.48.1 vs. uniprot
Match: A0A6H5JMW8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMW8_9PHAE)

HSP 1 Score: 53.5 bits (127), Expect = 2.010e-5
Identity = 22/31 (70.97%), Postives = 25/31 (80.65%), Query Frame = 3 
Query:  243 FWEMEQRWIKWTDRHQHLPLSMARLGCSSFY 335
            F E ++RWIKW  RHQ LPLSMAR+GC SFY
Sbjct:  149 FAEFKKRWIKWMQRHQELPLSMARIGCPSFY 179
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BLAST of mRNA_P-littoralis_Contig177.48.1 vs. uniprot
Match: A0A6H5KEV4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEV4_9PHAE)

HSP 1 Score: 52.4 bits (124), Expect = 2.390e-5
Identity = 24/34 (70.59%), Postives = 29/34 (85.29%), Query Frame = 1 
Query:    1 NWLRGEGGYFLKGPDGVPKRLPPGMRLAEVPDFS 102
            NW+RG+GG+FLKG +GV +RL PGMRL EV DFS
Sbjct:  163 NWIRGKGGFFLKG-EGVGRRLFPGMRLVEVADFS 195
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig177.48.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A6H5JU73_9PHAE1.280e-1862.86Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
D7FIQ1_ECTSI6.960e-1348.78Uncharacterized protein n=3 Tax=Ectocarpus silicul... [more]
A0A6H5JSZ3_9PHAE8.040e-1269.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L8G1_9PHAE3.320e-1147.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN38_9PHAE6.840e-1175.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KP72_9PHAE5.140e-957.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQF6_9PHAE7.620e-645.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KH75_9PHAE1.590e-570.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JMW8_9PHAE2.010e-570.97Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KEV4_9PHAE2.390e-570.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig177contigP-littoralis_Contig177:256376..257174 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size464
Hectar predicted targeting categoryother localisation
Exons2
Cds size462
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789850.5937953-CDS-P-littoralis_Contig177:256375..2565761680789850.5937953-CDS-P-littoralis_Contig177:256375..256576Pylaiella littoralis U1_48CDSP-littoralis_Contig177 256376..256576 +
1680789850.6063087-CDS-P-littoralis_Contig177:256913..2571741680789850.6063087-CDS-P-littoralis_Contig177:256913..257174Pylaiella littoralis U1_48CDSP-littoralis_Contig177 256914..257174 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig177.48.1prot_P-littoralis_Contig177.48.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig177 256376..257174 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig177.48.1

>prot_P-littoralis_Contig177.48.1 ID=prot_P-littoralis_Contig177.48.1|Name=mRNA_P-littoralis_Contig177.48.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=154bp
NWLRGEGGYFLKGPDGVPKRLPPGMRLAEVPDFSLLLLSRLIELREHPWK
YFPELLYFAMQKLDDEEFEAFLQNFEEGGGFFGRWSSGGSNGRTGTSTFP
SAWRAWGVVLFTKESGLGRRRLLTSRFMDCSSLFLWLACILASRTCCLRV
RAR*
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mRNA from alignment at P-littoralis_Contig177:256376..257174+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig177.48.1 ID=mRNA_P-littoralis_Contig177.48.1|Name=mRNA_P-littoralis_Contig177.48.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=799bp|location=Sequence derived from alignment at P-littoralis_Contig177:256376..257174+ (Pylaiella littoralis U1_48)
AACTGGCTGCGTGGCGAGGGTGGATACTTCTTGAAGGGCCCTGATGGAGT
ACCGAAGCGGCTGCCACCTGGGATGCGATTGGCCGAAGTACCTGACTTCT
CCCTCTTGTTACTCTCCCGCCTGATCGAGCTTCGCGAGCACCCATGGAAG
TATTTTCCTGAGCTGCTCTATTTTGCGATGCAGAAGCTGGACGACGAAGA
GGTGAAAAAATGATTTCCCAGCAGCAGCTGTTTTTTATCTGAACAAATGA
ATGAAAAAATGTTTTTACAGCAGTCTGAATTTGACTGAAACAGAGAGGGA
AAAATGATTTTTTTCCAAATCAAGAAAGAGAAGGCTGAGCAAAACTTTTT
GCGGAACATCTTCTGCTGCTGTTTGCCTGCTCTGTTTCTCTGCTATCTCT
GTCGTCTCCTGCTCGCGAGCGCCGGCTCGCATGCGTTGTGACTGGACTTT
CACTACCACCGTTCGCAACCCTCACGAGTTTCCTGTATTTCGCCTACCCC
TGCGTTCTCTATTCTCCTGACGCGTGCTGCTCGACCAGTTCGAGGCATTT
TTGCAAAATTTCGAAGAAGGTGGCGGCTTTTTTGGGAGATGGAGCAGCGG
TGGATCAAATGGACGGACAGGCACCAGCACCTTCCCCTCAGCATGGCGCG
CCTGGGGTGTAGTTCTTTTTACGAAGGAAAGTGGGCTGGGTCGGAGAAGG
CTTTTGACCAGCAGATTCATGGACTGCAGCTCCCTTTTCCTTTGGCTGGC
CTGCATCCTCGCTTCAAGAACTTGCTGCTTAAGAGTGAGGGCTCGTTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig177:256376..257174+

>mRNA_P-littoralis_Contig177.48.1 ID=mRNA_P-littoralis_Contig177.48.1|Name=mRNA_P-littoralis_Contig177.48.1|organism=Pylaiella littoralis U1_48|type=CDS|length=462bp|location=Sequence derived from alignment at P-littoralis_Contig177:256376..257174+ (Pylaiella littoralis U1_48)
AACTGGCTGCGTGGCGAGGGTGGATACTTCTTGAAGGGCCCTGATGGAGT
ACCGAAGCGGCTGCCACCTGGGATGCGATTGGCCGAAGTACCTGACTTCT
CCCTCTTGTTACTCTCCCGCCTGATCGAGCTTCGCGAGCACCCATGGAAG
TATTTTCCTGAGCTGCTCTATTTTGCGATGCAGAAGCTGGACGACGAAGA
GTTCGAGGCATTTTTGCAAAATTTCGAAGAAGGTGGCGGCTTTTTTGGGA
GATGGAGCAGCGGTGGATCAAATGGACGGACAGGCACCAGCACCTTCCCC
TCAGCATGGCGCGCCTGGGGTGTAGTTCTTTTTACGAAGGAAAGTGGGCT
GGGTCGGAGAAGGCTTTTGACCAGCAGATTCATGGACTGCAGCTCCCTTT
TCCTTTGGCTGGCCTGCATCCTCGCTTCAAGAACTTGCTGCTTAAGAGTG
AGGGCTCGTTGA
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