mRNA_P-littoralis_Contig177.38.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig177.38.1
Unique NamemRNA_P-littoralis_Contig177.38.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig177.38.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig177contigP-littoralis_Contig177:175501..176093 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size577
Hectar predicted targeting categoryother localisation
Exons2
Cds size330
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789848.708846-UTR-P-littoralis_Contig177:175500..1756991680789848.708846-UTR-P-littoralis_Contig177:175500..175699Pylaiella littoralis U1_48UTRP-littoralis_Contig177 175501..175699 -
1680789848.7431493-UTR-P-littoralis_Contig177:176045..1760931680789848.7431493-UTR-P-littoralis_Contig177:176045..176093Pylaiella littoralis U1_48UTRP-littoralis_Contig177 176046..176093 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789848.721312-CDS-P-littoralis_Contig177:175699..1759541680789848.721312-CDS-P-littoralis_Contig177:175699..175954Pylaiella littoralis U1_48CDSP-littoralis_Contig177 175700..175954 -
1680789848.7306516-CDS-P-littoralis_Contig177:175970..1760451680789848.7306516-CDS-P-littoralis_Contig177:175970..176045Pylaiella littoralis U1_48CDSP-littoralis_Contig177 175971..176045 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig177.38.1prot_P-littoralis_Contig177.38.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig177 175700..176045 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig177.38.1

>prot_P-littoralis_Contig177.38.1 ID=prot_P-littoralis_Contig177.38.1|Name=mRNA_P-littoralis_Contig177.38.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=110bp
MITSVCQEETPGVSSSRAVAAAAAARLQEASTGADEKRRAFLFVLVLVSV
CRCLSCHFSSSILLAPPTTERGVCLLAGPARPGPAWPGLARRGPAWIGRE
VDDIKLLAH*
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mRNA from alignment at P-littoralis_Contig177:175501..176093-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig177.38.1 ID=mRNA_P-littoralis_Contig177.38.1|Name=mRNA_P-littoralis_Contig177.38.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=593bp|location=Sequence derived from alignment at P-littoralis_Contig177:175501..176093- (Pylaiella littoralis U1_48)
GCCGCTTGCACAATGCCGTAACAACGGTCATCAGAGAGCGAGCGGCATAT
GATCACAAGCGTTTGTCAGGAGGAAACACCCGGGGTCAGCAGCAGCAGAG
CAGTAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGGCTGCAAGA
AGCAAGCACGGGAGCGGACGAAAAAAGGAGGGCTTTCCTCTTTGTCTTGG
TCTTGGTCTCGGTCTGTCGTTGTCTCTCTTGTCATTTCTCATCATCAATC
TTGCTTGCACCCCCCACTACGGAAAGAGGCGTCTGCCTGCTTGCCGGCCC
GGCCCGGCCCGGCCCGGCCTGGCCCGGCCTGGCCAGGCGAGGCCCGGCTT
GGATCGGCCGGGAGGTCGATGATATCAAATTGCTTGCTCATTAGCGCGAA
CAAGACACGGCGAATCGTCGGCCTCAGCCCTAAGTCAGCCAAGGTGGCCG
CCATTTAGAGCAGTCCAGACTTCTCGCGACTCGTTGCCAGGCTACCACAC
GCACAAGCGGTAGCTCCAGCTTCTCCTTCCGGCCCTCGTCGACCACCCCG
GTCATGGACAATTTTTCAAGGGGCCCCACCGCCACCGCCTCCT
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Coding sequence (CDS) from alignment at P-littoralis_Contig177:175501..176093-

>mRNA_P-littoralis_Contig177.38.1 ID=mRNA_P-littoralis_Contig177.38.1|Name=mRNA_P-littoralis_Contig177.38.1|organism=Pylaiella littoralis U1_48|type=CDS|length=330bp|location=Sequence derived from alignment at P-littoralis_Contig177:175501..176093- (Pylaiella littoralis U1_48)
ATGATCACAAGCGTTTGTCAGGAGGAAACACCCGGGGTCAGCAGCAGCAG
AGCAGTAGCAGCAGCAGCAGCAGCACGGCTGCAAGAAGCAAGCACGGGAG
CGGACGAAAAAAGGAGGGCTTTCCTCTTTGTCTTGGTCTTGGTCTCGGTC
TGTCGTTGTCTCTCTTGTCATTTCTCATCATCAATCTTGCTTGCACCCCC
CACTACGGAAAGAGGCGTCTGCCTGCTTGCCGGCCCGGCCCGGCCCGGCC
CGGCCTGGCCCGGCCTGGCCAGGCGAGGCCCGGCTTGGATCGGCCGGGAG
GTCGATGATATCAAATTGCTTGCTCATTAG
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