prot_P-littoralis_Contig176.118.3 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig176.118.3
Unique Nameprot_P-littoralis_Contig176.118.3
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length223
Homology
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BLAST of mRNA_P-littoralis_Contig176.118.3 vs. uniprot
Match: A0A6H5K7I7_9PHAE (F-box domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7I7_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 2.170e-31
Identity = 54/59 (91.53%), Postives = 57/59 (96.61%), Query Frame = 0 
Query:  164 MELILTSFLSPILWVIPQGAVHNVMTNLHPTDLTQVSCVCQDWRQLAQDVPTLAPGVVD 222
            MELILTSFLSPILWVIP+GAV N+MTNLHPTDLTQV+CVCQDWRQLAQDVP LAPGVVD
Sbjct:    1 MELILTSFLSPILWVIPRGAVQNMMTNLHPTDLTQVACVCQDWRQLAQDVPALAPGVVD 59
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig176.118.3 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K7I7_9PHAE2.170e-3191.53F-box domain-containing protein n=1 Tax=Ectocarpus... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001810F-box domainPFAMPF12937F-box-likecoord: 130..163
e-value: 4.6E-6
score: 26.4
IPR001810F-box domainPFAMPF00646F-boxcoord: 184..213
e-value: 0.0067
score: 16.3
IPR001810F-box domainPROSITEPS50181FBOXcoord: 126..175
score: 8.543671
NoneNo IPR availableGENE3D1.20.1280.50coord: 124..177
e-value: 3.4E-5
score: 25.5
NoneNo IPR availableGENE3D1.20.1280.50coord: 178..216
e-value: 2.7E-5
score: 26.0
IPR036047F-box-like domain superfamilySUPERFAMILY81383F-box domaincoord: 175..212
IPR036047F-box-like domain superfamilySUPERFAMILY81383F-box domaincoord: 113..163

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig176contigP-littoralis_Contig176:438849..442490 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig176.118.3mRNA_P-littoralis_Contig176.118.3Pylaiella littoralis U1_48mRNAP-littoralis_Contig176 436937..442685 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig176.118.3 ID=prot_P-littoralis_Contig176.118.3|Name=mRNA_P-littoralis_Contig176.118.3|organism=Pylaiella littoralis U1_48|type=polypeptide|length=223bp
MARQQLSGLPKEVLWRVIQFVDESHRNQCKMISRHFGLNRSSLSGGSVLR
AKGSIPNELLVGLVLQFLDEEPDDGDRLRHIGKVWAAYLQRAAAAAIAAT
GGGDAGTVAYPPLGMGFGPATEPGPLDTTGRLPNELLESMFDYLDEDMTM
NCASVARRWRSSAMELILTSFLSPILWVIPQGAVHNVMTNLHPTDLTQVS
CVCQDWRQLAQDVPTLAPGVVD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001810F-box_dom
IPR036047F-box-like_dom_sf