mRNA_P-littoralis_Contig176.118.3 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig176.118.3
Unique NamemRNA_P-littoralis_Contig176.118.3
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig176.118.3 vs. uniprot
Match: A0A6H5K7I7_9PHAE (F-box domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7I7_9PHAE)

HSP 1 Score: 118 bits (295), Expect = 2.520e-28
Identity = 54/59 (91.53%), Postives = 57/59 (96.61%), Query Frame = 1 
Query:  685 MELILTSFLSPILWVIPQGAVHNVMTNLHPTDLTQVSCVCQDWRQLAQDVPTLAPGVVD 861
            MELILTSFLSPILWVIP+GAV N+MTNLHPTDLTQV+CVCQDWRQLAQDVP LAPGVVD
Sbjct:    1 MELILTSFLSPILWVIPRGAVQNMMTNLHPTDLTQVACVCQDWRQLAQDVPALAPGVVD 59
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig176.118.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K7I7_9PHAE2.520e-2891.53F-box domain-containing protein n=1 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig176contigP-littoralis_Contig176:436937..442685 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2776
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-21_000830.1
Cds size669
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig176.118.3prot_P-littoralis_Contig176.118.3Pylaiella littoralis U1_48polypeptideP-littoralis_Contig176 438849..442490 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789848.565151-UTR-P-littoralis_Contig176:436936..4388481680789848.565151-UTR-P-littoralis_Contig176:436936..438848Pylaiella littoralis U1_48UTRP-littoralis_Contig176 436937..438848 -
1680789848.6224735-UTR-P-littoralis_Contig176:442490..4426851680789848.6224735-UTR-P-littoralis_Contig176:442490..442685Pylaiella littoralis U1_48UTRP-littoralis_Contig176 442491..442685 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789848.5791993-CDS-P-littoralis_Contig176:438848..4389231680789848.5791993-CDS-P-littoralis_Contig176:438848..438923Pylaiella littoralis U1_48CDSP-littoralis_Contig176 438849..438923 -
1680789848.588887-CDS-P-littoralis_Contig176:439495..4396161680789848.588887-CDS-P-littoralis_Contig176:439495..439616Pylaiella littoralis U1_48CDSP-littoralis_Contig176 439496..439616 -
1680789848.6030538-CDS-P-littoralis_Contig176:439914..4401631680789848.6030538-CDS-P-littoralis_Contig176:439914..440163Pylaiella littoralis U1_48CDSP-littoralis_Contig176 439915..440163 -
1680789848.6121926-CDS-P-littoralis_Contig176:442266..4424901680789848.6121926-CDS-P-littoralis_Contig176:442266..442490Pylaiella littoralis U1_48CDSP-littoralis_Contig176 442267..442490 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig176.118.3

>prot_P-littoralis_Contig176.118.3 ID=prot_P-littoralis_Contig176.118.3|Name=mRNA_P-littoralis_Contig176.118.3|organism=Pylaiella littoralis U1_48|type=polypeptide|length=223bp
MARQQLSGLPKEVLWRVIQFVDESHRNQCKMISRHFGLNRSSLSGGSVLR
AKGSIPNELLVGLVLQFLDEEPDDGDRLRHIGKVWAAYLQRAAAAAIAAT
GGGDAGTVAYPPLGMGFGPATEPGPLDTTGRLPNELLESMFDYLDEDMTM
NCASVARRWRSSAMELILTSFLSPILWVIPQGAVHNVMTNLHPTDLTQVS
CVCQDWRQLAQDVPTLAPGVVD*
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mRNA from alignment at P-littoralis_Contig176:436937..442685-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig176.118.3 ID=mRNA_P-littoralis_Contig176.118.3|Name=mRNA_P-littoralis_Contig176.118.3|organism=Pylaiella littoralis U1_48|type=mRNA|length=5749bp|location=Sequence derived from alignment at P-littoralis_Contig176:436937..442685- (Pylaiella littoralis U1_48)
CCGCCCCGCCCCCTGTTTTAATTGAATAACAGGAGGGAGGGAAAACAATA
AAACAATATCTGTCGCCCCCCTGAGACACACACAGAAGGCCTCACACAGC
ATACTACTGCACGCCGCCAACTACATGCAGCACACAGCAGTATCGCAGGT
CAGGACACAGGACACTGAAGGAAAGCGCGAAACACGTTGGGCGACATGGC
GAGGCAGCAGCTGTCAGGTCTCCCCAAAGAGGTCCTCTGGCGCGTGATTC
AGTTTGTGGACGAGTCTCATCGAAACCAGTGCAAGATGATTTCCCGTCAC
TTCGGGTTGAACCGGAGCAGCTTGAGCGGGGGAAGTGTCCTTCGAGCAAA
GGGGAGCATCCCGAACGAACTGCTGGTTGGTCTGGTGCTACAGTTTTTGG
ATGAGGAGCCAGATGATGGGTGAGCCTGCGGGTGTGCTAGAGGGTTTGCG
GGTAATCAGGTGGGTGGGCGGGTGCGTTCGTGGTCAGGGTGGACAATACA
CGCTCGAGGGTGCGGGATATCTTCCAGAGCAGCAGTAACTTCTTCTGGGG
CCCTACTTGTACAATGTTGTTGTTGTTGTTGTTGATTCTCACATTAGCTC
ACTACCGCCGCAGTCTAGCCCGTGGTCACAAACCAGGCACATATCGTGCT
AGGAGGAAAAAAATAAAAAAATAAAATTGTATTGATACTCGAATATTTTA
CAAGTACTTCACCGCTCTCTCTATTGATAAGGAAATCACAACCGACTACC
GGCATACCAACAGTAGCTTTAGCAGTGGCTCGAAACCATCGAAACCATGA
CTCACAATTCTGGAACTACATCCACAAGTTAGTTCAACGTACGGGCAGCG
AACAAACCGACGCCCCAACAACATTGGTTTCATACCGCTACTGCTGTACG
CGAATTTCATATTGGAGTATATTATTATCAAAAGTGACTGCTGTTGGGTT
TGACGTGTAGCGTCCTTCACGCCCGAATCCCGTTGTCATGTTCCTGCGAG
CGTATAGCGAGCCGCCAACAGAGACACACAGCCGTGGCAAAGCATACTCG
TATCGTACAATATCATGTGATGTTCCCACTGCGCTTTGTTTTCGCCACTT
TCCTTCCGTTCTACTTCGAAGCATACCATAAAGCAATTATTTTTTTTTTT
TTTGTCGCGGGAAGGCTGAGTTCGGGGTTCCGCCGTCCCTTTCCCTCGTC
GGCTCTTTTTATTTTCCACTACATTCAGCCCAACCGGTCGGCCCGGTGGT
CTAGTGGTTCCCTCGTTAACCTGCTATGATATCATAGTTGGAAGGTCGCG
GGTTCGATTCTCTCTGAGAAAATTTCTTGCGACTTTACAGTGGAAAGCGA
ATTACTCGGGAACCATCAAGAATACAGCAGCAGCAGCAGCGGCGGCGGCA
GCGGCAAGTATGAGAACACAGCACCTGCACCATCTGCAGAACGCACACAC
ACATACACACACTCACAAGCACACACGCACGCGAGCAGAGGAGAGAGGGG
GGGAGAAGACACGGCGTGAGCGTGGCACGTGCCGACGCTGTGGGTATGAC
GTGGGTGTTTAGTATTTGCTAGAGCTGCAACTAACTGCTGTTCTTGCTTG
TGTGGTGTTTCGTGTGTGAAGTGATGGGAAAATGTTTGTCACGTGACGAA
GGGGTTCGACATGTTGGAACCAGACAAAGACGTATGATAGTATTTTCGTT
GTCTGAACCCCGGGGTTCGACCCCCTTCATTTTTTTTCCCCCCCGTGAAC
GTCTGATGATTCCCAAGTAGATGCCACGGAGCGGCTCTTGTCTCCCATCT
AGCGCCATGTAACGTACCCTTTTTTTAAACGCGTTTCCAGCCCCCGGCAC
GTCTGAGATCAGGCGACCTGTGCAAGTTTCAATCGCGCGGAAATCCCGGT
TGGTGCGCCAGGTATATTTACAAGGCGTGTCTGATGTAACTGCTGTCATG
CCGACAACAAAGTGGGCAACGCCCTGATTATCCTGGGATTTCGTACTCCT
CCAGAATGTGCAAGGACAGCTATCATAAGGGTCGAATCTGAATGTAAAGC
CTGCCGTTGCCAGTACCAATACGCCATTCTTTTTCCCGTGTGCCCGCCGA
GTCAGCAAGACGTTAACATGGTTGCTGACTGGCGGCCTGGCTTTCGGATG
CCCACGGCGTGTTGAGACCTGTGCACCGGTATAGCAGCAGGAGTATCAGC
ACGGCGGTATTTGTTATGCATCGCGCTGAATGATCAGCTTATTTGTTGAT
TTCCGCGCACTCTGCCCTTATATGTCGTAACCCTCCTCGTCCCGCACGCG
CGGACTGAACCTGTACCGCCTCCCCAACACATTGCAAAACCGCATGCATG
CATGTTCGACGCCCACGCCAACACCAACGCCAACGCCAACACCAACTCCA
ACGCCAACGCCAACACCAACACCAACGCAAACACCAACGCCATCACCAAC
GCCATCATCAACGCCATCACCAACGCCAACATTAATACATCGTGGACTAA
AACTGCACAATCTATACCGTAGCGATAGGCTGCGGCACATCGGCAAGGTA
TGGGCCGCCTACCTACAGCGAGCAGCGGCGGCGGCCATTGCCGCGACAGG
CGGCGGTGACGCGGGGACGGTGGCGTATCCTCCCCTGGGCATGGGCTTCG
GTCCCGCGACGGAGCCGGGGCCCCTGGACACTACGGGGCGGCTACCGAAC
GAGCTGCTGGAGTCGATGTTCGATTACTTGGATGAAGATATGACCATGAA
TTGCGCTTCCGTTGCTCGAAGGCGAGAGAGAATTCCACACGTTCTGTTGT
GTCGTATCGTGTCGTGTCGTGAACTTCCTTTACACGCGGTCCTGGCTTTC
ACTGCAATAATATGCATCATATGAGAGACGAGGAACATATGATGTTCGAG
TTGATGTTCCTCGGCGACTCGCGGGTGAGAAGATTACGCTCTGTCCTATG
GTATGATATCCGGCATTTCAGGCGGTGAACACACTATCTCAACCCCCCCC
CCCCCCCGTACTTCTCGCTTGCCTGCCCGTCGTGCGTATGCCTCGGGTTT
GGCTCCTTTGGATTCAAAGGTGGAGATCGTCGGCCATGGAACTCATCCTC
ACGTCCTTCCTCAGCCCCATCCTCTGGGTCATCCCGCAGGGGGCTGTGCA
CAACGTGATGACCAACCTGCACCCCACGGATTTGACACAGGTATGATATG
CTATGATATGATACATACCGCGTCCAAGTCGCTCTGCTACTGCTGCACAT
TGCACGCCACGTTTTGTCCACCACCGTCTTGCGGATGTTTCGCTGTGTGT
GTTGTGCTTATAGGTGTGCTTTCATCTCAAAACGTTGAAAGAGAAGTGTT
GCCGTTTCACAGAAGGGATGATTTGATTTCATAATCCAAAAATTGTTGCG
CGTGTCTGTGCAATCGCCCTCGAGATCGTCGCAACCCAGGGCCCCCGTCT
ATCCGCGATCGGACTGCTGTGATTTAATCGAAATAGTTATTTCAGAAGGT
TCTTGAATGTGTGTGTTGTCTTCACATTAAAGCCATTCCGATATCTCCTC
AGTACCCTCCATTGTCCGTACCCCTCCGATCATGGACGATTTCCGTGGTG
GTCACAGGCTGCTTGCCTCAAAGGGGGTACCAGGTATATAGTACGCGGGA
GATCCCATGAATCCACGAAAGGTATGAAAAGGAAACCCCAGCAAAACAAA
ACGGACCCCGACATGGAAACTGCAATTGTTTTCGTTTTTGACCTGACCAA
ACGAAAATCCAGGTATCATGCGTGTGTCAGGATTGGAGGCAGCTCGCTCA
GGACGTTCCGACTCTCGCCCCGGGGGTGGTAGACTAACGTCCCCGGAGAG
CAGTTTATGCGAAAGAGGCGTTAAGAATTGTCAAAAATATATACCAGTAT
GAACTTCGAGGTACATTTCGTATGATATGATATCGATCGTCCAAGAAAAC
TGCGGTTTTGTCCTTTATTCGTGTACATACTTTACTTCAAACAGACGACA
ATCAATGATATGATACTCTACGTACACTCGTCAGGACCGGGCATGATGTG
TTGATATCTCCACGATGAACCTTCATTCTGATCGAGGCACGAGTTGTTTT
TTCCTGCTGCATGCACAGCTGCATTTGTGTGTACAGGTATCGTCATAAAC
ATCGGCTAATGAAAAGCTCAGCACCGCGCCCCGTTGAGCGCTGTTGTACG
GAAGGACGCGGTGCGGTATTGACCGCAGTCGCACGAACCCGATCTGATTT
GATTTAGTTTGATTTGATTTGCAGTATCATAGTGTGGAATCTGTTTCTCG
TGTGTTCTTATTAATTTTCGGTGCGGAGTATCCACGGCTGATCCTCGGTG
TGTTGGGGTCTCTGTTTCTGTTTTTTTTCTTCTGGCTTTGTTTTCTTGCT
GGAAGTGTATTGTGTGTGCAAGTATGAACTCATTCTGAACCCTTTCACCC
CCCTGTGAAAAATCGTGCAACATTGTTTTTGAACAAAAGCTCTAAAAAGG
CAAAAATGGCCACGCGTTCTATTGTTTATAGAGTGCGTTTGAGAATTGAG
CCGTTAGCGAGGTAAAAGTTTAGCTATTGGGAGTCACGTGATACTCCAAG
TGACCAATAAAAAAAATGGCGACCCAAAATGGCGACATTTTGTCACCTGG
GTAAGAGGGTGAAGCACACATGGTTGGGCGATTTCAGCTCCGTGGGAGGC
GTTTGGCCATAACGCCTGTGGACAAAAATGCCCCCACTGGCCAAGGTGCG
TGCCTACCCCGAATGGTCTTGTGTAGACCTTGTCAAAAGGTGATTTTGAT
CGAAACCGGGAGGTGGACACCTTCGCAAGGTCTGGGCGAGGTCTCACTCG
GGGACACCTAGGCTGGTGGGGGTGTTTGTCCAACTGTGAAGAGGCTGGCG
CCGTTTTATCGTTTCTGTTTTTGGGAATCATGATGGAGATTGTTTGCGTA
TCTCATCTGCACGTTTGGATTTGTGAAAAGTGGTCTGTGAAGTGTCCTTT
ACTCGGATGACGATATTGTAGGCAGACGTTGATGATGGTCAATACTTTTG
CGGTACAATTGGCAGCAGTCTTGAGAAGTTCGTACGTACGAGATTATGGT
ACGTGCCGAGTTTATACGTCGTTTTTTTATGTCTCGGTTGGTGTGATCCA
TGGAGGCGGGTTTCTGTACTCGTGAACTGTTTTACGTCGTCGTCTGGAAA
TTGCCAACTATACCAGCATATCGTAGGCAGCCACACGTGTGCCGGCAAAC
ATAGTTAAGCTACGTATAATGATACGGTAAACAGCAGTATGAGCGTGTTT
ATATGTATGGTACGAAGTATGTTTCTTCTCGAGTTCAAGAAACGTTAACG
TTTGCATGTTTGGAAGCGCAAGCATTTAGCGTCCCCATGCGCGACGGGGT
AAGCACACGCCTCTCGATCCAAGCACGGGCGGGGATTTTATCAGTTAAAC
GGTACAGACAGAGGGAGAAGGTGCCCGCAGTTTTCCGAATTATCACTTGT
TGGTGTGATCATCCCCGCCCGGTCGACCGGGATGATTCTTAATTAACACT
TTAATTAAATTTCGTCCGTTCGCCTCAAAAACATGATTGAAGCGGAAGGG
GCCGTTGTTCGCTTGCACGGCGGTGTATCTGTCTGATTTGTATTGTTGGT
GTCTCGCAGCCGTTGGTTCTGTATCGCACGTGGGTCTCGCAGTACGAGTT
CTGCAGTTTGTTTTAGAGTGACGTTGCATATAATGGGTCCCCTTCGGGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig176:436937..442685-

>mRNA_P-littoralis_Contig176.118.3 ID=mRNA_P-littoralis_Contig176.118.3|Name=mRNA_P-littoralis_Contig176.118.3|organism=Pylaiella littoralis U1_48|type=CDS|length=669bp|location=Sequence derived from alignment at P-littoralis_Contig176:436937..442685- (Pylaiella littoralis U1_48)
ATGGCGAGGCAGCAGCTGTCAGGTCTCCCCAAAGAGGTCCTCTGGCGCGT
GATTCAGTTTGTGGACGAGTCTCATCGAAACCAGTGCAAGATGATTTCCC
GTCACTTCGGGTTGAACCGGAGCAGCTTGAGCGGGGGAAGTGTCCTTCGA
GCAAAGGGGAGCATCCCGAACGAACTGCTGGTTGGTCTGGTGCTACAGTT
TTTGGATGAGGAGCCAGATGATGGCGATAGGCTGCGGCACATCGGCAAGG
TATGGGCCGCCTACCTACAGCGAGCAGCGGCGGCGGCCATTGCCGCGACA
GGCGGCGGTGACGCGGGGACGGTGGCGTATCCTCCCCTGGGCATGGGCTT
CGGTCCCGCGACGGAGCCGGGGCCCCTGGACACTACGGGGCGGCTACCGA
ACGAGCTGCTGGAGTCGATGTTCGATTACTTGGATGAAGATATGACCATG
AATTGCGCTTCCGTTGCTCGAAGGTGGAGATCGTCGGCCATGGAACTCAT
CCTCACGTCCTTCCTCAGCCCCATCCTCTGGGTCATCCCGCAGGGGGCTG
TGCACAACGTGATGACCAACCTGCACCCCACGGATTTGACACAGGTATCA
TGCGTGTGTCAGGATTGGAGGCAGCTCGCTCAGGACGTTCCGACTCTCGC
CCCGGGGGTGGTAGACTAA
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