mRNA_P-littoralis_Contig176.109.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig176.109.1
Unique NamemRNA_P-littoralis_Contig176.109.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig176.109.1 vs. uniprot
Match: A0A6H5JN01_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN01_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 1.170e-17
Identity = 41/77 (53.25%), Postives = 54/77 (70.13%), Query Frame = 1 
Query:    1 MLGDGTCLSVAFFGDVDLLFRWDEDILVTLANVAVVPGFVVDLKYFNLIQENAEIILNQKGASMLGGNVQFIKYESG 231
            M+GDG C+ V+FFGD+DLL   DED+LVTL NVAV  G V++L   N +QE   I+L+  GAS + G V+F KY+ G
Sbjct:  124 MVGDGACMPVSFFGDLDLLLHCDEDVLVTLKNVAVAHGLVLNLISLNRVQERHRIVLDHAGASSMEGKVKFTKYDDG 200
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig176.109.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JN01_9PHAE1.170e-1753.25Reverse transcriptase Ty1/copia-type domain-contai... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig176contigP-littoralis_Contig176:352323..352706 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size384
Hectar predicted targeting categoryother localisation
Exons1
Cds size384
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789848.3021243-CDS-P-littoralis_Contig176:352322..3527061680789848.3021243-CDS-P-littoralis_Contig176:352322..352706Pylaiella littoralis U1_48CDSP-littoralis_Contig176 352323..352706 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig176.109.1prot_P-littoralis_Contig176.109.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig176 352323..352706 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig176.109.1

>prot_P-littoralis_Contig176.109.1 ID=prot_P-littoralis_Contig176.109.1|Name=mRNA_P-littoralis_Contig176.109.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=128bp
MLGDGTCLSVAFFGDVDLLFRWDEDILVTLANVAVVPGFVVDLKYFNLIQ
ENAEIILNQKGASMLGGNVQFIKYESGYSIPKYPGSARCLLCTTAPPGGF
PPAESTTSCVPKGGSFPRDFGIINDFR*
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mRNA from alignment at P-littoralis_Contig176:352323..352706+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig176.109.1 ID=mRNA_P-littoralis_Contig176.109.1|Name=mRNA_P-littoralis_Contig176.109.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=384bp|location=Sequence derived from alignment at P-littoralis_Contig176:352323..352706+ (Pylaiella littoralis U1_48)
ATGCTTGGTGATGGCACTTGTCTGTCAGTCGCTTTCTTCGGGGACGTGGA
CTTGCTGTTCCGCTGGGATGAGGACATCCTGGTGACGCTCGCGAACGTTG
CTGTTGTGCCGGGCTTCGTGGTGGATCTCAAATATTTCAACCTCATACAA
GAGAATGCTGAAATCATCCTCAACCAGAAAGGGGCTTCGATGCTGGGTGG
CAACGTGCAGTTCATCAAGTACGAAAGCGGCTATTCCATCCCCAAGTATC
CAGGTAGCGCACGATGCCTGCTGTGCACCACCGCACCGCCGGGCGGGTTT
CCCCCGGCGGAGAGTACAACCTCTTGTGTCCCCAAGGGGGGGTCGTTCCC
GCGGGACTTCGGCATAATCAATGATTTCCGGTAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig176:352323..352706+

>mRNA_P-littoralis_Contig176.109.1 ID=mRNA_P-littoralis_Contig176.109.1|Name=mRNA_P-littoralis_Contig176.109.1|organism=Pylaiella littoralis U1_48|type=CDS|length=384bp|location=Sequence derived from alignment at P-littoralis_Contig176:352323..352706+ (Pylaiella littoralis U1_48)
ATGCTTGGTGATGGCACTTGTCTGTCAGTCGCTTTCTTCGGGGACGTGGA
CTTGCTGTTCCGCTGGGATGAGGACATCCTGGTGACGCTCGCGAACGTTG
CTGTTGTGCCGGGCTTCGTGGTGGATCTCAAATATTTCAACCTCATACAA
GAGAATGCTGAAATCATCCTCAACCAGAAAGGGGCTTCGATGCTGGGTGG
CAACGTGCAGTTCATCAAGTACGAAAGCGGCTATTCCATCCCCAAGTATC
CAGGTAGCGCACGATGCCTGCTGTGCACCACCGCACCGCCGGGCGGGTTT
CCCCCGGCGGAGAGTACAACCTCTTGTGTCCCCAAGGGGGGGTCGTTCCC
GCGGGACTTCGGCATAATCAATGATTTCCGGTAG
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