mRNA_P-littoralis_Contig176.89.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig176.89.1
Unique NamemRNA_P-littoralis_Contig176.89.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig176.89.1 vs. uniprot
Match: A0A6H5K9K2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9K2_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 1.400e-17
Identity = 44/53 (83.02%), Postives = 46/53 (86.79%), Query Frame = 1 
Query:  100 GVVAGSGTVTSEGLDVEMARKMTKSQLFALTKGTLVDLIKAGGGDAKVWRKKD 258
            GVVAGSGTVT+EGL VE  RKMTK QLF LTKGTLVD IKA GGDAKVWRKK+
Sbjct:  291 GVVAGSGTVTNEGLAVETVRKMTKPQLFELTKGTLVDHIKAAGGDAKVWRKKE 343
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BLAST of mRNA_P-littoralis_Contig176.89.1 vs. uniprot
Match: A0A6H5KW14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW14_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 2.270e-16
Identity = 47/60 (78.33%), Postives = 50/60 (83.33%), Query Frame = 1 
Query:    1 RQQLRATGAKGAATAKGAAPVGGGTDGTDQLAGGVVAGSGTVTSEGLDVEMARKMTKSQL 180
            RQ LRAT AKG ATAKG APVGGG DGT +LAGGV+AGSGTVT+EGL VE  RKMTK QL
Sbjct:  321 RQNLRATSAKGEATAKGVAPVGGGIDGTSRLAGGVMAGSGTVTNEGLAVETVRKMTKPQL 380
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig176.89.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K9K2_9PHAE1.400e-1783.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KW14_9PHAE2.270e-1678.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig176contigP-littoralis_Contig176:257593..257851 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size260
Hectar predicted targeting categoryother localisation
Exons1
Cds size258
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789847.9765754-CDS-P-littoralis_Contig176:257593..2578511680789847.9765754-CDS-P-littoralis_Contig176:257593..257851Pylaiella littoralis U1_48CDSP-littoralis_Contig176 257594..257851 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig176.89.1prot_P-littoralis_Contig176.89.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig176 257594..257851 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig176.89.1

>prot_P-littoralis_Contig176.89.1 ID=prot_P-littoralis_Contig176.89.1|Name=mRNA_P-littoralis_Contig176.89.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=86bp
RQQLRATGAKGAATAKGAAPVGGGTDGTDQLAGGVVAGSGTVTSEGLDVE
MARKMTKSQLFALTKGTLVDLIKAGGGDAKVWRKKD
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mRNA from alignment at P-littoralis_Contig176:257593..257851-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig176.89.1 ID=mRNA_P-littoralis_Contig176.89.1|Name=mRNA_P-littoralis_Contig176.89.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=259bp|location=Sequence derived from alignment at P-littoralis_Contig176:257593..257851- (Pylaiella littoralis U1_48)
AGACAACAGCTAAGAGCCACCGGTGCGAAGGGGGCGGCCACAGCGAAGGG
GGCGGCTCCAGTTGGTGGGGGGACTGATGGAACAGACCAGTTGGCGGGTG
GTGTCGTGGCAGGCTCGGGTACTGTGACGAGTGAGGGCCTTGATGTTGAG
ATGGCGAGAAAGATGACCAAGTCACAGTTGTTCGCACTGACCAAGGGCAC
ACTAGTGGACCTTATAAAAGCTGGGGGTGGCGACGCCAAGGTGTGGAGAA
AGAAGGATT
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Coding sequence (CDS) from alignment at P-littoralis_Contig176:257593..257851-

>mRNA_P-littoralis_Contig176.89.1 ID=mRNA_P-littoralis_Contig176.89.1|Name=mRNA_P-littoralis_Contig176.89.1|organism=Pylaiella littoralis U1_48|type=CDS|length=258bp|location=Sequence derived from alignment at P-littoralis_Contig176:257593..257851- (Pylaiella littoralis U1_48)
AGACAACAGCTAAGAGCCACCGGTGCGAAGGGGGCGGCCACAGCGAAGGG
GGCGGCTCCAGTTGGTGGGGGGACTGATGGAACAGACCAGTTGGCGGGTG
GTGTCGTGGCAGGCTCGGGTACTGTGACGAGTGAGGGCCTTGATGTTGAG
ATGGCGAGAAAGATGACCAAGTCACAGTTGTTCGCACTGACCAAGGGCAC
ACTAGTGGACCTTATAAAAGCTGGGGGTGGCGACGCCAAGGTGTGGAGAA
AGAAGGAT
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