mRNA_P-littoralis_Contig176.87.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig176.87.1
Unique NamemRNA_P-littoralis_Contig176.87.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig176.87.1 vs. uniprot
Match: A0A6H5K6I9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6I9_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 7.080e-15
Identity = 42/52 (80.77%), Postives = 48/52 (92.31%), Query Frame = 1 
Query:    1 RAKIMLAVSEAETAENVRARSRNSSVAVLCPRYITVEPLSAPPVVEAPVPAA 156
            R++IMLAV++AE AENVRARSRNS  AVLCPRYI+VEPL+A PVVEAPVPAA
Sbjct:  299 RSRIMLAVTQAEAAENVRARSRNSPNAVLCPRYISVEPLAAAPVVEAPVPAA 350
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BLAST of mRNA_P-littoralis_Contig176.87.1 vs. uniprot
Match: D7FZI2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZI2_ECTSI)

HSP 1 Score: 67.0 bits (162), Expect = 1.230e-11
Identity = 38/52 (73.08%), Postives = 44/52 (84.62%), Query Frame = 1 
Query:    1 RAKIMLAVSEAETAENVRARSRNSSVAVLCPRYITVEPLSAPPVVEAPVPAA 156
            R +IMLAV++A  AENVR+RSRNS  AVLCPRYI+VEPL+A PVVE  VPAA
Sbjct:  971 RGRIMLAVTQAVAAENVRSRSRNSPNAVLCPRYISVEPLAATPVVETSVPAA 1022
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig176.87.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K6I9_9PHAE7.080e-1580.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZI2_ECTSI1.230e-1173.08Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig176contigP-littoralis_Contig176:255301..255459 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size161
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size147
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789847.87167-UTR-P-littoralis_Contig176:255300..2553121680789847.87167-UTR-P-littoralis_Contig176:255300..255312Pylaiella littoralis U1_48UTRP-littoralis_Contig176 255301..255312 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789847.9035785-CDS-P-littoralis_Contig176:255312..2554591680789847.9035785-CDS-P-littoralis_Contig176:255312..255459Pylaiella littoralis U1_48CDSP-littoralis_Contig176 255313..255459 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig176.87.1prot_P-littoralis_Contig176.87.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig176 255313..255459 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig176.87.1

>prot_P-littoralis_Contig176.87.1 ID=prot_P-littoralis_Contig176.87.1|Name=mRNA_P-littoralis_Contig176.87.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=49bp
MLAVSEAETAENVRARSRNSSVAVLCPRYITVEPLSAPPVVEAPVPAAT
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mRNA from alignment at P-littoralis_Contig176:255301..255459+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig176.87.1 ID=mRNA_P-littoralis_Contig176.87.1|Name=mRNA_P-littoralis_Contig176.87.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=159bp|location=Sequence derived from alignment at P-littoralis_Contig176:255301..255459+ (Pylaiella littoralis U1_48)
AGGGCCAAAATCATGTTGGCAGTATCAGAGGCGGAGACCGCCGAGAATGT
TCGCGCGCGATCCAGGAATTCATCTGTCGCTGTTTTGTGTCCGCGTTACA
TTACCGTCGAACCCCTTTCGGCGCCCCCGGTAGTAGAGGCCCCCGTCCCG
GCCGCCACG
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Coding sequence (CDS) from alignment at P-littoralis_Contig176:255301..255459+

>mRNA_P-littoralis_Contig176.87.1 ID=mRNA_P-littoralis_Contig176.87.1|Name=mRNA_P-littoralis_Contig176.87.1|organism=Pylaiella littoralis U1_48|type=CDS|length=147bp|location=Sequence derived from alignment at P-littoralis_Contig176:255301..255459+ (Pylaiella littoralis U1_48)
ATGTTGGCAGTATCAGAGGCGGAGACCGCCGAGAATGTTCGCGCGCGATC
CAGGAATTCATCTGTCGCTGTTTTGTGTCCGCGTTACATTACCGTCGAAC
CCCTTTCGGCGCCCCCGGTAGTAGAGGCCCCCGTCCCGGCCGCCACG
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