mRNA_P-littoralis_Contig176.83.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig176.83.1
Unique NamemRNA_P-littoralis_Contig176.83.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig176.83.1 vs. uniprot
Match: A0A6H5K9K2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9K2_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 5.900e-10
Identity = 35/56 (62.50%), Postives = 43/56 (76.79%), Query Frame = 1 
Query:    1 EGGRVDSGSGNGRVDVVGSGSIGEISNVRVSQDSSAGGESLEWTDALPLEDAEVSK 168
            EGG VD GSGNG V+V G G  G+ISNV V++ S+ GGE LEW DA+PLE+A +SK
Sbjct:  361 EGGLVDHGSGNGPVNVAGDGGDGKISNVWVNRVSATGGEGLEWIDAVPLEEAVMSK 416
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig176.83.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K9K2_9PHAE5.900e-1062.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig176contigP-littoralis_Contig176:245717..245885 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size171
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size168
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789847.7921352-CDS-P-littoralis_Contig176:245716..2458841680789847.7921352-CDS-P-littoralis_Contig176:245716..245884Pylaiella littoralis U1_48CDSP-littoralis_Contig176 245717..245884 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig176.83.1prot_P-littoralis_Contig176.83.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig176 245717..245884 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig176.83.1

>prot_P-littoralis_Contig176.83.1 ID=prot_P-littoralis_Contig176.83.1|Name=mRNA_P-littoralis_Contig176.83.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=56bp
EGGRVDSGSGNGRVDVVGSGSIGEISNVRVSQDSSAGGESLEWTDALPLE
DAEVSK
back to top

mRNA from alignment at P-littoralis_Contig176:245717..245885+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig176.83.1 ID=mRNA_P-littoralis_Contig176.83.1|Name=mRNA_P-littoralis_Contig176.83.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=169bp|location=Sequence derived from alignment at P-littoralis_Contig176:245717..245885+ (Pylaiella littoralis U1_48)
GAAGGAGGGCGGGTAGATAGTGGGTCGGGAAACGGGCGAGTCGATGTGGT
GGGGAGCGGCAGTATTGGCGAAATTTCGAACGTCAGGGTTAGCCAGGACT
CGTCGGCGGGCGGCGAAAGTCTTGAATGGACCGATGCCTTGCCGTTAGAG
GATGCCGAGGTGTCGAAGC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig176:245717..245885+

>mRNA_P-littoralis_Contig176.83.1 ID=mRNA_P-littoralis_Contig176.83.1|Name=mRNA_P-littoralis_Contig176.83.1|organism=Pylaiella littoralis U1_48|type=CDS|length=168bp|location=Sequence derived from alignment at P-littoralis_Contig176:245717..245885+ (Pylaiella littoralis U1_48)
GAAGGAGGGCGGGTAGATAGTGGGTCGGGAAACGGGCGAGTCGATGTGGT
GGGGAGCGGCAGTATTGGCGAAATTTCGAACGTCAGGGTTAGCCAGGACT
CGTCGGCGGGCGGCGAAAGTCTTGAATGGACCGATGCCTTGCCGTTAGAG
GATGCCGAGGTGTCGAAG
back to top