mRNA_P-littoralis_Contig176.63.2 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig176.63.2 vs. uniprot
Match: A0A6H5JUK2_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUK2_9PHAE) HSP 1 Score: 213 bits (541), Expect = 7.310e-63 Identity = 129/305 (42.30%), Postives = 173/305 (56.72%), Query Frame = 1
Query: 1 NAWYYRFLKRHRFSIRRKTSVGQKKPEGWEGKAWAFIQKLRSSLREHAQEA------------------------------IFALLYNMDQTPIQAEMPPDTTVEKTGTKSACITTGGETEKLRYTVVLAVRGDGQKVRPRIIYKGNPFV------------------------GGTNNFGYPAGGISLGVQKSSWCDGTQSDEWVTQDFMRRPGSTSR-DQRPSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVRARYTSWIRDNYG--RSGQKVTAPSRG 744
N+WY RF KR+ FSIRR+TSVGQK P+G+EG AWA + KLR +L A E +F L NMDQTP+Q EMP +TT+EKTG K A I+TGG+ EK R+T+VLAV DG+KV PRII+KG PF+ +PA G+S GVQ+ SW D + + W++ + RP + S QRP +LVLDDF+CH++E + L A T+V+++ GGLTP+ QPLDR +NK+ KR +R +YT++ RSG K+ P RG
Sbjct: 32 NSWYQRFRKRNGFSIRRRTSVGQKLPKGYEGMAWATVMKLREALVRRAGEIYARRHPPAPDESPIKGEDLTFEQLASVEAEVFKELGNMDQTPVQHEMPVETTLEKTGAKDARISTGGK-EKERFTLVLAVMADGKKVSPRIIFKGTPFIPPAVSGKGKSTLPRKNSVAWEIHPANRAKHDHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGYIAALKRDANTIVIVIPGGLTPLLQPLDRMLNKQMKRLLRGKYTAYSASAVADARSG-KLKPPERG 334
BLAST of mRNA_P-littoralis_Contig176.63.2 vs. uniprot
Match: A0A6H5K6L9_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6L9_9PHAE) HSP 1 Score: 209 bits (531), Expect = 7.220e-61 Identity = 130/305 (42.62%), Postives = 173/305 (56.72%), Query Frame = 1
Query: 1 NAWYYRFLKRHRFSIRRKTSVGQKKPEGWEGKAWAFIQKLRSSLREHAQEA------------------------------IFALLYNMDQTPIQAEMPPDTTVEKTGTKSACITTGGETEKLRYTVVLAVRGDGQKVRPRIIYKGNPFVGGTNN------------------------FGYPAGGISLGVQKSSWCDGTQSDEWVTQDFMRRPGSTSR-DQRPSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVRARYTSWIRDNYG--RSGQKVTAPSRG 744
N+WY RF KR+ FSIRR+TSVGQK P+G EG AWA + KLR +L + A E +F L NMDQTP+Q E+P +TT+EKTG K A I+TGG+ EK R+T+VLAV DG+KV PRII+KG PF T + G+PA G+S GVQ+ SW D + + W++ + RP + S QRP +LVLDDF+CH++E F L A T+V+ + G LTP+ QPLDR +NK+ KR +R +YT++ RSG K+ P RG
Sbjct: 32 NSWYQRFRKRNGFSIRRRTSVGQKLPKGDEGMAWATVMKLREALVKRAGEIYARRHPPAPDESPIKGEDLTSEQLASVEAEVFEELGNMDQTPVQHEIPVETTLEKTGAKDARISTGGK-EKERFTLVLAVMADGKKVSPRIIFKGTPFTPPTVSGKGKSTLPRKNSVAWEIHPANRAKHGHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALKRDANTIVIFIPGRLTPLLQPLDRMLNKQMKRLLRRKYTAYSASAVADARSG-KLKPPERG 334
BLAST of mRNA_P-littoralis_Contig176.63.2 vs. uniprot
Match: A0A6H5JHT8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHT8_9PHAE) HSP 1 Score: 210 bits (534), Expect = 1.550e-59 Identity = 127/305 (41.64%), Postives = 172/305 (56.39%), Query Frame = 1
Query: 1 NAWYYRFLKRHRFSIRRKTSVGQKKPEGWEGKAWAFIQKLRSSLREHAQEA------------------------------IFALLYNMDQTPIQAEMPPDTTVEKTGTKSACITTGGETEKLRYTVVLAVRGDGQKVRPRIIYKGNPFVGGTNN------------------------FGYPAGGISLGVQKSSWCDGTQSDEWVTQDFMRRPGSTSR-DQRPSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVRARYTSWIRDNYG--RSGQKVTAPSRG 744
N+WY RF KR+ FSIRR+TSVGQK P+G+EG AWA + KL +L + A E +F + NMDQ P+Q EMP +TT++KTG K A I+TGG EK R+T+VLAV DG+KV PRII++G PF+ T + G+PA G+S GVQ+ SW D + + W++ + RP + S QRP +LVLDDF+CH +E F L A T+V+ + GGLTP+ QPLDR +NK+ KR +R +YT++ RSG K+ P RG
Sbjct: 226 NSWYQRFRKRNGFSIRRRTSVGQKLPKGYEGMAWATVMKLCEALVKRAGEIYARRHPPAPDESPIKGEDLNSEQLASVEAEVFEEVGNMDQMPVQHEMPVETTLDKTGAKDARISTGGGNEKERFTLVLAVTADGKKVSPRIIFEGTPFIPPTVSGKGKSTRPRKNPVAWEMHPANRAKHGHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPRILVLDDFKCHNDEGFIAALKRDANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGKYTAYSPSAVADARSG-KLKPPERG 529
BLAST of mRNA_P-littoralis_Contig176.63.2 vs. uniprot
Match: A0A6H5JTG5_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTG5_9PHAE) HSP 1 Score: 197 bits (502), Expect = 2.300e-55 Identity = 128/313 (40.89%), Postives = 171/313 (54.63%), Query Frame = 1
Query: 1 NAWYYRFLKRHRFSIRRKTSVGQKKPEGWEGKAWAFIQKLRSSLREHAQEA------------------------------IFALLYNMDQTPIQAEMPPDTTVEKTGTKSACITTGGETEKLRYTVVLAVRGDGQKVRPRIIYKGNPFVGGTNN------------------------FGYPAGGISLGVQKSSWCDGTQSDEWVTQDF--------MRRPGSTSR-DQRPSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVRARYTSWIRDNYG--RSGQKVTAPSRG 744
N+WY RF KR+ FSIRR+ SVGQK P+G+EG AWA + KLR +L + A E +F L NMDQTP+Q EMP +TT+E TG K A I+TGG+ EK R+T+VLAV DG+ V P II+KG PF+ T + G+PA G+S GVQ+ SW + + W+ + M RP + S QRP +LVLDDF+CH++E F L A T+V+ + GGLTP+ QPLDR +NK+ KR +R +YT++ RSG K+ P RG
Sbjct: 186 NSWYQRFRKRNGFSIRRRASVGQKLPKGYEGMAWATVTKLREALVKRAGEIYARRHPPAPDESPIKGEDLTSEQPASVEAEVFEELGNMDQTPVQHEMPVETTLEDTGGKDARISTGGK-EKERFTLVLAVMADGKMVSPCIIFKGTPFIPPTVSGKGKSTLPRKNSVAWEVHPANRAKHGHPANGMSFGVQEKSWSGQQECNGWIPGSWKLCPNNGSMXRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALNRDANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGKYTAYSAPAVADARSG-KLKPPERG 496
BLAST of mRNA_P-littoralis_Contig176.63.2 vs. uniprot
Match: A0A6H5K8Y4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8Y4_9PHAE) HSP 1 Score: 201 bits (510), Expect = 8.420e-55 Identity = 122/284 (42.96%), Postives = 157/284 (55.28%), Query Frame = 1
Query: 4 AWYYRFLKRHRFSIRRKTSVGQKKPEGWEGKAWAFIQKLRSSLREHAQEA------------------------------IFALLYNMDQTPIQAEMPPDTTVEKTGTKSACITTGGETEKLRYTVVLAVRGDGQKVRPRIIYKGNPFV------------------------GGTNNFGYPAGGISLGVQKSSWCDGTQSDEWVTQDFMRRP--GSTSRDQRPSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVRARYTS 687
+WY RF KR++FSIRR+TSVGQK P+G EG AWA + KLR +L E A E +F L NMDQTP+Q EMP +TT+E TG K A I TGG+ EK R+T+ LAV DG+KV RII+KG PFV + G P GG+S GVQ+ SWCD + W+ + RP GS R QR +LVLDDF+CH+++ F L A T+V+ + GGL P+ QPLDR +NK+ KR +R YT+
Sbjct: 187 SWYQRFCKRNKFSIRRRTSVGQKLPKGHEGMAWATLMKLRKALLERAGEIYAQRYPPAPGESPIRGEDLSSSQLELVTDELFEELGNMDQTPVQHEMPVETTLENTGAKDARIATGGK-EKERFTLCLAVSADGKKVPLRIIFKGTPFVPPATPGKGKATQPRKNSIAWEVLPANRSKHGLPVGGMSFGVQEKSWCDLRECKLWIKDSWKLRPNNGSIVR-QRRCILVLDDFKCHKDDGFIAALKREANTIVIFIPGGLIPLFQPLDRMLNKQMKRLLRGMYTA 468
BLAST of mRNA_P-littoralis_Contig176.63.2 vs. uniprot
Match: A0A6H5K583_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K583_9PHAE) HSP 1 Score: 197 bits (500), Expect = 1.810e-53 Identity = 121/278 (43.53%), Postives = 153/278 (55.04%), Query Frame = 1
Query: 7 WYYRFLKRHRFSIRRKTSVGQKKPEGWEGKAWAFIQKLRSSLREHAQEA------------------------------IFALLYNMDQTPIQAEMPPDTTVEKTGTKSACITTGGETEKLRYTVVLAVRGDGQKVRPRIIYKGNPFV------------------------GGTNNFGYPAGGISLGVQKSSWCDGTQSDEWVTQDFMRRP--GSTSRDQRPSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVR 672
WY+ F +RH FSIRR+TSVGQK P G+EG A+A + KLR++L E A E +F L NMDQTP+Q EMP +TT+EK G K A I+TGG+ EK R+T LAV DG KV RII+KG PF+ FGYP G+ VQ+ SWCD + W+++ + RP GS + QR S+LVLDDFRCHR E F K L T V+++ GGLTP+ QPLDR +NKE KR +R
Sbjct: 103 WYHCFRERHGFSIRRRTSVGQKLPTGYEGLAFATLMKLRTALLERAGEIYARRNPPASGESPIKGKDLTPAQLESVAAKVFEELGNMDQTPVQQEMPVETTLEKRGVKDARISTGGK-EKDRFTPCLAVMADGGKVPQRIIFKGKPFIPPSTAGREKNTQTRKGYIAAEVLLANRTKFGYPVSGMFFVVQEKSWCDARECTLWLSESWRFRPNHGSVIK-QRHSILVLDDFRCHRSESFVKDLRRRTNTTVILIPGGLTPLLQPLDRMLNKEMKRLMR 378
BLAST of mRNA_P-littoralis_Contig176.63.2 vs. uniprot
Match: A0A6H5KRZ8_9PHAE (DDE-1 domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRZ8_9PHAE) HSP 1 Score: 188 bits (478), Expect = 1.340e-51 Identity = 122/297 (41.08%), Postives = 159/297 (53.54%), Query Frame = 1
Query: 1 NAWYYRFLKRHRFSIRRKTSVGQKKPEGWEGKAWAFIQKLRSSLREHAQEA------------------------------IFALLYNMDQTPIQAEMPPDTTVEKTGTKSACITTGGETEKLRYTVVLAVRGDGQKVRPRIIYKGNPFV---------------------------------GGTNNFGYPA----GGISLGVQKSSWCDGTQSDEWVTQDFMRRPGSTSR-DQRPSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVRARYTS 687
N+WY RF KR+ FSIRR+TSVGQK P+G+EG AWA + KLR +L + A E +F L NMDQTP+Q EMP +TT+EKTG K A I+TGGE EK R+T+VLAV DG+KV PRII+KG PF+ GG N P G + + SW D + + W+ + RP + S QRP +LVLDDF+CH++E F L AKT V+ + GGLT + QPLDR +NK+ KR +R +YT+
Sbjct: 214 NSWYQRFRKRNGFSIRRRTSVGQKLPKGYEGMAWATVMKLREALVKRAGEIYARRHPPAPDESPIKGEDLTSEQLASVEAEVFEELGNMDQTPVQHEMPVETTLEKTGAKDARISTGGE-EKERFTLVLAVMADGKKVSPRIIFKGTPFIPPTVSGKVKSTLPRKNSVAWEIHSANXARSGCHGGRQNDVSPRIIFKGTPFIPPTEKSWSDQRECNGWIPGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALKRGAKT-VIFIPGGLTSLLQPLDRMLNKQMKRLLRGKYTA 508
BLAST of mRNA_P-littoralis_Contig176.63.2 vs. uniprot
Match: A0A6H5KE45_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE45_9PHAE) HSP 1 Score: 186 bits (473), Expect = 1.930e-51 Identity = 121/309 (39.16%), Postives = 155/309 (50.16%), Query Frame = 1
Query: 4 AWYYRFLKRHRFSIRRKTSVGQKKPEGWEGKAWAFIQKLRSSLREHAQEA------------------------------IFALLYNMDQTPIQAEMPPDTTVEKTGTKSACITTGGET-------------------------EKLRYTVVLAVRGDGQKVRPRIIYKGNPFV------------------------GGTNNFGYPAGGISLGVQKSSWCDGTQSDEWVTQDFMRRP--GSTSRDQRPSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVRARYTS 687
+WY RF KR++FSIRR+TSVG + P+G EG AWA + KLR +L E A E +F L NMDQTP+Q EMP +TT+EKTG K A I TG EK R+T+ LAV DG KV RII+KG PFV + G P GG+S GVQ+ SWCD + W+ + RP GS R QR +LVLDDF+CH+++ F L A T+V+ + GGLTP+ QPLDR +NK+ KR +R YT+
Sbjct: 120 SWYQRFRKRNKFSIRRRTSVGIRLPKGHEGMAWATLMKLRKALLERAGEIYAQRYPPAPGESPIRGEDLSSSQLELVTDELFKDLGNMDQTPVQYEMPVETTLEKTGAKDARIATGAGVCCIRTILKPLPYPPTSCILPPPPGKEKERFTLCLAVSADGTKVPLRIIFKGTPFVPPATPGKGKATQPRKNSIAWEVLPANRSKHGLPVGGMSFGVQEKSWCDLREYKLWIKDSWKLRPNNGSVVR-QRRCILVLDDFKCHKDDGFIAALKREANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGMYTA 427
BLAST of mRNA_P-littoralis_Contig176.63.2 vs. uniprot
Match: A0A6H5JQM5_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQM5_9PHAE) HSP 1 Score: 184 bits (466), Expect = 2.850e-50 Identity = 118/285 (41.40%), Postives = 155/285 (54.39%), Query Frame = 1
Query: 7 WYYRFLKRHRFSIRRKTSVGQKKPEGWEGKAWAFIQKLRSSLREHAQEA------------------------------IFALLYNMDQTPIQAEMPPDTTVEKTGTKSACITTGGETEKLRYTVVLAVRGDGQKVRPRIIYKGNPFV------------------------GGTNNFGYPAGGISLGVQKSSWCDGTQSDEWVTQDFMRRP--GSTSRDQRPSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVRARYTSWI 693
WY+RF +RH SIRR+TSVGQK P G+EG A+A + KLR++L E A E +F L NMDQTP+Q EMP +TT+EK G K A I+TGG+ EK R+T+ LAV DG KV RII+KG PF+ NFGYP G+S GVQ+ SW D + W+++ + RP GS + QR S+LVLDDFR + T V+++ GGLTP+ QPLDR ++KE KR +R RYT ++
Sbjct: 207 WYHRFRERHGLSIRRRTSVGQKLPTGYEGLAFATLMKLRTALLERAGEIYARRNPPASGESPIKGKDLSPAQLESVATEVFEELGNMDQTPVQQEMPVETTLEKGGAKDARISTGGK-EKERFTLCLAVMADGGKVPLRIIFKGKPFIPPSTARRGKNTQPRKGSIAAEVLPANQTNFGYPVSGMSFGVQERSWYDACECTLWLSESWGFRPNHGSVIK-QRHSILVLDDFRTN--------------TTVILIPGGLTPLLQPLDRMLDKEMKRLMRRRYTQYM 475
BLAST of mRNA_P-littoralis_Contig176.63.2 vs. uniprot
Match: D7FXD3_ECTSI (DDE-1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXD3_ECTSI) HSP 1 Score: 164 bits (414), Expect = 8.820e-46 Identity = 99/253 (39.13%), Postives = 133/253 (52.57%), Query Frame = 1
Query: 97 AWAFIQKLRSSLREHAQEA------------------------------IFALLYNMDQTPIQAEMPPDTTVEKTGTKSACITTGGETEKLRYTVVLAVRGDGQKVRPRIIYKGNPFVG------------------------GTNNFGYPAGGISLGVQKSSWCDGTQSDEWVTQDFMRRPGSTSR-DQRPSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVRARYTSW 690
AWA + KLR +L E A E +F L NMDQTP+Q EMP +T++EKTG K A I TGG+ EK R+T+ LAV GD +KV R I+KG P + + GYP GG+S GVQ+ SWCD + W+ + RP + S QRP +LVLDDF+CH+++ F +L A T+V+ + GGLTP+ QPLDR +NK KR +R YT++
Sbjct: 2 AWATLMKLREALVERADEIYARRNPPAPGESPIKGEDLTSEQLESVTAEVFVELGNMDQTPVQHEMPVETSLEKTGAKDARIATGGK-EKERFTLCLAVTGDCKKVPLRTIFKGTPLIPPDRPGKGKATQPRKNSIAWEMLPENRSKNGYPVGGMSFGVQEKSWCDLRECKLWIKHSWTLRPNNGSLVKQRPCILVLDDFKCHKDDTFIAELKRQANTIVIFIPGGLTPLLQPLDRMLNKRMKRLLRGMYTNY 253 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig176.63.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig176.63.2 >prot_P-littoralis_Contig176.63.2 ID=prot_P-littoralis_Contig176.63.2|Name=mRNA_P-littoralis_Contig176.63.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=196bp MDQTPIQAEMPPDTTVEKTGTKSACITTGGETEKLRYTVVLAVRGDGQKVback to top mRNA from alignment at P-littoralis_Contig176:175686..177229+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig176.63.2 ID=mRNA_P-littoralis_Contig176.63.2|Name=mRNA_P-littoralis_Contig176.63.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=1544bp|location=Sequence derived from alignment at P-littoralis_Contig176:175686..177229+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig176:175686..177229+ >mRNA_P-littoralis_Contig176.63.2 ID=mRNA_P-littoralis_Contig176.63.2|Name=mRNA_P-littoralis_Contig176.63.2|organism=Pylaiella littoralis U1_48|type=CDS|length=588bp|location=Sequence derived from alignment at P-littoralis_Contig176:175686..177229+ (Pylaiella littoralis U1_48)back to top |