mRNA_P-littoralis_Contig176.114.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig176.114.1
Unique NamemRNA_P-littoralis_Contig176.114.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig176.114.1 vs. uniprot
Match: A0A6H5JAD4_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAD4_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 6.410e-9
Identity = 65/160 (40.62%), Postives = 84/160 (52.50%), Query Frame = 3 
Query:  330 LSAKIADLTLSADPAGLAGANPDGMMPPTPLPDTRG----AVGGLQLAAPGVLRQGPPLFGAAAEPRASTWGAGGGA-TTPSAG-VAAAVEGGRLGGSAVETVVGTYPQQRSGLNLTPPPWEGSEKRN----DFVPSVPS--LAIGASAPSKGVSPPSLA 773
            L+AKI DLTLSAD  GL G NPDGMMP TP+PD  G    A   LQ  A G   +     G      +   G+G      P+ G VAAA        + V   VG   Q+R GLNLTPPPWE +++R+      V S+P+  +A+ AS+   G +P + A
Sbjct:  490 LTAKIEDLTLSADAVGLEGPNPDGMMPRTPVPDVSGDGALAGAALQRGAAGFAEEVGGTSGGLRPAGSGDEGSGXXXXAAPAVGAVAAAGVAAHHPAAVVVGDVGELAQKRGGLNLTPPPWEANQRRDLPAAAAVSSLPTPPVAVAASSLPSGATPSAFA 649
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig176.114.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JAD4_9PHAE6.410e-940.63Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig176contigP-littoralis_Contig176:432394..435567 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size3174
Hectar predicted targeting categoryother localisation
Exons1
Cds size1677
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789845.4460766-UTR-P-littoralis_Contig176:432393..4324491680789845.4460766-UTR-P-littoralis_Contig176:432393..432449Pylaiella littoralis U1_48UTRP-littoralis_Contig176 432394..432449 +
1680789845.466385-UTR-P-littoralis_Contig176:434126..4355671680789845.466385-UTR-P-littoralis_Contig176:434126..435567Pylaiella littoralis U1_48UTRP-littoralis_Contig176 434127..435567 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789845.4556997-CDS-P-littoralis_Contig176:432449..4341261680789845.4556997-CDS-P-littoralis_Contig176:432449..434126Pylaiella littoralis U1_48CDSP-littoralis_Contig176 432450..434126 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig176.114.1prot_P-littoralis_Contig176.114.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig176 432450..434126 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig176.114.1

>prot_P-littoralis_Contig176.114.1 ID=prot_P-littoralis_Contig176.114.1|Name=mRNA_P-littoralis_Contig176.114.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=559bp
MFGMQAAAVGTAEQARGGGEEEARHQHHRHQDDPRPAVPPCTRRASSQDP
AVMDDDTDEEETGEGGVADVQQQQQQRSEEQEQGDVSTAALLSAKIADLT
LSADPAGLAGANPDGMMPPTPLPDTRGAVGGLQLAAPGVLRQGPPLFGAA
AEPRASTWGAGGGATTPSAGVAAAVEGGRLGGSAVETVVGTYPQQRSGLN
LTPPPWEGSEKRNDFVPSVPSLAIGASAPSKGVSPPSLASPEESSAPAPP
PADAFDADAASRAPVETKSSELEPDRPPLSSGGGGSGSDERDGVSGGSLF
PEEIVPQEETSATMTQEGTASALSTDEVDLDLAGNDGRGKAEKEGVGAGE
SEDDVGGKSAPPPSPADLPGSVSAGCCEGGDGAGVARTYTAGEMEAPGVA
AGASPEQPVSSERATALGGEAAAAAAAAEPTVTVAEATATRGEADGSPSS
AAVAAWGGGGGGGEPAEDEGAVQAKGEAVVAAPGFSSSEDDGSLRCDPET
PTGSAPATGDAVAERKAEGFAAIHGRQDSGVIEHKSVEPGGGSKEDLGDD
AGRAWSKE*
back to top

mRNA from alignment at P-littoralis_Contig176:432394..435567+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig176.114.1 ID=mRNA_P-littoralis_Contig176.114.1|Name=mRNA_P-littoralis_Contig176.114.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3174bp|location=Sequence derived from alignment at P-littoralis_Contig176:432394..435567+ (Pylaiella littoralis U1_48)
GGAGGGACGACGAGCAACAGGGGGGCGCCGTAGTTTCCTCGGAGGCGGAC
GCGTTGATGTTCGGGATGCAGGCGGCTGCCGTGGGGACTGCCGAGCAGGC
GAGAGGGGGCGGCGAGGAGGAAGCGCGTCATCAGCATCATCGTCATCAGG
ATGATCCTCGTCCTGCGGTGCCCCCGTGCACCAGGCGCGCCTCCTCTCAA
GACCCGGCGGTGATGGACGACGATACGGACGAGGAAGAGACAGGGGAAGG
GGGGGTGGCGGACGTGCAGCAACAGCAGCAGCAGCGTAGCGAAGAACAAG
AGCAGGGCGACGTCTCGACGGCCGCGCTGCTGTCCGCCAAGATTGCGGAC
CTCACGCTCTCCGCCGACCCGGCGGGCCTCGCCGGGGCGAACCCGGACGG
CATGATGCCGCCGACGCCCCTGCCGGACACCCGAGGAGCGGTGGGGGGGT
TACAGCTGGCGGCCCCGGGGGTGCTGCGGCAAGGACCGCCGCTTTTCGGA
GCGGCAGCCGAGCCGCGCGCTTCTACTTGGGGTGCTGGTGGTGGTGCAAC
AACACCGTCGGCAGGCGTTGCTGCCGCGGTAGAGGGGGGTCGCCTGGGGG
GGTCGGCGGTGGAGACTGTCGTCGGGACATACCCTCAGCAAAGGAGCGGG
CTGAATCTGACCCCTCCGCCGTGGGAAGGCAGCGAGAAGCGAAACGACTT
TGTTCCGTCGGTGCCCTCTCTCGCTATCGGGGCTTCCGCGCCCTCGAAGG
GCGTTTCTCCTCCCTCTCTTGCCTCCCCGGAAGAGTCGTCTGCCCCTGCC
CCTCCCCCTGCCGACGCTTTTGACGCTGACGCCGCTTCTCGTGCTCCCGT
TGAGACGAAGAGCTCAGAGTTGGAGCCGGATAGACCACCCCTGTCCAGCG
GTGGCGGTGGGTCAGGTAGCGACGAGAGAGACGGCGTGTCTGGCGGTTCG
CTGTTTCCGGAGGAGATAGTCCCTCAAGAGGAGACGAGTGCCACGATGAC
GCAAGAAGGTACGGCGTCGGCGTTGTCAACCGATGAGGTGGACTTGGACT
TGGCGGGAAATGACGGCCGGGGGAAAGCGGAGAAGGAGGGGGTAGGGGCA
GGAGAGAGCGAGGATGACGTGGGGGGAAAGTCGGCGCCTCCACCTTCGCC
GGCGGATTTACCTGGCAGCGTCAGCGCGGGGTGCTGTGAGGGCGGGGATG
GCGCTGGCGTCGCTAGAACTTACACTGCTGGAGAGATGGAGGCGCCCGGG
GTTGCTGCTGGTGCTAGTCCCGAGCAGCCCGTGTCTTCAGAAAGAGCGAC
GGCATTGGGAGGAGAGGCTGCTGCTGCTGCTGCTGCTGCTGAGCCTACGG
TAACAGTGGCAGAGGCGACGGCAACGCGGGGGGAAGCGGATGGGTCGCCG
TCTTCAGCAGCAGTGGCGGCATGGGGAGGAGGAGGAGGAGGAGGAGAACC
TGCTGAGGACGAAGGTGCTGTGCAAGCAAAGGGCGAGGCGGTGGTCGCAG
CTCCCGGTTTCAGCAGCAGTGAGGATGACGGTAGCCTCAGGTGTGATCCA
GAAACGCCGACAGGTTCTGCGCCGGCGACTGGGGACGCGGTAGCAGAGAG
AAAAGCGGAAGGATTTGCTGCGATACACGGGCGACAGGATTCCGGCGTCA
TCGAACACAAGTCTGTCGAGCCTGGAGGCGGGAGTAAAGAGGACTTGGGG
GATGATGCAGGGCGAGCATGGAGTAAGGAGTAAAGTAGCATTTGTTTTTT
CCTGGGGCGTTTATTTTGTGCACATTTTTCGGGCCCTCTTGTGGGCCCAA
GCCGTTGTTTTTGCCGGGTATTGGCTTGCAAATATCTGTGTTTGGATGAG
ACGGCATACCATGCTGAGGTTACACGTACGTGTTCGCCGAATTGTAGGCT
TGGTCGAATGGAGCATAAAATTTTACCACGTGTTTGGCACCTTGTTGTTT
TTTATTGTTTCGCGGAGAAACCAGGGCACTCCCGGAGTTTATTCCCGCCT
TGTTTTTAGTATTGTATTCATAGCGGCAGCCGCCAAGTTTTTCGCTGAGT
GCGCGCGGCATCTTTTTATTTTTCGACAGGGGGGTTTGAGCCTGTGCTCT
TGATATGATAGGCAGCGAACCACGCCAATCCCTTGTGTCATGTTTTGTTC
TTGCGTTGACATATATACACATGCGCGCGTTTTTGTTGATGGTGGTGGCC
AACGGGTGTATCGCAAAATGTCCCGAGTCACGAAGACAACGGGTATATCA
CGAAGTTAGAGACAAGACAGACGTTGAGCCGCGCGGTCCCGATTGGTGGC
TGACGTCACTCACCGGTCAGGGACTTTGTCCAATCAGAAGTCAGCGGCGC
CATCGTTGACCATTGATAAAACTGCGGGCGCCGCCGCGTTCGTTCGTTCG
TTCGTTCGTTCTTGTGATGCTTTTGTGGCGCGATCACATGGTATATATTA
TGCTGATGATGAGAAGACGGATGGATTTGATGTCGATGTATCGTGTCATC
TTCTTCGTGCTTCGATTCGTGTGTTGCGTTTTTTTTTTTTTTCAGTTCAC
ACCTCCGCGCGCAGTAATTGCGAAAGAGGATGAAAGGTGGAAGGTCTGCG
TGTTAACCTCCTGCAGCATGTGGTTCCAAAGAGAAATACGGCGAGGTTTG
ACACCGTTTCTCTGTGAAATGCGGTGTTATTTACGGTGGTTGCACCGCTT
CTTAGAATGGTCCGAAAACAAACCCTGGTAAGGACTTTTGTGACACAAAG
TTCGGCGTATTCTTCACTCTGGGCATTTGGAGGCCATCTTTCATGAGCGA
TATTGATCTGCCACTTTGCTTTCGAGGACTTTCGTGACACAAAGTTCCGC
GTATTCTTCGCTCTAGGCATCTGGAAGCCATCTTTCATGAGCGATCTTAG
TCTGCCATTTTGCTTTCGAGGACAGGTGTTTATATCATCGCAAAAAACGA
AGAACCAGAGCGGGGTTTGTGTGTCTTGTTGGCGTTCTCTTTGCGAAAAA
TCCCATGACAAACCTTTACTTAGTACCTGATACCTCTGAGGTTCGTCCCG
ATTGAGCGGGGTCTGTTTTTTTCTGTTTTACGCTCCGATAAAATGATCTT
TGTTTAGATCTGGTGGGTTCTGAACTCTCTCCGCTTTTACCCCTAGGTAG
CCAAATGTCGCCATTTTGGGTCGC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig176:432394..435567+

>mRNA_P-littoralis_Contig176.114.1 ID=mRNA_P-littoralis_Contig176.114.1|Name=mRNA_P-littoralis_Contig176.114.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1677bp|location=Sequence derived from alignment at P-littoralis_Contig176:432394..435567+ (Pylaiella littoralis U1_48)
ATGTTCGGGATGCAGGCGGCTGCCGTGGGGACTGCCGAGCAGGCGAGAGG
GGGCGGCGAGGAGGAAGCGCGTCATCAGCATCATCGTCATCAGGATGATC
CTCGTCCTGCGGTGCCCCCGTGCACCAGGCGCGCCTCCTCTCAAGACCCG
GCGGTGATGGACGACGATACGGACGAGGAAGAGACAGGGGAAGGGGGGGT
GGCGGACGTGCAGCAACAGCAGCAGCAGCGTAGCGAAGAACAAGAGCAGG
GCGACGTCTCGACGGCCGCGCTGCTGTCCGCCAAGATTGCGGACCTCACG
CTCTCCGCCGACCCGGCGGGCCTCGCCGGGGCGAACCCGGACGGCATGAT
GCCGCCGACGCCCCTGCCGGACACCCGAGGAGCGGTGGGGGGGTTACAGC
TGGCGGCCCCGGGGGTGCTGCGGCAAGGACCGCCGCTTTTCGGAGCGGCA
GCCGAGCCGCGCGCTTCTACTTGGGGTGCTGGTGGTGGTGCAACAACACC
GTCGGCAGGCGTTGCTGCCGCGGTAGAGGGGGGTCGCCTGGGGGGGTCGG
CGGTGGAGACTGTCGTCGGGACATACCCTCAGCAAAGGAGCGGGCTGAAT
CTGACCCCTCCGCCGTGGGAAGGCAGCGAGAAGCGAAACGACTTTGTTCC
GTCGGTGCCCTCTCTCGCTATCGGGGCTTCCGCGCCCTCGAAGGGCGTTT
CTCCTCCCTCTCTTGCCTCCCCGGAAGAGTCGTCTGCCCCTGCCCCTCCC
CCTGCCGACGCTTTTGACGCTGACGCCGCTTCTCGTGCTCCCGTTGAGAC
GAAGAGCTCAGAGTTGGAGCCGGATAGACCACCCCTGTCCAGCGGTGGCG
GTGGGTCAGGTAGCGACGAGAGAGACGGCGTGTCTGGCGGTTCGCTGTTT
CCGGAGGAGATAGTCCCTCAAGAGGAGACGAGTGCCACGATGACGCAAGA
AGGTACGGCGTCGGCGTTGTCAACCGATGAGGTGGACTTGGACTTGGCGG
GAAATGACGGCCGGGGGAAAGCGGAGAAGGAGGGGGTAGGGGCAGGAGAG
AGCGAGGATGACGTGGGGGGAAAGTCGGCGCCTCCACCTTCGCCGGCGGA
TTTACCTGGCAGCGTCAGCGCGGGGTGCTGTGAGGGCGGGGATGGCGCTG
GCGTCGCTAGAACTTACACTGCTGGAGAGATGGAGGCGCCCGGGGTTGCT
GCTGGTGCTAGTCCCGAGCAGCCCGTGTCTTCAGAAAGAGCGACGGCATT
GGGAGGAGAGGCTGCTGCTGCTGCTGCTGCTGCTGAGCCTACGGTAACAG
TGGCAGAGGCGACGGCAACGCGGGGGGAAGCGGATGGGTCGCCGTCTTCA
GCAGCAGTGGCGGCATGGGGAGGAGGAGGAGGAGGAGGAGAACCTGCTGA
GGACGAAGGTGCTGTGCAAGCAAAGGGCGAGGCGGTGGTCGCAGCTCCCG
GTTTCAGCAGCAGTGAGGATGACGGTAGCCTCAGGTGTGATCCAGAAACG
CCGACAGGTTCTGCGCCGGCGACTGGGGACGCGGTAGCAGAGAGAAAAGC
GGAAGGATTTGCTGCGATACACGGGCGACAGGATTCCGGCGTCATCGAAC
ACAAGTCTGTCGAGCCTGGAGGCGGGAGTAAAGAGGACTTGGGGGATGAT
GCAGGGCGAGCATGGAGTAAGGAGTAA
back to top