mRNA_P-littoralis_Contig176.31.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig176.31.1
Unique NamemRNA_P-littoralis_Contig176.31.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig176.31.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig176contigP-littoralis_Contig176:132587..133369 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size783
Hectar predicted targeting categoryother localisation
Exons1
Cds size513
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789845.3600597-UTR-P-littoralis_Contig176:132586..1327711680789845.3600597-UTR-P-littoralis_Contig176:132586..132771Pylaiella littoralis U1_48UTRP-littoralis_Contig176 132587..132771 +
1680789845.3850522-UTR-P-littoralis_Contig176:133284..1333691680789845.3850522-UTR-P-littoralis_Contig176:133284..133369Pylaiella littoralis U1_48UTRP-littoralis_Contig176 133285..133369 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789845.3760371-CDS-P-littoralis_Contig176:132771..1332841680789845.3760371-CDS-P-littoralis_Contig176:132771..133284Pylaiella littoralis U1_48CDSP-littoralis_Contig176 132772..133284 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig176.31.1prot_P-littoralis_Contig176.31.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig176 132772..133284 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig176.31.1

>prot_P-littoralis_Contig176.31.1 ID=prot_P-littoralis_Contig176.31.1|Name=mRNA_P-littoralis_Contig176.31.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=171bp
MVVPVIVQCLSHWLLGWRIKFVVGRACHLAGRKKAKHDTLIAQRVLLSSS
SIFYTCKETAHVMSDIEISSHLCWLMVDPRMILMLSTRLAVISYDPIVSK
TDVESSVLVDGRSQNNAYAEHQTGRDIIILQLSPKRAMERRKDGYCRFAR
RQQAKNLCISVSAIFSNRNI*
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mRNA from alignment at P-littoralis_Contig176:132587..133369+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig176.31.1 ID=mRNA_P-littoralis_Contig176.31.1|Name=mRNA_P-littoralis_Contig176.31.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=783bp|location=Sequence derived from alignment at P-littoralis_Contig176:132587..133369+ (Pylaiella littoralis U1_48)
ACCACGTTCCGTGGCTCTCTAGGGGGCAGGAACACGGGCGGCAGCGCCAA
CCCGTCGTCCTCGTCGTCCGCTTGCAGAACAAGGTACACACCGCTGATCG
ATGCCGCATGTATTCCGCATCCTTTGACATTTTGCTCCGTATAAAATAAT
GATGGTAGACTAACGCTTTCTTCCATCGCAACGCGATGGTGGTACCTGTA
ATAGTGCAATGCCTTTCGCATTGGTTGCTCGGATGGCGCATAAAGTTCGT
GGTTGGACGTGCATGCCATCTAGCTGGCCGCAAAAAAGCGAAACATGATA
CATTAATTGCACAACGAGTGTTGTTGTCCAGCAGTAGCATCTTTTACACA
TGCAAAGAGACGGCACACGTCATGTCGGATATCGAGATATCGAGTCATCT
GTGTTGGCTGATGGTCGATCCTAGAATGATACTTATGCTGAGCACCAGAC
TGGCCGTGATATCATATGATCCAATTGTCTCCAAAACAGATGTCGAGTCG
TCTGTGTTGGTTGATGGTCGATCCCAGAATAATGCCTACGCTGAGCACCA
GACCGGCCGTGATATCATAATACTCCAATTGTCTCCAAAACGGGCGATGG
AAAGACGGAAAGATGGTTACTGCCGGTTTGCACGGAGACAACAGGCGAAA
AACTTGTGTATTTCCGTGAGCGCCATCTTCTCAAATCGAAATATATAAGC
TCGTCACCAGCAAGTCCTCCGACAGCCAGCCGGACACCTCCTTTTTGCTA
CTGGAACGAGCCACGACGTCAGCCGCGTCCGAT
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Coding sequence (CDS) from alignment at P-littoralis_Contig176:132587..133369+

>mRNA_P-littoralis_Contig176.31.1 ID=mRNA_P-littoralis_Contig176.31.1|Name=mRNA_P-littoralis_Contig176.31.1|organism=Pylaiella littoralis U1_48|type=CDS|length=513bp|location=Sequence derived from alignment at P-littoralis_Contig176:132587..133369+ (Pylaiella littoralis U1_48)
ATGGTGGTACCTGTAATAGTGCAATGCCTTTCGCATTGGTTGCTCGGATG
GCGCATAAAGTTCGTGGTTGGACGTGCATGCCATCTAGCTGGCCGCAAAA
AAGCGAAACATGATACATTAATTGCACAACGAGTGTTGTTGTCCAGCAGT
AGCATCTTTTACACATGCAAAGAGACGGCACACGTCATGTCGGATATCGA
GATATCGAGTCATCTGTGTTGGCTGATGGTCGATCCTAGAATGATACTTA
TGCTGAGCACCAGACTGGCCGTGATATCATATGATCCAATTGTCTCCAAA
ACAGATGTCGAGTCGTCTGTGTTGGTTGATGGTCGATCCCAGAATAATGC
CTACGCTGAGCACCAGACCGGCCGTGATATCATAATACTCCAATTGTCTC
CAAAACGGGCGATGGAAAGACGGAAAGATGGTTACTGCCGGTTTGCACGG
AGACAACAGGCGAAAAACTTGTGTATTTCCGTGAGCGCCATCTTCTCAAA
TCGAAATATATAA
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