mRNA_P-littoralis_Contig176.119.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig176.119.1
Unique NamemRNA_P-littoralis_Contig176.119.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig176.119.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig176contigP-littoralis_Contig176:443091..444145 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size308
Hectar predicted targeting categorysignal peptide
Exons2
Cds size210
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789845.252866-UTR-P-littoralis_Contig176:443090..4430961680789845.252866-UTR-P-littoralis_Contig176:443090..443096Pylaiella littoralis U1_48UTRP-littoralis_Contig176 443091..443096 +
1680789845.2836983-UTR-P-littoralis_Contig176:444053..4441451680789845.2836983-UTR-P-littoralis_Contig176:444053..444145Pylaiella littoralis U1_48UTRP-littoralis_Contig176 444054..444145 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789845.265833-CDS-P-littoralis_Contig176:443096..4431571680789845.265833-CDS-P-littoralis_Contig176:443096..443157Pylaiella littoralis U1_48CDSP-littoralis_Contig176 443097..443157 +
1680789845.2746246-CDS-P-littoralis_Contig176:443904..4440531680789845.2746246-CDS-P-littoralis_Contig176:443904..444053Pylaiella littoralis U1_48CDSP-littoralis_Contig176 443905..444053 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig176.119.1prot_P-littoralis_Contig176.119.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig176 443097..444053 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig176.119.1

>prot_P-littoralis_Contig176.119.1 ID=prot_P-littoralis_Contig176.119.1|Name=mRNA_P-littoralis_Contig176.119.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=70bp
MRLPGVTGVIWASSIIAAPEASGAGPILDTCTPLDIVSLLGAQLTQDGWC
TCASVEQDLGLDENAVSSS*
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mRNA from alignment at P-littoralis_Contig176:443091..444145+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig176.119.1 ID=mRNA_P-littoralis_Contig176.119.1|Name=mRNA_P-littoralis_Contig176.119.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1055bp|location=Sequence derived from alignment at P-littoralis_Contig176:443091..444145+ (Pylaiella littoralis U1_48)
CAAACGATGCGTCTGCCTGGGGTCACCGGAGTGATCTGGGCCAGCTCCAT
CATCGCTGCCCCAGAAGGTACGACGTTCGACTATAATGGAGATTGTGTTG
AAAGATGACGACGCTGCAAGTTTCGTGTGTTTTGGTTGGCTGTTTGTCGA
AGTCTGGCGGCGGCGTGTTTTGGGCGCCGACCACATACCTTCAACAACAG
CAGGAGGCCGCTAATAGAACCCACCTCGGCATTCGCACCCCACAGATCGA
AAGTTCTACATGTTATTCGAGTATGTCCATTGCCATGTGTTCCAGATGGG
CTACGAACTGTGCCCGACCTCAATCGGTTCACAACAAGTTGAGAAATGTT
CTAAAATGTGTTAAAATAACAGCTCGTGGATCAGCTGTCATTCTGGAGGG
GACAATGACCCGAGGCACAGCAGCCAGTGCCTCACAAGGCAAAGCACTTC
CGGAGGACCGGGAAAGTTTCACTCATAGTTAGTCATGGTAGTTGGCCTGT
GAATGACGGTGGAATTGATGTTGTACATGGACTACAGCAGGAGAAAACCG
TTTTTATTGTACGGGTCGTAGTTGAGGGTCAGCTCCCACCTTGCCGTGAC
CCCATGACAAGGTCTCTATCGTGCATAGTGCTGTTCTCTTTGGCTTCGAT
ATGTACCAGGGCGTAGGAGCACTTAAAAGATAGCTGAGACCAAGGAGAAG
CACAAACAAAAAAAACATTGGGAGGGTACGAATTGGGCACAGTTCAAAAA
CATCGATACCGCAAAGCCTAAAATGCCCCTAAAACGATGTTATTGTACCG
TTTTTACTACACAGCCAGCGGAGCGGGGCCCATCTTGGACACCTGCACAC
CACTGGACATCGTCTCTTTGCTGGGCGCCCAACTGACCCAAGATGGTTGG
TGTACGTGCGCAAGCGTCGAGCAAGATCTAGGCCTTGATGAAAACGCTGT
ATCCAGCTCATGACGCATTGCATGTGCCGGAGTAAAAGTAAAACAACTCT
CGAAGGACCTGTGGGACAGACTAGGGAAAAAAGGAGTGTATCGATGCCTT
GGTTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig176:443091..444145+

>mRNA_P-littoralis_Contig176.119.1 ID=mRNA_P-littoralis_Contig176.119.1|Name=mRNA_P-littoralis_Contig176.119.1|organism=Pylaiella littoralis U1_48|type=CDS|length=210bp|location=Sequence derived from alignment at P-littoralis_Contig176:443091..444145+ (Pylaiella littoralis U1_48)
ATGCGTCTGCCTGGGGTCACCGGAGTGATCTGGGCCAGCTCCATCATCGC
TGCCCCAGAAGCCAGCGGAGCGGGGCCCATCTTGGACACCTGCACACCAC
TGGACATCGTCTCTTTGCTGGGCGCCCAACTGACCCAAGATGGTTGGTGT
ACGTGCGCAAGCGTCGAGCAAGATCTAGGCCTTGATGAAAACGCTGTATC
CAGCTCATGA
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