mRNA_P-littoralis_Contig176.102.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig176.102.1
Unique NamemRNA_P-littoralis_Contig176.102.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig176.102.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig176contigP-littoralis_Contig176:321301..322753 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size261
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size147
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789845.198216-UTR-P-littoralis_Contig176:321300..3214141680789845.198216-UTR-P-littoralis_Contig176:321300..321414Pylaiella littoralis U1_48UTRP-littoralis_Contig176 321301..321414 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789845.2121012-CDS-P-littoralis_Contig176:321414..3215311680789845.2121012-CDS-P-littoralis_Contig176:321414..321531Pylaiella littoralis U1_48CDSP-littoralis_Contig176 321415..321531 -
1680789845.2221847-CDS-P-littoralis_Contig176:322723..3227531680789845.2221847-CDS-P-littoralis_Contig176:322723..322753Pylaiella littoralis U1_48CDSP-littoralis_Contig176 322724..322753 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig176.102.1prot_P-littoralis_Contig176.102.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig176 321415..322753 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig176.102.1

>prot_P-littoralis_Contig176.102.1 ID=prot_P-littoralis_Contig176.102.1|Name=mRNA_P-littoralis_Contig176.102.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=49bp
LLCAWLEDSQTTLGATGSKGTRRAARHQKEPKIAGRAGYRKHRGSWEA*
back to top

mRNA from alignment at P-littoralis_Contig176:321301..322753-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig176.102.1 ID=mRNA_P-littoralis_Contig176.102.1|Name=mRNA_P-littoralis_Contig176.102.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1453bp|location=Sequence derived from alignment at P-littoralis_Contig176:321301..322753- (Pylaiella littoralis U1_48)
CTGCTTTGTGCCTGGTTGGAGGACTCTCAGGTGAGACGTAGTTCGAGCCG
ATGCGCTTCACGACAGAAGTACTGGTACTGCTGCTCGAACTAGCTTAAAC
CATCTCACATACCTGCTGCTAAATACATAATCTCCACCCACCTCAATGAC
CGCCTTTCGAGGCATAGCATACCGACATTAACAGGTGTTGTGGGCTTGCG
ACGGCAACACCGTCGGCAAATATCCGGGTTACGTTCGGTACAAGTATACC
GTACGGGAAAATGCAGCGAAGAGGGCGGCATGGGTGCTCTGTTGTAGGGA
CTTCCATCACAAGTGGACGATGAAGTACCTTGTGGCACTTTGTGGATTCT
ACACAAAGTGGCCACTTTGCAGGAAAATAGACAATGACGGCGACGAGGGG
AATTTTCTCCAGCGGTTGCGCAGTGTACACAAGCGCACCTTGGATGAGGC
TTCGCAACGTGTTTTTTCGCCTAATGCCTTTTTGCGTCTCCCACGTCTTA
CGGCACCGAGGAGTCACCGTGCACGCCGTACAAAAGAGAACGATTAAGAA
TGGCCTGTTCAGTCTAATATTTCGAATCTATAGGCAGTTTAGTCAAACAA
GCACAACGATACAAGTATGTCTTGAAACGTTTCGAAGGAAGACCGAATCC
TCGTATTTGGTACTCCGAAGTATATGGGGACATTTTGTCACTGTTGATTT
GCTTTTCAACAGTTCGAAAATGACTGTCTGAATATTTGTTCTTCATCCTG
TCGTTCAATCGACGCCTGTACCGACGTCTACCGTTTCATCTGTGACACCC
GTAAAGTTGCAATGCGCCATTCCGAGAGAACCGTCGTTATTGTTTGTTGA
GTCATTGGCGAAACTTGGTCGAAGGTCAACGGACGAGAACAACGGTTAGG
GTTCGGCGGTCCGAGGCCGGGGTCAAGTGGCACTGTTTCCTTTTAACCGC
AGCAGAGCTATTTGTTGCACGGTCCAGAGTTACCTTACTCCGTCAAGTCT
CGATGCGCGCATACAAAATGAGAAAAAAAGAACCATTGGAAGCATTGATG
ATTGCCAAAGGGGACGAGTTGTTGTACGGGGGTGAATGACCGAGCAAGAT
GGACTCTCGAGGCGAATGCGGCCAATCCGAGTCTGAAATTGCTGCACGGG
GTACCCCTCACAAGAACCCTATCGCCGACCCGTGATGCCCTTGGTGCACA
ACAATTACGCGAAGGTCAGCAGACGACGCTCGGTGCGACTGGCTCCAAAG
GTACTAGGAGAGCCGCCAGACACCAGAAGGAACCGAAGATAGCCGGGAGA
GCTGGGTATAGGAAACACAGGGGGTCGTGGGAAGCTTGAAACTGCCACCG
TTCCGCCCGTGGTCGAAGAGGGAAACGGAAAGCAGGCCGATCTCGAAACG
TTGCGACCAATTACTCTCTTTTTTACCACTAAATTTACAGTCCAACACCT
CGC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig176:321301..322753-

>mRNA_P-littoralis_Contig176.102.1 ID=mRNA_P-littoralis_Contig176.102.1|Name=mRNA_P-littoralis_Contig176.102.1|organism=Pylaiella littoralis U1_48|type=CDS|length=147bp|location=Sequence derived from alignment at P-littoralis_Contig176:321301..322753- (Pylaiella littoralis U1_48)
CTGCTTTGTGCCTGGTTGGAGGACTCTCAGACGACGCTCGGTGCGACTGG
CTCCAAAGGTACTAGGAGAGCCGCCAGACACCAGAAGGAACCGAAGATAG
CCGGGAGAGCTGGGTATAGGAAACACAGGGGGTCGTGGGAAGCTTGA
back to top