mRNA_P-littoralis_Contig176.91.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig176.91.1
Unique NamemRNA_P-littoralis_Contig176.91.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig176.91.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig176contigP-littoralis_Contig176:259485..259853 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size217
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size138
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789845.1343455-UTR-P-littoralis_Contig176:259484..2595221680789845.1343455-UTR-P-littoralis_Contig176:259484..259522Pylaiella littoralis U1_48UTRP-littoralis_Contig176 259485..259522 -
1680789845.167647-UTR-P-littoralis_Contig176:259812..2598531680789845.167647-UTR-P-littoralis_Contig176:259812..259853Pylaiella littoralis U1_48UTRP-littoralis_Contig176 259813..259853 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789845.146699-CDS-P-littoralis_Contig176:259522..2596281680789845.146699-CDS-P-littoralis_Contig176:259522..259628Pylaiella littoralis U1_48CDSP-littoralis_Contig176 259523..259628 -
1680789845.1569128-CDS-P-littoralis_Contig176:259780..2598121680789845.1569128-CDS-P-littoralis_Contig176:259780..259812Pylaiella littoralis U1_48CDSP-littoralis_Contig176 259781..259812 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig176.91.1prot_P-littoralis_Contig176.91.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig176 259523..259812 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig176.91.1

>prot_P-littoralis_Contig176.91.1 ID=prot_P-littoralis_Contig176.91.1|Name=mRNA_P-littoralis_Contig176.91.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=46bp
MEVILQRQSKVCSKIRDNIEEPIIRSRIHHYRKSGLGAHAFNCSI*
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mRNA from alignment at P-littoralis_Contig176:259485..259853-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig176.91.1 ID=mRNA_P-littoralis_Contig176.91.1|Name=mRNA_P-littoralis_Contig176.91.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=369bp|location=Sequence derived from alignment at P-littoralis_Contig176:259485..259853- (Pylaiella littoralis U1_48)
GGGAGTGGATTCACCCGCAGAGGATAGCGACGACCGCGCGCATGGAGGTG
ATTCTCCAACGCCAATCCAAGGTACCTTTGGCTATTTTGCAAAACACACT
ACGGGTTCTGACCCTTGAACGTCTGCAGTGGTTGCCGTTGTTTGTCACAT
GCTAAAACAAAAATATGACTCCCTGTCCCTGCTCGGTACCTTGTTCCATC
GCGAACGTCGTCCATGGCCACATATTTGTTCAAAGATTCGTGATAATATT
GAAGAACCCATAATCCGGAGTAGGATTCACCATTACAGAAAATCAGGCCT
TGGAGCTCATGCGTTCAACTGTTCGATCTGATTCAAGGTCACCCGGATGA
ATTGGACGATGACAACCTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig176:259485..259853-

>mRNA_P-littoralis_Contig176.91.1 ID=mRNA_P-littoralis_Contig176.91.1|Name=mRNA_P-littoralis_Contig176.91.1|organism=Pylaiella littoralis U1_48|type=CDS|length=138bp|location=Sequence derived from alignment at P-littoralis_Contig176:259485..259853- (Pylaiella littoralis U1_48)
ATGGAGGTGATTCTCCAACGCCAATCCAAGGTTTGTTCAAAGATTCGTGA
TAATATTGAAGAACCCATAATCCGGAGTAGGATTCACCATTACAGAAAAT
CAGGCCTTGGAGCTCATGCGTTCAACTGTTCGATCTGA
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