mRNA_P-littoralis_Contig176.78.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig176.78.1
Unique NamemRNA_P-littoralis_Contig176.78.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig176.78.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig176contigP-littoralis_Contig176:237625..237902 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size240
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size141
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789845.0310626-UTR-P-littoralis_Contig176:237624..2376521680789845.0310626-UTR-P-littoralis_Contig176:237624..237652Pylaiella littoralis U1_48UTRP-littoralis_Contig176 237625..237652 +
1680789845.0565484-UTR-P-littoralis_Contig176:237831..2379021680789845.0565484-UTR-P-littoralis_Contig176:237831..237902Pylaiella littoralis U1_48UTRP-littoralis_Contig176 237832..237902 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789845.040139-CDS-P-littoralis_Contig176:237652..2377751680789845.040139-CDS-P-littoralis_Contig176:237652..237775Pylaiella littoralis U1_48CDSP-littoralis_Contig176 237653..237775 +
1680789845.048335-CDS-P-littoralis_Contig176:237813..2378311680789845.048335-CDS-P-littoralis_Contig176:237813..237831Pylaiella littoralis U1_48CDSP-littoralis_Contig176 237814..237831 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig176.78.1prot_P-littoralis_Contig176.78.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig176 237653..237831 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig176.78.1

>prot_P-littoralis_Contig176.78.1 ID=prot_P-littoralis_Contig176.78.1|Name=mRNA_P-littoralis_Contig176.78.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=47bp
MRRQTSYFSTFFSFFWSLHYVPNSHFSVLHGTFLTTRNATMLFSYE*
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mRNA from alignment at P-littoralis_Contig176:237625..237902+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig176.78.1 ID=mRNA_P-littoralis_Contig176.78.1|Name=mRNA_P-littoralis_Contig176.78.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=278bp|location=Sequence derived from alignment at P-littoralis_Contig176:237625..237902+ (Pylaiella littoralis U1_48)
GCATAGCACATTCTTGACAACACGGAAAATGCGACGACAGACAAGTTATT
TTTCTACTTTTTTTTCTTTCTTCTGGTCTCTTCATTACGTGCCAAACAGC
CACTTTAGTGTACTGCATGGCACATTCTTGACAACAAGGAATGCGACGAT
GGTATCATTTTTTTTAATATTATTCTTGATCGTTCAAAGTTGTTTTCGTA
TGAATGACGCAGCAGTATTGCATATTACATTCCTCATGGCGTTCCATATG
TGCCAAACAGCCACTTGCGTGTACTGCA
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Coding sequence (CDS) from alignment at P-littoralis_Contig176:237625..237902+

>mRNA_P-littoralis_Contig176.78.1 ID=mRNA_P-littoralis_Contig176.78.1|Name=mRNA_P-littoralis_Contig176.78.1|organism=Pylaiella littoralis U1_48|type=CDS|length=141bp|location=Sequence derived from alignment at P-littoralis_Contig176:237625..237902+ (Pylaiella littoralis U1_48)
ATGCGACGACAGACAAGTTATTTTTCTACTTTTTTTTCTTTCTTCTGGTC
TCTTCATTACGTGCCAAACAGCCACTTTAGTGTACTGCATGGCACATTCT
TGACAACAAGGAATGCGACGATGTTGTTTTCGTATGAATGA
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