mRNA_P-littoralis_Contig175.92.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig175.92.1
Unique NamemRNA_P-littoralis_Contig175.92.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig175.92.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig175contigP-littoralis_Contig175:445485..448283 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size382
Hectar predicted targeting categoryother localisation
Exons3
Cds size231
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789844.9687512-UTR-P-littoralis_Contig175:445484..4456251680789844.9687512-UTR-P-littoralis_Contig175:445484..445625Pylaiella littoralis U1_48UTRP-littoralis_Contig175 445485..445625 +
1680789844.9807186-UTR-P-littoralis_Contig175:447849..4478591680789844.9807186-UTR-P-littoralis_Contig175:447849..447859Pylaiella littoralis U1_48UTRP-littoralis_Contig175 447850..447859 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789844.992226-CDS-P-littoralis_Contig175:447859..4479701680789844.992226-CDS-P-littoralis_Contig175:447859..447970Pylaiella littoralis U1_48CDSP-littoralis_Contig175 447860..447970 +
1680789845.0021276-CDS-P-littoralis_Contig175:448163..4482831680789845.0021276-CDS-P-littoralis_Contig175:448163..448283Pylaiella littoralis U1_48CDSP-littoralis_Contig175 448164..448283 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig175.92.1prot_P-littoralis_Contig175.92.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig175 447860..448283 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig175.92.1

>prot_P-littoralis_Contig175.92.1 ID=prot_P-littoralis_Contig175.92.1|Name=mRNA_P-littoralis_Contig175.92.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=77bp
MLSTPEKDEGGPRTRSHTTPTTSDRALESDRCAPRPRVWTPASIATLEFG
FLCWDEPNSLTSMLPVCLWLKHHKRSG
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mRNA from alignment at P-littoralis_Contig175:445485..448283+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig175.92.1 ID=mRNA_P-littoralis_Contig175.92.1|Name=mRNA_P-littoralis_Contig175.92.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2799bp|location=Sequence derived from alignment at P-littoralis_Contig175:445485..448283+ (Pylaiella littoralis U1_48)
CCCGCTGCTGCCCACTTCCATCACGCTCGCACGCGACCAAGCACGCGACG
ACCGCGACGCCAACTTCTGATCTACCTGCTGTACGCGCTACCATCAGTAC
GAGTGAGACTCTGTGCCAGGGCAGAGTTTTGTTTTTTCACGGTGAGTCTT
GTTGTCATGACCTCCTCAGGGCAGCACCCCGGTGTAGTTCCCTACCGAAT
TCAGACTACCCTCGACGTCGCAGGCACTAGCGTCTCGCCCACCCAGGAGG
TTAGTCTCATACACCCGGTGCCGTCAGTATATGTCTCAGGCTCTCTCGGA
TAGAAGTCCGTTTGGAAATCGGACTTGTGTAGGCAGACTTCTCTCCAAAA
TGCGGACAAGAATCTCACCGTGTCGAGAGGACCCTGAGCGTTCGCCAGAA
GCAGGTTGAAAAACAATGCAGGAAAAATGGAAAATTTATTTTTGAAAAAT
CAACACACAGCCCGTGGCGTGCAATCACCACCGCGCGGTACGCCAGAGCA
CGCCTCGTGCCTGCGGGTGAACAGAAAGTGCTGTGGGTTACCAGAATGCC
GTCGGCTTCAGCTTTGGTGCTGTGTTGTGTATCGGTGACGAGTCACTTTG
TAGCAGGGCATTGTTGGCTAGGTAATCTGTAATCTGTAATCTGTTATCGC
TTCGGCGCCAGAGACAAGACACCATACAGACTTGAACAGACAGATCCTTC
GAGATTATCTCTTCCCACACAAAGCCGTTATCGTCCGTTCACACGCGGGT
GTGCTTGCCCACCACAGGTTTATAGCGTACCTTCGGGACCGCACGCTTCC
CAGTGCTGCGCACCGGTTTAAGGGAGCGCACCGTCCGAACACCGTTCTGG
CTGCTGTGAGGGCCGAAGAAGACACAACATACCAATCTAAAACACCTCAG
CTATAGTGTGCTGTGTTGGCTGTCGAATGAGCCCTGGTTTGTCGAGTTAG
GCGGCCTGTGGCCCTCAAATGTGACGAAAGAAAAAATCGAAGTCCGGCGG
CAAATAGGCTGCAGTTTTGTGCGGCGCAACCTCTCGCGGGTGCAGAGGCT
GCATTTCACCCGAGTACGAGAACGCATAGCACACAGCACAGATCCGTACG
AAAGTTGGCACATGGGCTCAACATACAACTAGAGGGTAGTTTGCAAGAAG
ACGCGCACCAATACGCGCTGTGGCGCACGAACGCGGCGCTTGCTTGTTAA
AAATAACGTCCGCGCGAAGGCACCATGCTTAGCTTCCTGCAAACGATTCA
GGGAGAGTGCACCGGTTTGAACAAAGGACATTCTGAGGGTTGCTACGCAC
TTCGAATTTTGCGGGAACACCCAGTATAGGCTGAGAACGCGCAATCGGCG
CGCACCAGGTTTGAACTTAAATTTTACGTTCCGCCGACGCACACCGGCTC
TTCATCTTCCGCGCTAAAAAGAAAAACAGATGTACTTCGTGTGTCGCTAG
ACTGATTAGGTTTTTCCGCGGGCGCGCGAATCCACGGCCCCCCGCGAATC
TGCTGGGCCCCTCCTACTTTTTCGCCGGTGCGCAGCACTGTTCCTCGCAA
GCCGTTTCACCAATGTCAGCTGACTGCGGTTCAGGCTTCCGAGCAATTTC
GAATGGGTGTAGACTAGTCTTACACGTGACAAATTCTTCGTCCTGCCTGA
ACTCTTACTCACTGCCGCGAACATCGATTGACTTCTGCGCACACACTCTA
TCATTCGAAGATAACAATATGCGGACCATGACCATTGCTCCCATTCCCTG
TCCTCCACAGCAGTACTTCCTTAAAGAGGCAGCGTCCCACAAGAGGAAAT
GACGTAGAATACCACCCCTCTTGCGCAAATATGAATCTGCCGTGCTCGAT
GTTTCGCGCGCTAGTGGTTTCGTACTTTCCACCACTATTAATAGCTGTTA
ATTTGCTTGCATTATTTGCACCCTTGTTCTGGCGAGTGTTAAAGGCTGTA
TTTCACCTGTTGTTTTTCTCACATTGAAAACCGTTCCGTTCTCTCTATCC
AGTACCTCCAGCTGTCCGTGCTCTTCCAACACTTGCGTCGGGCGATTCCC
GTGGTCACAAGCTAACTACCCTAAGAAAAGGTATTCTAAAATAAAACACA
ATAAAAACGGACCACGGAGCCGAAAGATCAGCAAAGCTGTAGAAAGAAGC
AGCAGAAGCATATTTAAAATATAACTCAACGCATGCCGTGCTCAAGAGGC
GGGGAATGGACGGGGAGTTTGTGCATCTTAGGCCATAGGTATCTCAATGG
CAATCAGGTATAACCTCTTGTCGCGTGAACACATGTGCATGCCTATTCAT
AAAAGCCGATGAATTCCGAATAGTTCCCATTTTTATATCGTTCACACCGC
AACGGCTACCGACAGGCTGCCGTCGATGCTTTCGACGCCGGAGAAGGATG
AGGGAGGGCCGAGGACACGATCGCACACCACGCCCACCACGAGTGATCGT
GCATTGGAGAGCGACCGCTGCGCTCCGAGACCACGAGTAAGCCTACTTCA
CCATAGAGTCCGGGGTGGGGGTGGCGGGAGCATCTCTCCACCGTGAAGTA
ATGTTGTTGAGGAACACACAGAGTTCCTCATAGCTTTTTTAATAGGTGTC
CCGCGTTTCCTTCCCCTGTCGTCCTCCCCACTCCCGCCCCCTCGACCCTC
GTACCTCTGTGTCGTCGTTTTTGATATAGGTGTGGACGCCCGCGTCCATC
GCCACCTTAGAGTTTGGCTTCCTCTGTTGGGATGAACCCAACAGCCTGAC
GAGCATGTTGCCTGTGTGCCTCTGGCTCAAGCACCACAAGCGGTCAGGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig175:445485..448283+

>mRNA_P-littoralis_Contig175.92.1 ID=mRNA_P-littoralis_Contig175.92.1|Name=mRNA_P-littoralis_Contig175.92.1|organism=Pylaiella littoralis U1_48|type=CDS|length=231bp|location=Sequence derived from alignment at P-littoralis_Contig175:445485..448283+ (Pylaiella littoralis U1_48)
ATGCTTTCGACGCCGGAGAAGGATGAGGGAGGGCCGAGGACACGATCGCA
CACCACGCCCACCACGAGTGATCGTGCATTGGAGAGCGACCGCTGCGCTC
CGAGACCACGAGTGTGGACGCCCGCGTCCATCGCCACCTTAGAGTTTGGC
TTCCTCTGTTGGGATGAACCCAACAGCCTGACGAGCATGTTGCCTGTGTG
CCTCTGGCTCAAGCACCACAAGCGGTCAGGC
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