mRNA_P-littoralis_Contig175.34.3 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig175.34.3
Unique NamemRNA_P-littoralis_Contig175.34.3
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig175.34.3 vs. uniprot
Match: D7FVX8_ECTSI (Ubiquinol cytochrome c reductase cytochrome c1 prec (ISS) n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVX8_ECTSI)

HSP 1 Score: 508 bits (1308), Expect = 5.930e-171
Identity = 238/249 (95.58%), Postives = 246/249 (98.80%), Query Frame = 3 
Query:  339 VGGATVLCDDAVHTVEYDWPHTGFLQTFDHAAIRRGWQVYREVCSTCHSIKFVAFRNLIGVSHTEAEVKKLAAEFEVEDGPNDEGEMFERPAKPSDRIPGPYKNEATARAANNGAYPPDLSLVVKGRHLGHHYVMSLLTGYTDAPVGKDLLPGLHYNPYFPGTSISMPPPLMDGQVEYPDGTEATVSQMAKDVTTFLAWCAEPEMDERKRMGMKWCTAMFIGLGLSMYYKRFRWSPLKTRKITYHDIKR 1085
            VGGATVLCDDAVHTVEYDWPH+GFLQTFDHAAIRRGWQVYREVCSTCHSIKFVAFRNLIGVSH+EAEVKK+AAEFEVEDGPNDEGEMFERPAKPSDRIPGPYKNEA+ARAANNGAYPPDLSLVVKGRHLGHHYVMSLLTGYT+APVGKDLLPGLHYNPYFPGTSISMPPPLMDGQVEYPDGT ATVSQM+KDVTTFLAWCAEPEMDERKRMGMKWC+AMF+GL LSMYYKRFRWSPLKTRKITYHDI R
Sbjct:   35 VGGATVLCDDAVHTVEYDWPHSGFLQTFDHAAIRRGWQVYREVCSTCHSIKFVAFRNLIGVSHSEAEVKKIAAEFEVEDGPNDEGEMFERPAKPSDRIPGPYKNEASARAANNGAYPPDLSLVVKGRHLGHHYVMSLLTGYTEAPVGKDLLPGLHYNPYFPGTSISMPPPLMDGQVEYPDGTPATVSQMSKDVTTFLAWCAEPEMDERKRMGMKWCSAMFLGLALSMYYKRFRWSPLKTRKITYHDINR 283
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BLAST of mRNA_P-littoralis_Contig175.34.3 vs. uniprot
Match: A0A835Z587_9STRA (Cytochrome c1 n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z587_9STRA)

HSP 1 Score: 351 bits (900), Expect = 2.010e-110
Identity = 166/248 (66.94%), Postives = 198/248 (79.84%), Query Frame = 3 
Query:  333 AAVGGATVLC-DDAVHTVEYDWPHTGFLQTFDHAAIRRGWQVYREVCSTCHSIKFVAFRNLIGVSHTEAEVKKLAAEFEVEDG-PNDEGEMFERPAKPSDRIPGPYKNEATARAANNGAYPPDLSLVVKGRHLGHHYVMSLLTGYTDAPVGKDLLPGLHYNPYFPGTSISMPPPLMDGQVEYPDGTEATVSQMAKDVTTFLAWCAEPEMDERKRMGMKWCTAMFIGLGLSMYYKRFRWSPLKTRKITY 1070
            AA G    LC DD + ++ Y WP  G L +FDHAAIRRG+QVYR+VCS+CHSI++++FRN +GV+H EA  KKLA EFEV D  PND+GEMFERPAK  DR PGPY+NEA  RAAN GA PPDLSL+ K RH G  YV +LLTGY D+P GKDLLPGL+YNPYF G +I+MPPPLMDGQVEY DGT ATV+QMAKDV+ FLAWCAEPE DERK+ G+K  T + +G+G++ YYKR RW+P+KTRKITY
Sbjct:   23 AAAGAGAALCNDDCIPSLSYGWPQDGALSSFDHAAIRRGFQVYRQVCSSCHSIQYISFRNFVGVTHDEAGAKKLAEEFEVTDAQPNDDGEMFERPAKLFDRYPGPYRNEAEGRAANGGALPPDLSLMTKARHGGIDYVFALLTGYADSPAGKDLLPGLYYNPYFAGGAIAMPPPLMDGQVEYEDGTPATVTQMAKDVSQFLAWCAEPEHDERKKFGVKAVTVLALGIGITAYYKRLRWAPVKTRKITY 270
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BLAST of mRNA_P-littoralis_Contig175.34.3 vs. uniprot
Match: A0A7R9YFS8_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YFS8_9STRA)

HSP 1 Score: 328 bits (842), Expect = 4.880e-102
Identity = 155/246 (63.01%), Postives = 188/246 (76.42%), Query Frame = 3 
Query:  333 AAVGGATVLCDDAVHTVEYDWPHTGFLQTFDHAAIRRGWQVYREVCSTCHSIKFVAFRNLIGVSHTEAEVKKLAAEFEVEDGPNDEGEMFERPAKPSDRIPGPYKNEATARAANNGAYPPDLSLVVKGRHLGHHYVMSLLTGYTDAPVGKDLLPGLHYNPYFPGTSISMPPPLMDGQVEYPDGTEATVSQMAKDVTTFLAWCAEPEMDERKRMGMKWCTAMFIGLGLSMYYKRFRWSPLKTRKITY 1070
            A  GG     DD + ++   W H GF  ++D+ A+RRG+QVY+EVCS+CHS++ +AFRNL+GV  TE + KKLA  +E+ DGPNDEGEMFERP K SD IPGP+ NE  ARAANNGAYPPDLSL+ K R  G  Y+ SLLTGY +AP GK +L GLHYNPYFPG +I+MP  LMDGQVEY DGT AT SQMAKDV TFLAWCAEPE DERK+ G++   A+F+   ++ YYKRFR+SPLKTR+ITY
Sbjct:   17 ATTGGVAFASDDHIPSLNPGWTHNGFFSSYDYKAVRRGFQVYKEVCSSCHSLERIAFRNLVGVCFTEDQAKKLAESYEIVDGPNDEGEMFERPGKLSDYIPGPHANEEAARAANNGAYPPDLSLITKARPGGVDYIFSLLTGYVEAPEGKTMLSGLHYNPYFPGGAIAMPKQLMDGQVEYEDGTPATESQMAKDVATFLAWCAEPEHDERKKAGVRILAALFVAFLITGYYKRFRYSPLKTRQITY 262
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BLAST of mRNA_P-littoralis_Contig175.34.3 vs. uniprot
Match: A0A7S1BBA1_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BBA1_9STRA)

HSP 1 Score: 323 bits (828), Expect = 8.460e-100
Identity = 149/236 (63.14%), Postives = 180/236 (76.27%), Query Frame = 3 
Query:  363 DDAVHTVEYDWPHTGFLQTFDHAAIRRGWQVYREVCSTCHSIKFVAFRNLIGVSHTEAEVKKLAAEFEVEDGPNDEGEMFERPAKPSDRIPGPYKNEATARAANNGAYPPDLSLVVKGRHLGHHYVMSLLTGYTDAPVGKDLLPGLHYNPYFPGTSISMPPPLMDGQVEYPDGTEATVSQMAKDVTTFLAWCAEPEMDERKRMGMKWCTAMFIGLGLSMYYKRFRWSPLKTRKITY 1070
            +  VH   Y W H G L TFDH AIRRG+QVY+EVC+TCHS++ +AFRN +GV+H+  E+K+L AE +VEDGPNDEGEMF+RP K +D++P PY NE   RAAN GAYPPDLSL++K RH G  YV SLL GYT+AP GKD+LPGL+YNPYF G  I+MPPPL DGQ++Y DGT ATVSQMAKDV  FL WCAEPE DERK+ G K    +   L  + +YKRFRWS  KTRK++Y
Sbjct:   40 ESIVHPAHYHWDHAGLLDTFDHKAIRRGYQVYKEVCATCHSVEQIAFRNFVGVTHSTKEMKELTAEIDVEDGPNDEGEMFDRPGKLADKLPSPYANEEAGRAANGGAYPPDLSLMIKARHSGPDYVFSLLAGYTEAPEGKDILPGLYYNPYFDGGLIAMPPPLDDGQLDYEDGTPATVSQMAKDVVIFLNWCAEPEHDERKKEGFKAVLCLAAALVFTGFYKRFRWSIYKTRKLSY 275
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BLAST of mRNA_P-littoralis_Contig175.34.3 vs. uniprot
Match: A0A485LA40_9STRA (Aste57867_18449 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LA40_9STRA)

HSP 1 Score: 320 bits (821), Expect = 7.760e-99
Identity = 152/242 (62.81%), Postives = 182/242 (75.21%), Query Frame = 3 
Query:  345 GATVLCDDAVHTVEYDWPHTGFLQTFDHAAIRRGWQVYREVCSTCHSIKFVAFRNLIGVSHTEAEVKKLAAEFEVEDGPNDEGEMFERPAKPSDRIPGPYKNEATARAANNGAYPPDLSLVVKGRHLGHHYVMSLLTGYTDAPVGKDLLPGLHYNPYFPGTSISMPPPLMDGQVEYPDGTEATVSQMAKDVTTFLAWCAEPEMDERKRMGMKWCTAMFIGLGLSMYYKRFRWSPLKTRKITY 1070
            G T   DD +    Y + H G    FD AA+RRG+QVY+EVCSTCHS+  + FR+L+GV+HTE E K LAA+ +V DGPNDEGEMFERP K SD +P PY N+  A AANNGA PPDLSL+VK RH G  Y+ +L+TGY DAP GKD+  GLHYNPYF G +I+MP PL DG+VEY DGT ATVSQMAKDV+ FL+W AEPE DERK+MGM+WC  +F+   L+ YYKR RW+PLKTRKI Y
Sbjct:   30 GVTSFSDDCIPAQHYGFEHQGPFTAFDAAAVRRGYQVYKEVCSTCHSVDKIHFRHLVGVTHTEDEAKALAADIDVVDGPNDEGEMFERPGKLSDPLPKPYANDEAASAANNGAIPPDLSLIVKARHAGADYLFALMTGYIDAPEGKDVGAGLHYNPYFGGGAIAMPAPLEDGKVEYEDGTPATVSQMAKDVSVFLSWAAEPEHDERKKMGMQWCFGLFVTALLTGYYKRMRWAPLKTRKIEY 271
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BLAST of mRNA_P-littoralis_Contig175.34.3 vs. uniprot
Match: A0A7S3PCA1_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3PCA1_9STRA)

HSP 1 Score: 317 bits (813), Expect = 1.180e-97
Identity = 153/247 (61.94%), Postives = 186/247 (75.30%), Query Frame = 3 
Query:  333 AAVGGATVLCDDAVHTVEYDWPHTGFLQTFDHAAIRRGWQVYREVCSTCHSIKFVAFRNLIGVSHTEAEVKKLAAEFEVEDGPNDEGEMFERPAKPSDRIPGPYKNEATARAANNGAYPPDLSLVVKGRHLGHHYVMSLLTGYTDAPVGKDLLPGLHYNPYFPGTSISMPPPLMDGQVEYPDGTEATVSQMAKDVTTFLAWCAEPEMDERKRMG-MKWCTAMFIGLGLSMYYKRFRWSPLKTRKITY 1070
            AAV   T+L DD VH   + W H GF  ++DHAA+RRG+QVYR+VCS+CHSI+ + +R L+GV+HTE EVK +  E +V DGPNDEGEMFERPAK  D++P PY NE   RAAN GAYPPDLSL+VK RH GH Y+MSLLTGY D P GK ++ GL+YNPYFPG  ISMPPPL DG VEYPDGT AT+SQ A+D+  FL + AEPEM++RK+ G +   T  F+ LG S Y KR+ W+PLKTRKI Y
Sbjct:   25 AAVPAITLLSDDVVHPPVFPWRHRGFFSSYDHAALRRGFQVYRQVCSSCHSIERIRWRELVGVTHTEEEVKDMCKEVDVLDGPNDEGEMFERPAKLFDKLPKPYMNEEQGRAANGGAYPPDLSLMVKARHEGHDYIMSLLTGYMDPPAGKMMMEGLYYNPYFPGGGISMPPPLQDGGVEYPDGTVATISQQARDIAQFLNFTAEPEMEDRKKFGGLAMFTLAFMALG-SGYMKRWNWAPLKTRKIAY 270
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BLAST of mRNA_P-littoralis_Contig175.34.3 vs. uniprot
Match: A0A448ZSM7_9STRA (Cytochrome c domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZSM7_9STRA)

HSP 1 Score: 317 bits (812), Expect = 2.160e-97
Identity = 144/237 (60.76%), Postives = 183/237 (77.22%), Query Frame = 3 
Query:  363 DDAVHTVEYDWPHTGFLQTFDHAAIRRGWQVYREVCSTCHSIKFVAFRNLIGVSHTEAEVKKLAAEFEVEDGPNDEGEMFERPAKPSDRIPGPYKNEATARAANNGAYPPDLSLVVKGRHLGHHYVMSLLTGYTDAPVGKDLLPGLHYNPYFPGTSISMPPPLMDGQVEYPDGTEATVSQMAKDVTTFLAWCAEPEMDERKRMGMKWCTAM-FIGLGLSMYYKRFRWSPLKTRKITY 1070
            +D VH   Y W H G+  +FDHAA+RRG+QVYREVC++CHS+ ++ FR L+GV+HT+ EVK++A + +V DGPND+GEMFERP KP D IP PY N+   RAAN GAYPPDLSL+VK RH G  YV +LLTGY D P GK+++PGLHYNPYFPG +ISMPPPL DG VEY DGTEAT+SQ A+D+  FL+W AEPE +ERK+   K+   + F+ L +  YYKR++W+PLKTR+I Y
Sbjct:   38 EDVVHAPHYPWRHQGYFSSFDHAALRRGYQVYREVCASCHSLHYIRFRELVGVTHTKEEVKQMAMDVDVLDGPNDQGEMFERPGKPYDVIPSPYPNKEAGRAANGGAYPPDLSLMVKARHNGADYVFALLTGYCDPPAGKEMMPGLHYNPYFPGGAISMPPPLNDGGVEYEDGTEATISQQARDIAQFLSWTAEPESEERKKNACKYMVVLAFMALSVG-YYKRWKWAPLKTRQIAY 273
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BLAST of mRNA_P-littoralis_Contig175.34.3 vs. uniprot
Match: A0A067C0J4_SAPPC (Cytochrome c domain-containing protein n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067C0J4_SAPPC)

HSP 1 Score: 316 bits (809), Expect = 4.210e-97
Identity = 150/242 (61.98%), Postives = 180/242 (74.38%), Query Frame = 3 
Query:  345 GATVLCDDAVHTVEYDWPHTGFLQTFDHAAIRRGWQVYREVCSTCHSIKFVAFRNLIGVSHTEAEVKKLAAEFEVEDGPNDEGEMFERPAKPSDRIPGPYKNEATARAANNGAYPPDLSLVVKGRHLGHHYVMSLLTGYTDAPVGKDLLPGLHYNPYFPGTSISMPPPLMDGQVEYPDGTEATVSQMAKDVTTFLAWCAEPEMDERKRMGMKWCTAMFIGLGLSMYYKRFRWSPLKTRKITY 1070
            G T   DD + +  Y + H G L +FD+A++RRG+QVY+EVCSTCHS+  + FR+L+GV+HTE   KKLAA+ EV DGPNDEGEMF+RP K SD  P PY N+  A AANNGA PPDLSL+VK RH G  Y+ SL+TGY  AP G ++  GLHYNPYF G  I+M  PL DGQVEY DGT ATVSQMAKDV  FL+W AEPE DERK+MGM+WC  +F+    + YYKR RW+PLKTRKITY
Sbjct:   29 GVTSFSDDCIPSPHYGFEHQGPLTSFDYASVRRGYQVYKEVCSTCHSLDKIHFRHLVGVTHTEDHAKKLAADIEVVDGPNDEGEMFDRPGKLSDPFPKPYANDEAAAAANNGAVPPDLSLMVKARHAGADYIFSLMTGYVPAPEGNEVGAGLHYNPYFSGGMIAMAQPLNDGQVEYEDGTPATVSQMAKDVACFLSWAAEPEHDERKKMGMQWCFGLFVTALFTGYYKRMRWAPLKTRKITY 270
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BLAST of mRNA_P-littoralis_Contig175.34.3 vs. uniprot
Match: A0A4D9D0D3_9STRA (Cytochrome c domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D0D3_9STRA)

HSP 1 Score: 316 bits (810), Expect = 4.230e-97
Identity = 148/246 (60.16%), Postives = 184/246 (74.80%), Query Frame = 3 
Query:  333 AAVGGATVLCDDAVHTVEYDWPHTGFLQTFDHAAIRRGWQVYREVCSTCHSIKFVAFRNLIGVSHTEAEVKKLAAEFEVEDGPNDEGEMFERPAKPSDRIPGPYKNEATARAANNGAYPPDLSLVVKGRHLGHHYVMSLLTGYTDAPVGKDLLPGLHYNPYFPGTSISMPPPLMDGQVEYPDGTEATVSQMAKDVTTFLAWCAEPEMDERKRMGMKWCTAMFIGLGLSMYYKRFRWSPLKTRKITY 1070
            A  GG  V   D V +++Y W H G L ++D+ A+RRG+QVYREVC++CH+++   FRNL+GV+HTE EVKK+A  ++V DGPN EGEMFERP K SD+IPGPY N+  ARAANNGAYPPDLSL+ K R  G  Y+ +LLTGY D P GK +L GL+YNPYFPG +I+M   L DGQ+EY DGT AT SQM+KDV TFLAW AEPE D RK+ G++W  A+ + L L+ +YKRFRWSPLKT K  Y
Sbjct:   35 AVAGGVAVCSADHVPSIDYGWNHHGLLASYDYPAVRRGFQVYREVCASCHALEHTYFRNLVGVTHTEEEVKKIAESYDVVDGPNAEGEMFERPGKLSDKIPGPYANKEAARAANNGAYPPDLSLITKARPGGVDYIFALLTGYIDPPEGKAILSGLNYNPYFPGGAIAMARQLQDGQLEYEDGTPATTSQMSKDVATFLAWAAEPEHDYRKKAGVQWIGALLVALALTGFYKRFRWSPLKTAKFHY 280
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BLAST of mRNA_P-littoralis_Contig175.34.3 vs. uniprot
Match: W4G561_9STRA (Cytochrome c domain-containing protein n=2 Tax=Aphanomyces TaxID=100860 RepID=W4G561_9STRA)

HSP 1 Score: 315 bits (806), Expect = 1.190e-96
Identity = 150/251 (59.76%), Postives = 189/251 (75.30%), Query Frame = 3 
Query:  333 AAVGGA-----TVLCDDAVHTVEYDWPHTGFLQTFDHAAIRRGWQVYREVCSTCHSIKFVAFRNLIGVSHTEAEVKKLAAEFEVEDGPNDEGEMFERPAKPSDRIPGPYKNEATARAANNGAYPPDLSLVVKGRHLGHHYVMSLLTGYTDAPVGKDLLPGLHYNPYFPGTSISMPPPLMDGQVEYPDGTEATVSQMAKDVTTFLAWCAEPEMDERKRMGMKWCTAMFIGLGLSMYYKRFRWSPLKTRKITY 1070
            AA+GG+     T   DD++  + Y + H G L +FD+AA+RRG+QVY+EVC+TCHS+  + FR+L+GV+HTEAE K LAA+ +VEDGPND+GE FERP K SD +P PY N+  A AANNGA PPDLSL+VK RH G  Y+ +LLTGY +AP GK+L  GL+YNPYF G +I+M   L DG+V Y DGT AT SQMAKDV+ FLAW AEPE DERK+MG++WC  +F    L+ YYKR RW+PLKTRKI+Y
Sbjct:   21 AAIGGSVFTGVTAFSDDSIPALHYGFEHDGPLTSFDYAAVRRGYQVYKEVCATCHSVDKIHFRHLVGVTHTEAEAKALAADIDVEDGPNDQGESFERPGKLSDPLPKPYANDEAAAAANNGAIPPDLSLIVKARHAGADYLFALLTGYVEAPEGKELGNGLYYNPYFGGGAIAMEKQLEDGKVTYEDGTPATASQMAKDVSVFLAWAAEPEHDERKKMGLQWCLGLFAAAVLTGYYKRLRWAPLKTRKISY 271
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig175.34.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVX8_ECTSI5.930e-17195.58Ubiquinol cytochrome c reductase cytochrome c1 pre... [more]
A0A835Z587_9STRA2.010e-11066.94Cytochrome c1 n=2 Tax=Tribonema minus TaxID=303371... [more]
A0A7R9YFS8_9STRA4.880e-10263.01Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S1BBA1_9STRA8.460e-10063.14Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A485LA40_9STRA7.760e-9962.81Aste57867_18449 protein n=1 Tax=Aphanomyces stella... [more]
A0A7S3PCA1_9STRA1.180e-9761.94Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A448ZSM7_9STRA2.160e-9760.76Cytochrome c domain-containing protein n=1 Tax=Pse... [more]
A0A067C0J4_SAPPC4.210e-9761.98Cytochrome c domain-containing protein n=4 Tax=Sap... [more]
A0A4D9D0D3_9STRA4.230e-9760.16Cytochrome c domain-containing protein n=2 Tax=Mon... [more]
W4G561_9STRA1.190e-9659.76Cytochrome c domain-containing protein n=2 Tax=Aph... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig175contigP-littoralis_Contig175:181253..187134 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FVX8
Preferred nameCYC1
PFAMsCytochrom_C1
Model size2894
Max annot lvl2759|Eukaryota
KEGG koko:K00413
KEGG Pathwayko00190,ko01100,ko02020,ko04260,ko04714,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map02020,map04260,map04714,map04932,map05010,map05012,map05016
KEGG ModuleM00151,M00152
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005750,GO:0005758,GO:0005829,GO:0006091,GO:0006119,GO:0006122,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006839,GO:0007275,GO:0007568,GO:0008150,GO:0008152,GO:0008340,GO:0009055,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009719,GO:0009725,GO:0009987,GO:0010033,GO:0010243,GO:0010259,GO:0015672,GO:0015980,GO:0015985,GO:0015986,GO:0016020,GO:0016021,GO:0016310,GO:0016491,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019866,GO:0022900,GO:0022904,GO:0031090,GO:0031224,GO:0031966,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0032501,GO:0032502,GO:0032991,GO:0033762,GO:0034220,GO:0034641,GO:0034654,GO:0042221,GO:0042773,GO:0042775,GO:0042776,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043434,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045153,GO:0045155,GO:0045275,GO:0045333,GO:0046034,GO:0046390,GO:0046483,GO:0046907,GO:0048856,GO:0050896,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0055085,GO:0055086,GO:0055114,GO:0070013,GO:0070069,GO:0070469,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901652,GO:1901698,GO:1901700,GO:1902494,GO:1902600,GO:1990204,GO:1990542
Exons6
Evalue4.24e-185
EggNOG OGsCOG2857@1|root,KOG3052@2759|Eukaryota
Ec32 ortholog descriptionubiquinol cytochrome c reductase cytochrome c1 prec (ISS)
Ec32 orthologEc-01_002540.1
DescriptionCytochrome c1
Cds size858
COG categoryC
BiGG ReactioniMM904.YOR065W,iND750.YOR065W
BRITEko00000,ko00001,ko00002
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig175.34.3prot_P-littoralis_Contig175.34.3Pylaiella littoralis U1_48polypeptideP-littoralis_Contig175 181483..185328 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789842.9147131-UTR-P-littoralis_Contig175:181252..1814821680789842.9147131-UTR-P-littoralis_Contig175:181252..181482Pylaiella littoralis U1_48UTRP-littoralis_Contig175 181253..181482 +
1680789842.997189-UTR-P-littoralis_Contig175:185328..1871341680789842.997189-UTR-P-littoralis_Contig175:185328..187134Pylaiella littoralis U1_48UTRP-littoralis_Contig175 185329..187134 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789842.92971-CDS-P-littoralis_Contig175:181482..1816851680789842.92971-CDS-P-littoralis_Contig175:181482..181685Pylaiella littoralis U1_48CDSP-littoralis_Contig175 181483..181685 +
1680789842.9408207-CDS-P-littoralis_Contig175:182778..1828841680789842.9408207-CDS-P-littoralis_Contig175:182778..182884Pylaiella littoralis U1_48CDSP-littoralis_Contig175 182779..182884 +
1680789842.955211-CDS-P-littoralis_Contig175:183333..1834221680789842.955211-CDS-P-littoralis_Contig175:183333..183422Pylaiella littoralis U1_48CDSP-littoralis_Contig175 183334..183422 +
1680789842.9639187-CDS-P-littoralis_Contig175:183947..1841411680789842.9639187-CDS-P-littoralis_Contig175:183947..184141Pylaiella littoralis U1_48CDSP-littoralis_Contig175 183948..184141 +
1680789842.976347-CDS-P-littoralis_Contig175:184525..1846051680789842.976347-CDS-P-littoralis_Contig175:184525..184605Pylaiella littoralis U1_48CDSP-littoralis_Contig175 184526..184605 +
1680789842.9848793-CDS-P-littoralis_Contig175:185142..1853281680789842.9848793-CDS-P-littoralis_Contig175:185142..185328Pylaiella littoralis U1_48CDSP-littoralis_Contig175 185143..185328 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig175.34.3

>prot_P-littoralis_Contig175.34.3 ID=prot_P-littoralis_Contig175.34.3|Name=mRNA_P-littoralis_Contig175.34.3|organism=Pylaiella littoralis U1_48|type=polypeptide|length=286bp
MLPVSWFFIIRIRVSYPYDQRARVAAAASAAAGAAAVGGATVLCDDAVHT
VEYDWPHTGFLQTFDHAAIRRGWQVYREVCSTCHSIKFVAFRNLIGVSHT
EAEVKKLAAEFEVEDGPNDEGEMFERPAKPSDRIPGPYKNEATARAANNG
AYPPDLSLVVKGRHLGHHYVMSLLTGYTDAPVGKDLLPGLHYNPYFPGTS
ISMPPPLMDGQVEYPDGTEATVSQMAKDVTTFLAWCAEPEMDERKRMGMK
WCTAMFIGLGLSMYYKRFRWSPLKTRKITYHDIKR*
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mRNA from alignment at P-littoralis_Contig175:181253..187134+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig175.34.3 ID=mRNA_P-littoralis_Contig175.34.3|Name=mRNA_P-littoralis_Contig175.34.3|organism=Pylaiella littoralis U1_48|type=mRNA|length=5882bp|location=Sequence derived from alignment at P-littoralis_Contig175:181253..187134+ (Pylaiella littoralis U1_48)
CAATGATTGCCTTAACCCTTCTAGTTTGCCGAGGAGGAATCTTGCTGCAT
CACTGATTCGATGATGTATGACTCGCGGCAAAATTAACTAGCGCAGCCCC
GAACACCACGTTTCAATCACTGCTCCCCGTTCCGTGTAGGTTTCGTGTAG
TTCCACAGCAAACATTGTTTGATTGCACGCGGTTCCTCGATTTTGCTGTG
TTGTTGTTGCTGCTGCTGCTGCTGCTGCTGATGCTGCCCGTTTCTTGGTT
TTTTATCATCCGGATCCGCGTATCATACCCTTACGATCAGAGAGCCCGCG
TGGCTGCGGCGGCTAGCGCGGCGGCAGGGGCGGCAGCGGTGGGAGGAGCG
ACGGTGCTCTGCGATGACGCCGTGCACACGGTGGAGTACGACTGGCCCCA
CACTGGATTCCTGCAGACTTTCGATCACGCGGCGTGAGTGGGATGGCCTG
ATGTCGTTAATGGGTGCTTATATTTTTTATTTTGCTGACTGTGCCGCACG
TGAAAAGCCGGATCTCTCGAGGCCGTCGGTCACGAACGTATTGTATCGAG
TTGTTCTTTTCTCGTGCCAACCTTCCAAAACGTGGTTTTTGTTGTTTTGC
CTGCGTGTTACATTCTTATTTGGCTGTCGCGGTCGTTGTCGTTGTCGTCA
TGATACTCGGTTCTGTGTCTTGGTCGGCAATGGCGATACATCGGATATGC
GAGGGCGAGCGTGATGGTTTCTCGTGATTTACTCCTGATTTTGCTGGGTA
CCACCAGTTGCGGGAAAATCTTTCGCAACATGCCAAAATCTTTCGCAACA
TGCCAATGCTGCGTTTTTTTTTTTTAAGGCGTGTGTTGAGTGTATCAGAA
ACATGGCGTGTCGTAGCCGTCAGGTACAGCGCATGGTTTCTTCGGCACGT
GTCGGGTCCATGACTTGCTATCATTTTTGTGGTCGCACTTGTCGGTGGTT
GTTTTTGGCGGTTCTAGGCCCCGCGTAGTGTTTTTGTCGCTTGTCGCTTG
TCGCTTGACACGCAGACCTTTTGCGCGCTTCCCTCCGTTGACGTTACTGT
ATGGTCTCACTCGTTCCGGCTGAAAATGCTCCAAAGCTCACCTTACCCCG
TTGCGGTAACGATCCAACTCATAACACGCCCCAAAACTCTGGAAATGACC
ACACACACCGCCAAGACGGGAGAAGAAACGCCGCCGCGACAGTTGCGCCC
TTGAACCATCGATGACGCGGTGCGGTGTTCGTGTTGTTTTTGTTGCTTCG
GAGGTGAAGAGTAGGAGGATCACGCTCCGTGTCAGTCTCGTGAGTGAGAT
CACGAAGCCACCTTCGAGAATCACAGCTTCAGCGGTGGGCGTGCATACAT
CGCTACCAAGATTATCACGAATGTACGCATGTCTGTACGAGTCCGAGAAA
CCACGCCGTTCTTGACTTGCGCGAAATGCGCCGCGGTCGTCCTCGACTTC
GTCCGTGTCACTGCTGTCGCTTTGCATTTTGTTTTATGCACCTCTTTTTT
TCCTTTTTTCCTTTTTCTCTTTTCAGAATCCGCCGAGGGTGGCAGGTTTA
CCGGGAGGTCTGCTCGACCTGCCACTCGATTAAGTTCGTCGCTTTCCGCA
ACCTTATCGGCGTTTCGCACACTGAGGCGGAGGTGAGGGAGTGGGGCTGT
TGGCAGACGACCAAGCATAAATTGCTGTCATGCTACTGTGTGTGTTTTTT
TGCGTGGTCGTGTGTCTTGCGAGGTGACTCGCAAGTTTCAGAGTTGCAAT
AGAAACACGTGGCGGTGTGGTCGGTGGTTGTGCCCGTTTTCTTGTTGCTG
CTGGTGGATGGTGATTTTATTCGTGAGTCGACCGCCTCTCCTTGTGTTTC
ATTTTGCCTCTTTTTTTTTGCCGGTTGACGCCCCGACTTAATCATGGCAA
TTTGATCGCTCGTGTCCTTGTTTCTCTGTGTGTGTCGGGTGTGTGTGCAA
CATTTTTTTGTTTCTTGTTGTTCTCCCTCTGACACTTCCTATGCCATCAC
GGCTGCTGCTGCTTCTGCCGCCGCCGCCGCTGCAACGTTTTGTTTTGGTT
CGGTTTTGTTGTTGTACGTCTTCCTTCGCAGGTGAAGAAGCTCGCCGCGG
AGTTCGAGGTGGAGGACGGGCCGAACGACGAGGGCGAGATGTTCGAGCGC
CCGGCTAAGCCCTCCGACCGGTAAGATATCCGCCCCCCCCTCTGTTGTAC
TTCGATTTTTTCTAGGAAGGCGGGCAGCGGTTCAGAAAGACAGACGGTGA
CGGAAAAGGTGGAGAGGAGGTCTGAGAGAAGGAGATGGAAAGAGTTGAAG
AGACAAACGGAGAGAGCGGAAGTTCGCGAAGAGAAAAGCTCAAGGGTTGT
CCCGACTGTAGTGGCGAGCAGGCGGGCGCTTCTTCATGTCTGCAACGCTT
TCACTCCTCGGTGTTTTCGAGCGGTTGAGCTGTTTTTACGTGTACAGGAC
GGTAGCGTTGGGTTGTTTTGCAGGGTGCCGGCCGAACGCAACTTGACCTC
GCTCTGGTAGATCTCGGGCTTGAAGTTCGTTGGTTGGTTGTTGTCGTTTG
TTGTTGTTTCACGTCATCGATCCACATCCTTACCCTTCCGTTGCTGCCCC
CCCCTCCCCCCCTCCGCCTCATCTCCCCCCCTATTTTGATTTGTGTGTTG
TGCGCTCATTCAACGGAACCAAACTGAAATAACCCACCACGCTAGCATCC
CTGGCCCGTACAAGAACGAGGCCACCGCGCGCGCGGCCAACAACGGGGCT
TATCCGCCGGATCTTTCTCTGGTGGTGAAGGGGCGCCACTTGGGCCACCA
CTACGTTATGTCGCTCCTGACGGGCTACACCGACGCCCCCGTTGGCAAGG
ACCTCCTCCCTGGGCTGCACTACAACCCCTACTTCCCTGGTGAGTGGGCA
ACCGAGGGGCGGGGCGGGCGTGTATCCGTGATGAACCACCGAAAAGCACA
GGGTCAAGCATGTAGCACAAAGGCGGGACATGGCGTGGTGGGGAGGGCGG
CCACCGTCGGACGGCGCGCGTGCCTTGAAAGAATGCTGCTCCAATTCCTC
ACTGGTTGTACCTACGGTATAACGAGATAGCTGCTGCGCGTGTGGTACCT
GCTGTGTTGCTGGTGGAATTTGTTTTATTGCGGGTATAACGTTTCGAGGC
CGCTAGCGACCTTGTCTCCGTCGTCATCTCTAGCCTTCACAAATACCGTT
CTGCTGCGTGGCCTCCCATTTTTTCACACGTTCGTGCGGAAATTATTTTG
CTGTTGCCGCGGCACATTCGCAGGGACGTCCATCTCCATGCCCCCTCCGC
TAATGGACGGGCAGGTCGAGTACCCCGACGGCACCGAGGCCACCGTATCG
CAGGTAAATACCGTACACGCATACTTTGTTGATAAAGGGAACTGCAGCAC
TCGTGACGCCACGTAGACTGTAGCGCCAGCACGTGTCTCATAGCTCCAGC
ACAGATCCGAGAAGTCGTGCTTGGTTCGCAAGAGTTGAGAGTTTGGTGGG
ATCATCCATCAAACGCAAGGGATGGGTCAAAAAAAAGCGCCGCCTGCGCC
TGCGTTAGGATTGCAGTCCGTGATCGACACTGCGAGGATGTATGTAGGGC
CATTCAAGAGATGAGACTAGAAAAACGCGGTGATCGGCCACGTTCACTCG
AATGGACGCTTCGTGCGAACTTTGAAATGAAGACGAAGAAAGACACGTCA
AATAGAGGTAGACTTGTTGTCCCCCCCCCCTGAACCTTGAACACATGACG
ACGCTCCTTTCCGGTATTGCATGCATTTTAGGTCGACAGTCCCATGACTT
CCTCAAACAACAATTGAATACACCCCCTCCTTCGTGCATGCGGCGCCGTT
TTGCGTCATGACTATCGGACTCGATTGCTCGGTGTAACAGATGGCCAAGG
ACGTGACGACGTTCCTCGCGTGGTGCGCCGAGCCAGAGATGGACGAGCGC
AAACGCATGGGCATGAAGTGGTGCACGGCCATGTTCATCGGGCTAGGGCT
GTCCATGTACTACAAGCGCTTCCGGTGGTCGCCACTCAAGACCCGCAAGA
TCACCTACCACGATATCAAGCGCTAAGAAGTAATCGCATCTCAAGGAAAT
GAAACAAGTACCCACCTACCGCGTGTGCCCCACGGTTATTTTTTTCAGTT
TGGTTTTGTTTTGTTTGGCCGTTGACTTGAGGGCGTCGTGCCTACGTCAG
GCAGGTGCGCGGGGATGGGCGTAGCCGGCGTGTTGAGCTGCTTGCTGTCT
TTTGTTTAAAAACGCGGTAGTTTCACGGGTGCGAGAGAAGAGATACAGCG
GAATACGAAGCAGAGTTGAGGAACCTTTTGGGGGCTCGGATGGGCGGCTT
TTCGCATCGGAGGAACTCCGGTTGATATGGTAGGAAATGATTTTGCATCA
ACATTTGAGCAAAAGGAAATTTGGATCCTTGTGGCTGCGGGAGCGAGTCG
TTATTGAAACAACTGCGGAGGGACGGTGGGAGAAGGGAGCGTTCGCTTGC
CTAGTGCATGGTTTACCGCCGCCGTGTACCTTTTCTGTGGGTACGGAAGT
GTCGATGGACGATTCAGCTCAGGTGCAATACGGGGGGAGGCACAGGATCC
TTGACAAGGTTGGGAAGGTGGTGGTGCTCACGTCCGCACGCACACGTTGG
CTGGATAGGCCCGGTTGTCCTCAAAAATTGTGAAATTAATGGAAGACACG
TCCATTGCATGAGACACTCGACACGGTTTGTTTCTCTTACACCACGCTCC
CTTATATTTGCTGGCCAGGACTTGTGACAGACACGTGTTCGTGTCAAGAG
CAAAACACCGAGTGTAGTTCCTCGCTACTCCGTAATCACTTGCAGCAGAG
CGAAATGAAGCACTGCTTTTTTTTTTTTGATGTACGGACAATGTGGATTG
AGCCCGGCTCTCCACGGATGAAGGAGGGGAACCGACCACCTTCCTAGACT
GAGAGGCCCAGCATGAAATTTCGTTGTTTTTCTGCATATACGCCAGTGAT
GTGCTGCTACCTCTTGCCCAACACAATAATACTGGTTCCAGGTTTCAGTA
GTGTCTTCATTCAGTACCCCGACACGGGGAAATTTTGATGGGAGCAACAA
ATTGATGGTGTAGGAAAACCCAGCAAACAACCGAACTATGTGTGTCGTAT
CGCGTGTGCGGCACGTCGAAAGGGGCAACAAAAACCATCGCCGCGTCTCT
AAATTTAAGTTTCCTGAGGGCTCCTTTCGGTTGGGAATCCCTTGGTTGCG
CAGAGCAACATCGTCACCAACGAATGCTTGCCAGGAACGGGAAACACATG
ACTGTCGACCCCCCTAGCCTAGGGGAAACTTTTGCTCCTGGTGTCACCGC
AGGAGTGCTCGACACGTGTCAACAAATAGCTGGTTATTGGTGACCTCTTG
GTGAGGCTTCATGAATCACACGCGAGAAATAGACCCTAGATACGCTGTGT
CGGACGTGGAAATGGCTGGAATGTTTCGTGGACGTGCCATCATCCCGTCG
GTTTCGGACCCCAGCGTACACACTTCGGTAGAGAGTTGGGGGTACCAGCC
GGGAGTACGCAGGAGGACGGTCAGCACAGGAGTTTTTTTTCTTCGCCCTT
TTTTTGCGGTGCCTGTTTAGGTCTTGCCTTTTTTACTTTTCTCCGCGGAA
GGGTACGGCCGTTCCCTTCCCCCCGATAACTTTTCGTAAACTTGTCTTCA
CTCGAGATGTGGCTTCTCCCCACTGCTACTACTGTAGGTGTTGTGTGAGA
ACAAATCCCAGTTCAACAAGGTTCAAAGTCACGGTCTTCCTTTCAGAGGG
TTTTGAGATACCTTGCGAACCACCGAGTGACACCAGGTGCTTTTGCTTTC
AGAGGGTTTTGAGATACCTTTCGAACTACCGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig175:181253..187134+

>mRNA_P-littoralis_Contig175.34.3 ID=mRNA_P-littoralis_Contig175.34.3|Name=mRNA_P-littoralis_Contig175.34.3|organism=Pylaiella littoralis U1_48|type=CDS|length=858bp|location=Sequence derived from alignment at P-littoralis_Contig175:181253..187134+ (Pylaiella littoralis U1_48)
ATGCTGCCCGTTTCTTGGTTTTTTATCATCCGGATCCGCGTATCATACCC
TTACGATCAGAGAGCCCGCGTGGCTGCGGCGGCTAGCGCGGCGGCAGGGG
CGGCAGCGGTGGGAGGAGCGACGGTGCTCTGCGATGACGCCGTGCACACG
GTGGAGTACGACTGGCCCCACACTGGATTCCTGCAGACTTTCGATCACGC
GGCAATCCGCCGAGGGTGGCAGGTTTACCGGGAGGTCTGCTCGACCTGCC
ACTCGATTAAGTTCGTCGCTTTCCGCAACCTTATCGGCGTTTCGCACACT
GAGGCGGAGGTGAAGAAGCTCGCCGCGGAGTTCGAGGTGGAGGACGGGCC
GAACGACGAGGGCGAGATGTTCGAGCGCCCGGCTAAGCCCTCCGACCGCA
TCCCTGGCCCGTACAAGAACGAGGCCACCGCGCGCGCGGCCAACAACGGG
GCTTATCCGCCGGATCTTTCTCTGGTGGTGAAGGGGCGCCACTTGGGCCA
CCACTACGTTATGTCGCTCCTGACGGGCTACACCGACGCCCCCGTTGGCA
AGGACCTCCTCCCTGGGCTGCACTACAACCCCTACTTCCCTGGGACGTCC
ATCTCCATGCCCCCTCCGCTAATGGACGGGCAGGTCGAGTACCCCGACGG
CACCGAGGCCACCGTATCGCAGATGGCCAAGGACGTGACGACGTTCCTCG
CGTGGTGCGCCGAGCCAGAGATGGACGAGCGCAAACGCATGGGCATGAAG
TGGTGCACGGCCATGTTCATCGGGCTAGGGCTGTCCATGTACTACAAGCG
CTTCCGGTGGTCGCCACTCAAGACCCGCAAGATCACCTACCACGATATCA
AGCGCTAA
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