mRNA_P-littoralis_Contig175.94.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig175.94.1
Unique NamemRNA_P-littoralis_Contig175.94.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig175.94.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig175contigP-littoralis_Contig175:450152..453114 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size185
Hectar predicted targeting categoryother localisation
Exons2
Cds size183
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789841.009519-CDS-P-littoralis_Contig175:450151..4502321680789841.009519-CDS-P-littoralis_Contig175:450151..450232Pylaiella littoralis U1_48CDSP-littoralis_Contig175 450152..450232 +
1680789841.0211766-CDS-P-littoralis_Contig175:453012..4531141680789841.0211766-CDS-P-littoralis_Contig175:453012..453114Pylaiella littoralis U1_48CDSP-littoralis_Contig175 453013..453114 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig175.94.1prot_P-littoralis_Contig175.94.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig175 450152..453114 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig175.94.1

>prot_P-littoralis_Contig175.94.1 ID=prot_P-littoralis_Contig175.94.1|Name=mRNA_P-littoralis_Contig175.94.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=61bp
EFLIHPDTRKLLDSKLPPGSEHRALLNVLSGTMVRIIDKIQFDRVTMGES
PDLELSATQH*
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mRNA from alignment at P-littoralis_Contig175:450152..453114+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig175.94.1 ID=mRNA_P-littoralis_Contig175.94.1|Name=mRNA_P-littoralis_Contig175.94.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2963bp|location=Sequence derived from alignment at P-littoralis_Contig175:450152..453114+ (Pylaiella littoralis U1_48)
GAGTTTCTCATCCACCCGGATACGAGGAAGCTGCTGGACTCGAAGCTCCC
GCCGGGTAGCGAGCATAGGGCTCTCCTGAACGTGCGTGTGTGCTGTTTAT
TTATTTTTTATATGTCCTCACGGTACGCTATGTATCGTTACAAATGCGAC
AGGAGGGTTCTCAACCGTCCAGACTTTCTTATTGATGGCTGTGCTGACTT
ATACATGCTTACCTACCGAAACTAAATCGTCTGAGCTTACCCACCGAAAT
TGCAACGTATTTCGCACGGACTGCCTTGGCCTAGGATCTCATCCAAGGCA
ACCTCGCGAAGGGTGACGGGAGAGGGTATCGGTTTCACCCGTCGACGTTG
AAGTTCTGCATCTACTACAGCGGGGTAGCGGGCACGGGCGCGTACAACGC
GCTGAGGGAAGTGCTGCACCTGCCCTCCCCATCGCACATCAGGAACCTGC
GGGCACGGGCCGTACCCGGGCAGAGCGGCTTGCTCTTCGATAACATCAAG
GTAAGATGCTCGAGTCCATCTGGAGGGCCATGAACGCCTCCCAAACCGGT
TGTCTTTGTAGTATAGCGGTTCCAGTTCAGTGTCGGTATGGATGCAATAT
CACCGTTACAGAGCAGTATCGGCCCGAACATATCTGACTGAAAATACGGC
GGAGGCTGGGTGTCTTTTTCATTCCAGCCAAGGCACCACACTACCTCGGC
CACTGAAAAGACAATGTAAGCCAAAATTATGTACAACGGCGTTGTTGTAA
CTATTATCGCGAATTTAAAAAGTATGTATGCAGACGCCAAACAAATCGAC
GATGTTTGCCGTGCGCAGCGTGAAAAGATGGGGTTCGATTATGTAACAAT
AGCTCTGCCAATCGTGTGCATTGGCGAAGCTGTGCTGATAGGGACAGAAT
CCCGGCGCCAGGTGCCAGATCGTATAAGCGTTTGGCTTTCTTATGTTGCA
GGATGTGCCGAGCCTCGCCCGTTGCATATCTCTGAGAAAACCTCAGGCAG
AGTTTCTTGAAAACGAGTTTCTTCGGAGCGGGCCGGGACTGTTCTGAACT
TGTCCACCCTCGACCCGTCCGTCGTTCGCGGTCCGCAGAGGTATGGGGAC
CTCGCCGCTGTGCAAGACGCGGATGCGGCCGAACTCATGGGTTCTTTGGC
ATTTGACTGTGTCCACCTCAACAAGAACGGGCTCAGCTACGCACCGAACG
GAGCCGGGTTGACGGGCCTTGTGGACGACACCACGTTCTTCAATCCAATC
TTCGCGGAGAACGGGGAGGAGGAACCGGATTTGGAGAAGACCCTGGGCAA
GATCATCGCCACGCAACACGTTGAGGTGATGTTTGATTTTGGGTAAGGGT
TAGCGTGTGACCACGGCAACTGGCCGTGTACGTTGATCAGTACGGACAAA
GGGGGTGCTGGATGGAGATATCGGGTTAGGTTTTTAGTGTGAAGACAACA
ATGCCACAATTCAAACGTTGGTTTGAAGCTGTGGTGCGTTATCGGCGTCG
GCCAGCAAAGGCTCAGCATTGTATTCGTGTCCACAGATAAGTATCCTCAT
GTACCCCGTCATAAACCTCACATGGCAGAGTGACCATCGAACGTAACCCC
TCTACTACCTCGTTAACACGGTGGGTTCCCCCTCCTTCCATCCCGGCGCG
AAACATTAGATGTTCTTCATCAGTGAGGCCAACCCGGAGTACAAGTTTGC
CGTGTGGCGCGAATCCGTCGGGTCTCTCAACACGGACTACGTACAGCGAA
TGGTGATGACAGTTGCGCGCGCGCTGGCAACTGCGAACCAATTCAAGGTG
TTCGACGTCGGGTGCTTGGTGTGCGATGGGGCGCAAGAACAGTGAGTCCA
CACAATGTTGGGTCAGCAGTTTGTGCTTCCTAGCACGTATCTGGCTGGGG
TTGTTGTTTTGAGCGACCCCACCCGCATGCTGCACGCCTCAGGATGGGCA
ACGGTCGCAGGTGTATTCTGCACAAAATCGGCTGAACGTGTGTGCGCGGG
AGCTCCACCCCTCACCCTCGGACCCCATCACCCTCCCTTCCCACTTACAC
GTCCCCCTCTCCCTCCTTCCCTGTGCGCATTTACCACTTCTCGGCCGCTC
TCCGTAATATATGCGCTACATATCATAGCCGCTCGTATCAGCTGCGAGCC
GGCACGTTCAAGTTCGGCGCATTCTCACAAGGCGATGCCGAGAAATCCTT
CGCGGAGTTCCCGGTCGCCTTCCGTCATCCTGTCCACGGAGGCCCGATTT
TTAACATGAGCGACCCTCCGCATATCCTGAAGAAGATCGCAAACGCCTGC
TGGCACAGTGACCTCGCCGGTAAGCAGCGTGCCCTCGCGATGTGGTGCAC
CGACGAACACGGCAACGAGAAGTTGGTTCGTTTCTCGCTGAAGACCGGCG
AGAGAGCGTACCGGCTTGTCGAGAACGACGGCGACAGCCTTTCCACCGAG
GAGCGAGTGGCATCCATCTCGACCTTCCGCAACTTGAAGCCGGGGTGCTT
CAACGGGAACAGCTGGAACTGCATGAACGTCGGCATGTCTTCGAAGGTGA
TCGACCGCTGTTAGAAGCGTAATCATAGACCTCATTGTCTCGGGTGGGCG
GTAAACCTTTATATGTGTGGAACGTGTCACGTGTATAAATCCCCTTGCCT
CGTGTCATGCCGCATTTATATCCCACGAGGGTTACAAGCTAGCGTTACTG
AGCACGGCAAACATGGTAATGCTAAGCGCTTGCAGTACTCTGTGTTGTGT
TCGAAGGTCGTGTGCACGAATGGCTTGTAGACGATGCCGAGAGAGGCGCA
TGCAGTCTCGATCCATCTCTCACCCGAGGCCGTTCCATCATGTTGTCCGT
TATTGTCCTAGGTGCTGTCGGGGACGATGGTTCGTATCATCGACAAGATT
CAGTTCGACCGCGTGACCATGGGAGAATCACCCGACCTGGAGTTGAGTGC
TACGCAGCACTAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig175:450152..453114+

>mRNA_P-littoralis_Contig175.94.1 ID=mRNA_P-littoralis_Contig175.94.1|Name=mRNA_P-littoralis_Contig175.94.1|organism=Pylaiella littoralis U1_48|type=CDS|length=183bp|location=Sequence derived from alignment at P-littoralis_Contig175:450152..453114+ (Pylaiella littoralis U1_48)
GAGTTTCTCATCCACCCGGATACGAGGAAGCTGCTGGACTCGAAGCTCCC
GCCGGGTAGCGAGCATAGGGCTCTCCTGAACGTGCTGTCGGGGACGATGG
TTCGTATCATCGACAAGATTCAGTTCGACCGCGTGACCATGGGAGAATCA
CCCGACCTGGAGTTGAGTGCTACGCAGCACTAG
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