mRNA_P-littoralis_Contig175.49.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig175.49.1
Unique NamemRNA_P-littoralis_Contig175.49.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig175.49.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig175contigP-littoralis_Contig175:233750..234108 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size346
Hectar predicted targeting categoryother localisation
Exons2
Cds size303
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789840.9380052-UTR-P-littoralis_Contig175:233749..2337551680789840.9380052-UTR-P-littoralis_Contig175:233749..233755Pylaiella littoralis U1_48UTRP-littoralis_Contig175 233750..233755 -
1680789840.9769804-UTR-P-littoralis_Contig175:234071..2341081680789840.9769804-UTR-P-littoralis_Contig175:234071..234108Pylaiella littoralis U1_48UTRP-littoralis_Contig175 234072..234108 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789840.9532301-CDS-P-littoralis_Contig175:233755..2339371680789840.9532301-CDS-P-littoralis_Contig175:233755..233937Pylaiella littoralis U1_48CDSP-littoralis_Contig175 233756..233937 -
1680789840.9670498-CDS-P-littoralis_Contig175:233950..2340711680789840.9670498-CDS-P-littoralis_Contig175:233950..234071Pylaiella littoralis U1_48CDSP-littoralis_Contig175 233951..234071 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig175.49.1prot_P-littoralis_Contig175.49.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig175 233756..234071 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig175.49.1

>prot_P-littoralis_Contig175.49.1 ID=prot_P-littoralis_Contig175.49.1|Name=mRNA_P-littoralis_Contig175.49.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=101bp
MCTTRTPPQPHTEKPLFKLKTAAKHSTTAAKHSTRKSRPHTDMSLMDLPE
RTGVDEAHSQSNSSAVDVEGGDACMQSSPAEDQRQEQQQQQGEGASGRMK
*
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mRNA from alignment at P-littoralis_Contig175:233750..234108-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig175.49.1 ID=mRNA_P-littoralis_Contig175.49.1|Name=mRNA_P-littoralis_Contig175.49.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=359bp|location=Sequence derived from alignment at P-littoralis_Contig175:233750..234108- (Pylaiella littoralis U1_48)
GGCTACCCCTATTTGCACGCCACACTTGCAAACAAAAATGTGCACGACTC
GAACGCCTCCACAACCACACACCGAGAAACCCCTTTTCAAACTCAAAACA
GCAGCGAAACACAGCACGACGGCAGCGAAACACAGCACGCGCAAGAGTAG
ACCACACAGCAGACCACACAGCAGATATGTCCCTGATGGATCTTCCCGAG
AGAACGGGAGTTGACGAAGCGCATTCACAGAGTAACAGCAGTGCCGTCGA
CGTAGAGGGCGGCGACGCGTGCATGCAATCAAGCCCAGCCGAAGACCAAC
GGCAGGAGCAGCAGCAGCAGCAGGGAGAAGGAGCATCAGGACGAATGAAA
TGAAACCCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig175:233750..234108-

>mRNA_P-littoralis_Contig175.49.1 ID=mRNA_P-littoralis_Contig175.49.1|Name=mRNA_P-littoralis_Contig175.49.1|organism=Pylaiella littoralis U1_48|type=CDS|length=303bp|location=Sequence derived from alignment at P-littoralis_Contig175:233750..234108- (Pylaiella littoralis U1_48)
ATGTGCACGACTCGAACGCCTCCACAACCACACACCGAGAAACCCCTTTT
CAAACTCAAAACAGCAGCGAAACACAGCACGACGGCAGCGAAACACAGCA
CGCGCAAGAGTAGACCACACACAGATATGTCCCTGATGGATCTTCCCGAG
AGAACGGGAGTTGACGAAGCGCATTCACAGAGTAACAGCAGTGCCGTCGA
CGTAGAGGGCGGCGACGCGTGCATGCAATCAAGCCCAGCCGAAGACCAAC
GGCAGGAGCAGCAGCAGCAGCAGGGAGAAGGAGCATCAGGACGAATGAAA
TGA
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