mRNA_P-littoralis_Contig174.82.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig174.82.1 vs. uniprot
Match: A0A6H5KLX9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLX9_9PHAE) HSP 1 Score: 181 bits (459), Expect = 1.160e-47 Identity = 109/223 (48.88%), Postives = 144/223 (64.57%), Query Frame = 3
Query: 6 SEIAEGLARMMAMIMEVFATFGLTVSEKKTETMPIRVPEKPEVPREPIPPPTPKLPSKQRA*KA*GSEFRYLAALFSRM-ESSRAR*TPKPSREGLPQEDSREVFDQSG-PWRLKVRLLKAGVMEALLYGCMIWAPRADHCALLRTTHHRLPLQVVGYHRVRGTCRPLSCAKAPEKTGSHCVETIIRQRRLLHAGTLARQDHGRLQKRLMFGKLAWGEAPGRG 668
S+ A+GLARMM +I+EVF FGLTVSE+KTET+ +RV EK T + ++ A +EFRYL L + + +R + + + E+FD+ G P+RLK RLL+A +EALLYGCM W+PR +H +L+TTHHRL L+V+GY R RGT R LS A+A ++ G VE +RQRRLL AG +ARQ GRL KRLMFG+L GE PG+G
Sbjct: 43 SKSADGLARMMTIIVEVFREFGLTVSERKTETLVMRVKEKQRXXXXXXXXLTIEAAGQRYAQT---TEFRYLGGLINEQGDLTREINHRSKAAWACIRRYATELFDRPGAPFRLKARLLQAEAVEALLYGCMTWSPRRNHYGMLQTTHHRLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGQG 262
BLAST of mRNA_P-littoralis_Contig174.82.1 vs. uniprot
Match: A0A6H5JAH7_9PHAE (Reverse transcriptase domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAH7_9PHAE) HSP 1 Score: 178 bits (451), Expect = 2.950e-47 Identity = 112/224 (50.00%), Postives = 138/224 (61.61%), Query Frame = 3
Query: 6 SEIAEGLARMMAMIMEVFATFGLTVSEKKTETMPIRVPEKPEVPREPIPPPTPKLPSKQRA*KA*GSEFRYLAALFSRMESSRAR*TPKPSREGLP--QEDSREVFDQ-SGPWRLKVRLLKAGVMEALLYGCMIWAPRADHCALLRTTHHRLPLQVVGYHRVRGTCRPLSCAKAPEKTGSHCVETIIRQRRLLHAGTLARQDHGRLQKRLMFGKLAWGEAPGRG 668
S AEGLARMM +I+EVF FGLTVSEKKTET+ +R +KP +P PPP + + + A +EFRYL L + R SR + RE+FD+ P+RLK+RLL+A MEALLYGCM W+P + H LR+ HHRL L+V+GY R + T R LS A+ + VE IRQRRLL AG LARQ GRL KRLMFG+LA GE RG
Sbjct: 11 SRSAEGLARMMTLIVEVFGEFGLTVSEKKTETLLMRAKDKPTTTSQPAPPPPLTIEAAGQK-YAQTTEFRYLGGLVNE-HGDLTREINYRSRGAWACLRRYGRELFDRPQAPFRLKIRLLQAEAMEALLYGCMTWSPLSGHYQTLRSIHHRLLLRVIGYKRKKDTYRQLSYAQTLRRVECESVEPTIRQRRLLFAGALARQPDGRLPKRLMFGELAGGEKRRRG 232
BLAST of mRNA_P-littoralis_Contig174.82.1 vs. uniprot
Match: A0A6H5JWS4_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWS4_9PHAE) HSP 1 Score: 179 bits (454), Expect = 1.450e-46 Identity = 108/223 (48.43%), Postives = 144/223 (64.57%), Query Frame = 3
Query: 6 SEIAEGLARMMAMIMEVFATFGLTVSEKKTETMPIRVPEKPEVPREPIPPPTPKLPSKQRA*KA*GSEFRYLAALFSRM-ESSRAR*TPKPSREGLPQEDSREVFDQSG-PWRLKVRLLKAGVMEALLYGCMIWAPRADHCALLRTTHHRLPLQVVGYHRVRGTCRPLSCAKAPEKTGSHCVETIIRQRRLLHAGTLARQDHGRLQKRLMFGKLAWGEAPGRG 668
S+ A+GLARMM +I+EVF FGLTVSE+KTET+ +RV E+ T + ++ A +EFRYL L + + +R + + + E+FD+ G P+RLK RLL+A +EALLYGCM W+PR +H +L+TTHHRL L+V+GY R RGT R LS A+A ++ G VE +RQRRLL AG +ARQ GRL KRLMFG+L GE PG+G
Sbjct: 11 SKSADGLARMMTIIVEVFREFGLTVSERKTETLVMRVKERQRXXXXXXXVLTIEAAGQRYAQT---TEFRYLGGLVNEQGDLTREINHRSKAAWACIKRYATELFDRPGAPFRLKARLLQAEAVEALLYGCMTWSPRRNHYGMLQTTHHRLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGQG 230
BLAST of mRNA_P-littoralis_Contig174.82.1 vs. uniprot
Match: A0A6H5KA81_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA81_9PHAE) HSP 1 Score: 181 bits (458), Expect = 1.010e-44 Identity = 109/223 (48.88%), Postives = 144/223 (64.57%), Query Frame = 3
Query: 6 SEIAEGLARMMAMIMEVFATFGLTVSEKKTETMPIRVPEKPEVPREPIPPPTPKLPSKQRA*KA*GSEFRYLAALFSRM-ESSRAR*TPKPSREGLPQEDSREVFDQSG-PWRLKVRLLKAGVMEALLYGCMIWAPRADHCALLRTTHHRLPLQVVGYHRVRGTCRPLSCAKAPEKTGSHCVETIIRQRRLLHAGTLARQDHGRLQKRLMFGKLAWGEAPGRG 668
S+ A+GLARMM +I+EVF FGLTVSE+KTET+ +RV E+ T + ++ A +EFRYL L + + +R + + + E+FD+ G P+RLK RLL+A +EALLYGCM W+PR +H +L+TTHHRL L+V+GY R RGT R LS A+A ++ G VE +RQRRLL AG +ARQ GRL KRLMFG+L GE PGRG
Sbjct: 294 SKSADGLARMMTIIVEVFREFGLTVSERKTETLVMRVKERQRXXXXXXXVLTIEAAGQRYAQT---TEFRYLGGLVNEQGDLTREINHRSKAAWACIRRYATELFDRPGAPFRLKARLLQAEAVEALLYGCMTWSPRRNHYGMLQTTHHRLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGENPGRG 513
BLAST of mRNA_P-littoralis_Contig174.82.1 vs. uniprot
Match: A0A6H5KLC4_9PHAE (Reverse transcriptase domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLC4_9PHAE) HSP 1 Score: 177 bits (448), Expect = 1.560e-44 Identity = 108/223 (48.43%), Postives = 142/223 (63.68%), Query Frame = 3
Query: 6 SEIAEGLARMMAMIMEVFATFGLTVSEKKTETMPIRVPEKPEVPREPIPPPTPKLPSKQRA*KA*GSEFRYLAALFSRM-ESSRAR*TPKPSREGLPQEDSREVFDQSG-PWRLKVRLLKAGVMEALLYGCMIWAPRADHCALLRTTHHRLPLQVVGYHRVRGTCRPLSCAKAPEKTGSHCVETIIRQRRLLHAGTLARQDHGRLQKRLMFGKLAWGEAPGRG 668
S+ A+GLARMM +I+EVF FGLTVSE+KTET+ +RV E+ T + ++ A +EFRYL L + + +R + + + E+FD+ G P+RLK RLL+A + ALLYGCM W+PR DH LL+TTHHRL L+V+GY R GT R LS A+A ++ G VE +RQRRLL AG +ARQ GRL KRLMFG+L GE PG+G
Sbjct: 133 SKSADGLARMMTIIVEVFREFGLTVSERKTETLVMRVKERQRXXXXXXXVLTIEAAGQRYAQT---TEFRYLGGLINEQGDLTREINHRSKAAWACIRRYATELFDRPGAPFRLKARLLQAEAVAALLYGCMTWSPRRDHYRLLQTTHHRLLLRVIGYRRKGGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGQG 352
BLAST of mRNA_P-littoralis_Contig174.82.1 vs. uniprot
Match: A0A6H5JEX7_9PHAE (Reverse transcriptase domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEX7_9PHAE) HSP 1 Score: 180 bits (456), Expect = 1.020e-43 Identity = 108/223 (48.43%), Postives = 144/223 (64.57%), Query Frame = 3
Query: 6 SEIAEGLARMMAMIMEVFATFGLTVSEKKTETMPIRVPEKPEVPREPIPPPTPKLPSKQRA*KA*GSEFRYLAALFSRM-ESSRAR*TPKPSREGLPQEDSREVFDQSG-PWRLKVRLLKAGVMEALLYGCMIWAPRADHCALLRTTHHRLPLQVVGYHRVRGTCRPLSCAKAPEKTGSHCVETIIRQRRLLHAGTLARQDHGRLQKRLMFGKLAWGEAPGRG 668
S+ A+GLARMM +I+EVF FGLTVSE+KTET+ +RV E+ T + ++ A +EFRYL L + + +R + + + E+FD+ G P+RLK RLL+A +EALLYGCM W+PR +H +L+TTHHRL L+V+GY R RGT R LS A+A ++ G VE +RQRRLL AG +ARQ GRL KRLMFG+L GE PG+G
Sbjct: 462 SKSADGLARMMTIIVEVFREFGLTVSERKTETLVMRVKERQRXXXXXXXVLTIEAAGQRYAQT---TEFRYLGGLVNEQGDLTREINHRSKAAWACIKRYATELFDRPGAPFRLKARLLQAEAVEALLYGCMTWSPRRNHYGMLQTTHHRLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEGPGQG 681
BLAST of mRNA_P-littoralis_Contig174.82.1 vs. uniprot
Match: A0A6H5KQ91_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ91_9PHAE) HSP 1 Score: 179 bits (454), Expect = 1.180e-43 Identity = 108/223 (48.43%), Postives = 144/223 (64.57%), Query Frame = 3
Query: 6 SEIAEGLARMMAMIMEVFATFGLTVSEKKTETMPIRVPEKPEVPREPIPPPTPKLPSKQRA*KA*GSEFRYLAALFSRM-ESSRAR*TPKPSREGLPQEDSREVFDQSG-PWRLKVRLLKAGVMEALLYGCMIWAPRADHCALLRTTHHRLPLQVVGYHRVRGTCRPLSCAKAPEKTGSHCVETIIRQRRLLHAGTLARQDHGRLQKRLMFGKLAWGEAPGRG 668
S+ A+GLARMM +I+EVF FGLTVSE+KTET+ +RV E+ T + ++ A +EFRYL L + + +R + + + E+FD+ G P+RLK RLL+A +EALLYGCM W+PR +H +L+TTHHRL L+V+GY R RGT R LS A+A ++ G VE +RQRRLL AG +ARQ GRL KRLMFG+L GE PG+G
Sbjct: 406 SKSADGLARMMTIIVEVFREFGLTVSERKTETLVMRVKERQRXXXXXXXVLTIEAAGQRYAQT---TEFRYLGGLVNEQGDLTREINHRSKAAWACIRRYATELFDRPGAPFRLKARLLQAEAVEALLYGCMTWSPRRNHYGMLQTTHHRLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGQG 625
BLAST of mRNA_P-littoralis_Contig174.82.1 vs. uniprot
Match: A0A6H5K7U5_9PHAE (Reverse transcriptase domain-containing protein n=9 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7U5_9PHAE) HSP 1 Score: 181 bits (458), Expect = 1.690e-43 Identity = 109/223 (48.88%), Postives = 144/223 (64.57%), Query Frame = 3
Query: 6 SEIAEGLARMMAMIMEVFATFGLTVSEKKTETMPIRVPEKPEVPREPIPPPTPKLPSKQRA*KA*GSEFRYLAALFSRM-ESSRAR*TPKPSREGLPQEDSREVFDQSG-PWRLKVRLLKAGVMEALLYGCMIWAPRADHCALLRTTHHRLPLQVVGYHRVRGTCRPLSCAKAPEKTGSHCVETIIRQRRLLHAGTLARQDHGRLQKRLMFGKLAWGEAPGRG 668
S+ A+GLARMM +I+EVF FGLTVSE+KTET+ +RV E+ T + ++ A +EFRYL L + + +R + + + E+FD+ G P+RLK RLL+A +EALLYGCM W+PR +H +L+TTHHRL L+V+GY R RGT R LS A+A ++ G VE +RQRRLL AG +ARQ GRL KRLMFG+L GE PGRG
Sbjct: 791 SKSADGLARMMTIIVEVFREFGLTVSERKTETLVMRVKERQRXXXXXXXVLTIEAAGQRYAQT---TEFRYLGGLVNEQGDLTREINHRSKAAWACIKRYATELFDRPGAPFRLKARLLQAEAVEALLYGCMTWSPRRNHYGMLQTTHHRLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGRG 1010
BLAST of mRNA_P-littoralis_Contig174.82.1 vs. uniprot
Match: A0A6H5JLH5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLH5_9PHAE) HSP 1 Score: 167 bits (423), Expect = 3.060e-43 Identity = 102/214 (47.66%), Postives = 136/214 (63.55%), Query Frame = 3
Query: 33 MMAMIMEVFATFGLTVSEKKTETMPIRVPEKPEVPREPIPPPTPKLPSKQRA*KA*GSEFRYLAALFSRM-ESSRAR*TPKPSREGLPQEDSREVFDQSG-PWRLKVRLLKAGVMEALLYGCMIWAPRADHCALLRTTHHRLPLQVVGYHRVRGTCRPLSCAKAPEKTGSHCVETIIRQRRLLHAGTLARQDHGRLQKRLMFGKLAWGEAPGRG 668
MM +I+EVF FGLTVSE+KTET+ +RV E+ T + ++ A +EFRYL L + + +R + + + E+FD+ G P+RLK RLL+A +EALLYGCM W+PR +H +L+TTHHRL L+V+GY R RGT R LS A+A ++ G VE +RQRRLL AG +ARQ GRL KRLMFG+L GE PG+G
Sbjct: 1 MMTIIVEVFREFGLTVSERKTETLVMRVKERQXXXXXXXLVLTIEAAGQRYAQT---TEFRYLGGLVNEQGDLTREINHRSKAAWACIKRYATELFDRPGAPFRLKARLLQAEAVEALLYGCMTWSPRRNHYGMLQTTHHRLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGQG 211
BLAST of mRNA_P-littoralis_Contig174.82.1 vs. uniprot
Match: A0A6H5K319_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K319_9PHAE) HSP 1 Score: 179 bits (454), Expect = 6.680e-43 Identity = 108/223 (48.43%), Postives = 144/223 (64.57%), Query Frame = 3
Query: 6 SEIAEGLARMMAMIMEVFATFGLTVSEKKTETMPIRVPEKPEVPREPIPPPTPKLPSKQRA*KA*GSEFRYLAALFSRM-ESSRAR*TPKPSREGLPQEDSREVFDQSG-PWRLKVRLLKAGVMEALLYGCMIWAPRADHCALLRTTHHRLPLQVVGYHRVRGTCRPLSCAKAPEKTGSHCVETIIRQRRLLHAGTLARQDHGRLQKRLMFGKLAWGEAPGRG 668
S+ A+GLARMM +I+EVF FGLTVSE+KTET+ +RV E+ T + ++ A +EFRYL L + + +R + + + E+FD+ G P+RLK RLL+A +EALLYGCM W+PR +H +L+TTHHRL L+V+GY R RGT R LS A+A ++ G VE +RQRRLL AG +ARQ GRL KRLMFG+L GE PG+G
Sbjct: 1078 SKSADGLARMMTIIVEVFREFGLTVSERKTETLVMRVKERQRXXXXXXXVLTIEAAGQRYAQT---TEFRYLGGLVNEQGDLTREINHRSKAAWACIKRYATELFDRPGAPFRLKARLLQAEAVEALLYGCMTWSPRRNHYGMLQTTHHRLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGQG 1297 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig174.82.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig174.82.1 >prot_P-littoralis_Contig174.82.1 ID=prot_P-littoralis_Contig174.82.1|Name=mRNA_P-littoralis_Contig174.82.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=107bp MEALLYGCMIWAPRADHCALLRTTHHRLPLQVVGYHRVRGTCRPLSCAKAback to top mRNA from alignment at P-littoralis_Contig174:307192..309478- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig174.82.1 ID=mRNA_P-littoralis_Contig174.82.1|Name=mRNA_P-littoralis_Contig174.82.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2287bp|location=Sequence derived from alignment at P-littoralis_Contig174:307192..309478- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig174:307192..309478- >mRNA_P-littoralis_Contig174.82.1 ID=mRNA_P-littoralis_Contig174.82.1|Name=mRNA_P-littoralis_Contig174.82.1|organism=Pylaiella littoralis U1_48|type=CDS|length=321bp|location=Sequence derived from alignment at P-littoralis_Contig174:307192..309478- (Pylaiella littoralis U1_48)back to top |